mRNA_Ecto-sp13_S_contig7542.18731.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7542.18731.1
Unique NamemRNA_Ecto-sp13_S_contig7542.18731.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7542.18731.1 vs. uniprot
Match: D7FLX8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLX8_ECTSI)

HSP 1 Score: 770 bits (1988), Expect = 1.210e-275
Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 2 
Query:    2 DFDEDENIEFTIEGDVEVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQMLDTTSSDTQALVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILRDIEQYYSTQIDEMPMNITDML 1180
            DFDEDENIEFTIEGDVEVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQMLDTTSSDTQALVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILRDIEQYYSTQIDEMPMNITDML
Sbjct:   10 DFDEDENIEFTIEGDVEVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQMLDTTSSDTQALVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILRDIEQYYSTQIDEMPMNITDML 402
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7542.18731.1 vs. uniprot
Match: A0A6V1T658_HETAK (Hypothetical protein n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A6V1T658_HETAK)

HSP 1 Score: 701 bits (1809), Expect = 1.970e-248
Identity = 342/393 (87.02%), Postives = 376/393 (95.67%), Query Frame = 2 
Query:    2 DFDEDENIEFTIEGDVEVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQMLDTTSSDTQALVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILRDIEQYYSTQIDEMPMNITDML 1180
            D+DEDE IEFT+   VEV+++FD+MGLK++LLRG+Y YGFERPSA+QQRA++PI  GRDVIAQSQSGTGKTAVFS+G LQ+LDTTS++TQ LVLSPTRELAEQ+QKV+L+LGD+MNVQCHACIGGKSI EDIRRLDYGVQVVSGTPGRVFDMIRRRNLRT  L+MLVIDEADEMLN+GFKEQ+YDIYRYLPPSTQVVL+SAT+PQEVLDMTKKFMN PVK+LVKRDELTLEGIKQFFVAVE+EEWKFDTLCDLYDTLT+TQAVIFCNTKRKVDWLT KMRE NFTVSSMHGDMPQ+ERDAIMEEFRSG SRVLIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVK+DD+RILRDIEQYYSTQIDEMPMN+ D++
Sbjct:   11 DYDEDEEIEFTVTDGVEVLQSFDTMGLKEDLLRGIYGYGFERPSAIQQRAIRPIVQGRDVIAQSQSGTGKTAVFSIGALQVLDTTSNETQVLVLSPTRELAEQSQKVVLSLGDYMNVQCHACIGGKSIAEDIRRLDYGVQVVSGTPGRVFDMIRRRNLRTTKLKMLVIDEADEMLNRGFKEQVYDIYRYLPPSTQVVLVSATLPQEVLDMTKKFMNEPVKVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTGKMREANFTVSSMHGDMPQRERDAIMEEFRSGASRVLIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 403
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7542.18731.1 vs. uniprot
Match: H3GA17_PHYRM (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=H3GA17_PHYRM)

HSP 1 Score: 688 bits (1775), Expect = 3.200e-243
Identity = 333/393 (84.73%), Postives = 373/393 (94.91%), Query Frame = 2 
Query:    2 DFDEDENIEFTIEGDVEVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQMLDTTSSDTQALVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILRDIEQYYSTQIDEMPMNITDML 1180
            D D+ +++EFT   D+ V   F++MGLK++LLRG+Y+YGFE+PSA+QQRA+KP   GRD+IAQSQSGTGKTAVFS+ +LQ LDT+S++TQALV+SPTRELAEQTQKV+LALGDFMNVQCHACIGGKS+GEDIRRLD+GVQVVSGTPGR+FDMIRRRNLRTRN++MLVIDEADEMLNKGFKEQIYDIYRYLPPSTQV+L+SATMPQEVLD+T+KFMN PVK+LVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT+TQAVIFCNTKRKVDWLT+KMRE NFTVS+MHGDMPQKERDAIM+EFRSG SRVLI TDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVK DD+RILRDIEQYYSTQIDEMPMN+ D++
Sbjct:   14 DEDDGDSVEFTTSKDITVFPTFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISVLQSLDTSSNETQALVISPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQYYSTQIDEMPMNVADLI 406
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7542.18731.1 vs. uniprot
Match: W7TCP3_9STRA (Eukaryotic initiation factor 4a-iii n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCP3_9STRA)

HSP 1 Score: 674 bits (1738), Expect = 1.480e-237
Identity = 334/392 (85.20%), Postives = 368/392 (93.88%), Query Frame = 2 
Query:    5 FDEDENIEFTIEGDVEVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQMLDTTSSDTQALVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILRDIEQYYSTQIDEMPMNITDML 1180
            FD  E +EFT+  DV V   F++MGL++ELLRG+Y YGFE+PSA+QQRAV PI  G DVIAQSQSGTGKTAVFSMGILQ LDT+S+DTQALVLSPTRELAEQTQKVIL+LGD+MNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNL+T++L+MLVIDEADEMLNKGFKEQIYDIYRYLPP+TQVVLISAT+PQEVLDMTKKFMN P+K+LVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT+TQAVIFCNT++KVDWL  KM E NFTVS+MHGDMPQKER+AIMEEFRSG +RVLIATDVWGRGLDVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFV++DD+ ILRDIEQYYSTQIDEMPM++ D++
Sbjct:   18 FDATEEVEFTVTKDVAVKPTFEAMGLREELLRGIYDYGFEKPSAIQQRAVLPIIKGHDVIAQSQSGTGKTAVFSMGILQRLDTSSNDTQALVLSPTRELAEQTQKVILSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQYYSTQIDEMPMSVHDLV 409
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7542.18731.1 vs. uniprot
Match: A0A1V9Z8I7_9STRA (Eukaryotic initiation factor 4A-III n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8I7_9STRA)

HSP 1 Score: 682 bits (1761), Expect = 3.640e-237
Identity = 335/390 (85.90%), Postives = 369/390 (94.62%), Query Frame = 2 
Query:   11 EDENIEFTIEGDVEVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQMLDTTSSDTQALVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILRDIEQYYSTQIDEMPMNITDML 1180
            E +NIEFT    ++VV  F++MGLK++LLRG+YAYGFE+PSA+QQRA+KP   GRD+IAQSQSGTGKTAVFS+ ILQ LD +S++TQALVLSPTRELAEQTQKV+LALGD+MNVQCHACIGGKSIGEDIRRLD+GVQVVSGTPGRVFDMIRRRNLRTRN++MLVIDEADEMLNKGFKEQIYDIYRYLPPSTQV+LISATMP EVL+MTKKFMN PVK+LVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT+TQAVIFCNTKRKVDWLT KMRE NFTV+SMHGDMPQKERDAIM+EFRSG SRVLI TDVWGRGLDVQQVSLVICYDLP+NRELYIHRIGRSGRFGRKGVAINFVK +D+RILRDIEQ+YSTQIDEMPMN+ D++
Sbjct:  268 EGKNIEFTTTSGLDVVSTFEAMGLKEDLLRGIYAYGFEKPSAIQQRAIKPAVQGRDLIAQSQSGTGKTAVFSISILQSLDCSSNETQALVLSPTRELAEQTQKVLLALGDYMNVQCHACIGGKSIGEDIRRLDFGVQVVSGTPGRVFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLISATMPAEVLEMTKKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTTKMREANFTVASMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPSNRELYIHRIGRSGRFGRKGVAINFVKDEDIRILRDIEQFYSTQIDEMPMNVADLI 657
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7542.18731.1 vs. uniprot
Match: A0A024UVY0_9STRA (Eukaryotic initiation factor 4A-III n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UVY0_9STRA)

HSP 1 Score: 670 bits (1729), Expect = 4.620e-236
Identity = 328/390 (84.10%), Postives = 365/390 (93.59%), Query Frame = 2 
Query:   11 EDENIEFTIEGDVEVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQMLDTTSSDTQALVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILRDIEQYYSTQIDEMPMNITDML 1180
            E + IEFT    ++VV  F++MGLK++LLRG+YAYGFE+PSA+QQRA++P   GRD+IAQSQSGTGKTAVFS+ ILQ LD  S++TQAL LSPTRELAEQTQKV+LALGD+MNVQCHACIGGKSIGEDIRRLD+GVQVVSGTPGRVFDMIRRRNLRTRN++MLVIDEADEML+KGFKEQIYDIYRYLPPSTQV+LISAT+P EVL+MTKKFMN PVK+LVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT+TQAVIFCNT+RKVDWLT KMRE NFTV+SMHGDMPQ ERDAIM+EFRSG SRVLI TD+WGRGLDVQQVSLVICYDLP+NRELYIHRIGRSGRFGRKGVAINFVK DD+RILRDIEQ+YSTQIDEMPMN+ D++
Sbjct:   28 EGKQIEFTTTDGLDVVPTFEAMGLKEDLLRGIYAYGFEKPSAIQQRAIRPAIQGRDLIAQSQSGTGKTAVFSISILQTLDCASNETQALALSPTRELAEQTQKVLLALGDYMNVQCHACIGGKSIGEDIRRLDFGVQVVSGTPGRVFDMIRRRNLRTRNIKMLVIDEADEMLSKGFKEQIYDIYRYLPPSTQVLLISATLPAEVLEMTKKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTNKMREANFTVASMHGDMPQNERDAIMQEFRSGGSRVLITTDIWGRGLDVQQVSLVICYDLPSNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQFYSTQIDEMPMNVADLI 417
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7542.18731.1 vs. uniprot
Match: A0A482SUI3_9ARCH (DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUI3_9ARCH)

HSP 1 Score: 669 bits (1727), Expect = 5.330e-236
Identity = 329/387 (85.01%), Postives = 366/387 (94.57%), Query Frame = 2 
Query:   20 NIEFTIEGDVEVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQMLDTTSSDTQALVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILRDIEQYYSTQIDEMPMNITDML 1180
            ++E T+  DVEV  +FD+M LK++LLRG+YAYGFERPSA+QQRA+ PI  GRDVIAQSQSGTGKTAVFS+GILQ +DT  ++ QALVLSPTRELAEQTQKV+L++GDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRV+DMI+R+NLRT+N++MLVIDEADEMLN+GFKEQIYDIYRYLPPSTQVVL+SAT+PQEVLDMTKKFMN PVKILVKRDELTLEGIKQFFVAVE+EEWKFDTLCDLY+TLT+TQAVIFCNTK+KVDWL  KMRE NFTVS+MHG+MPQ+ERDAIMEEFRSG SRVLIATDVWGRG+DVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFVK DDVRILRDIEQYYSTQIDEMPMN+ D++
Sbjct:   16 DMEITLTDDVEVHASFDTMRLKEDLLRGIYAYGFERPSAIQQRAIVPIVQGRDVIAQSQSGTGKTAVFSIGILQSIDTRINEVQALVLSPTRELAEQTQKVLLSIGDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVYDMIQRKNLRTKNVKMLVIDEADEMLNRGFKEQIYDIYRYLPPSTQVVLVSATLPQEVLDMTKKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYETLTITQAVIFCNTKKKVDWLAQKMRENNFTVSAMHGEMPQRERDAIMEEFRSGGSRVLIATDVWGRGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKEDDVRILRDIEQYYSTQIDEMPMNVADLI 402
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7542.18731.1 vs. uniprot
Match: F0Y6T8_AURAN (Apo-Eif4aiii n=3 Tax=Pelagomonadales TaxID=54409 RepID=F0Y6T8_AURAN)

HSP 1 Score: 668 bits (1724), Expect = 1.170e-235
Identity = 323/379 (85.22%), Postives = 361/379 (95.25%), Query Frame = 2 
Query:   44 DVEVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQMLDTTSSDTQALVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILRDIEQYYSTQIDEMPMNITDML 1180
            DV+V+++F+ M L+++LLRG+YAYGFERPSA+QQRA+ PI +GRDVIAQSQSGTGKTAVF + +LQ+L++ +++TQ L +SPTRELAEQTQKV LALGD+MNVQCHACIGGKSIGEDIRRLDYGVQ+VSGTPGRVFDMI+RRNLRTRNL+MLVIDEADEMLN+GFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMT+KFMN PV++LVKRDELTLEGIKQFFVAVE+EEWKFDTLCDLYDTLT+TQAVIFCNTKRKVDWL  KMRE NFTVS+MHGDMPQ+ERDAIM EFR G SRVLIATD+WGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVK+DDVRILRDIEQYYSTQIDEMPMN+ D++
Sbjct:   17 DVKVIDSFEGMALREDLLRGIYAYGFERPSAIQQRAITPIVAGRDVIAQSQSGTGKTAVFCIAMLQVLESATNETQMLTISPTRELAEQTQKVCLALGDYMNVQCHACIGGKSIGEDIRRLDYGVQIVSGTPGRVFDMIKRRNLRTRNLKMLVIDEADEMLNRGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTRKFMNEPVRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLANKMREANFTVSAMHGDMPQRERDAIMAEFRGGASRVLIATDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDVRILRDIEQYYSTQIDEMPMNVADLI 395
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7542.18731.1 vs. uniprot
Match: F0WE25_9STRA (DEAD box ATPdependent RNA helicase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WE25_9STRA)

HSP 1 Score: 666 bits (1718), Expect = 1.110e-234
Identity = 322/390 (82.56%), Postives = 367/390 (94.10%), Query Frame = 2 
Query:   11 EDENIEFTIEGDVEVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQMLDTTSSDTQALVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILRDIEQYYSTQIDEMPMNITDML 1180
            E++  ++T   +V++   F+SMGLK++LLRG+YAYGFE+PSA+QQRA+KP   GRDVIAQSQSGTGKTAVFS+ ILQ +++TS++TQALV+SPTRELAEQTQKV+LALGD+MNVQCHACIGGKS+GED+RRLDYGVQVVSGTPGR+FDMIRRR+LRTR +++LVIDEADEMLNKGFK+QIYDIYRYLPPSTQV+++SATMPQ+VLD+T KFMN PVK+LVKRDELTLEGIKQFFVAVE+EEWKFDTLCDLYDTLT+TQAVIFCNTKRKVDWLT KMRE NFTVSSMHGDMPQ+ERD IM+EFRSG SRVLI TD+WGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVK +DVRILRDIEQYYSTQIDEMPMNI D++
Sbjct:   10 EEDEKDYTTTENVKIYPTFESMGLKEDLLRGIYAYGFEKPSAIQQRAIKPAVQGRDVIAQSQSGTGKTAVFSISILQTINSTSNETQALVISPTRELAEQTQKVMLALGDYMNVQCHACIGGKSMGEDMRRLDYGVQVVSGTPGRIFDMIRRRHLRTRTIKLLVIDEADEMLNKGFKDQIYDIYRYLPPSTQVLVVSATMPQDVLDLTTKFMNEPVKVLVKRDELTLEGIKQFFVAVEQEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTTKMREANFTVSSMHGDMPQRERDTIMQEFRSGGSRVLITTDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDEDVRILRDIEQYYSTQIDEMPMNIADLV 399
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7542.18731.1 vs. uniprot
Match: A0A835YZ53_9STRA (Putative eukaryotic initiation factor 4A-III n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ53_9STRA)

HSP 1 Score: 665 bits (1715), Expect = 7.410e-234
Identity = 325/384 (84.64%), Postives = 365/384 (95.05%), Query Frame = 2 
Query:   17 ENIEFTIEGDVEVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQMLDTTSSDTQALVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILRDIEQYYSTQIDEMPMNI 1168
            E+IEFT+EG+++V+E+F++MGLK++LLRGV+AYGFE+PSAVQQRA+ PI SGRDV+AQSQSGTGKTAVF +G+LQ ++  S++TQALVLSPTRELAEQT+KV++ALGDFMNVQCHACIGGKSIGEDIRRLDYGV VVSGTPGRVFDM+RRRNLRTR L+MLVIDEADEML+KGFK+QIYDIYRYLPP  QVVLISATMPQEVLDMTKKFMN PVKILVKRDELTL+GIKQFFVAVE+EEWKFDTLCDLYD+L VTQAVIFCNTKRKV+WLT KMRE NFTV+SMHGDMPQKERDAIME+FR G +RVLI TDVWGRGLDVQQVSLVICYDLP NRELYIHRIGRSGRFGRKGVAINFV+ +DVR+LRDIEQ+YSTQIDEMPMN+
Sbjct:   37 EDIEFTLEGEIQVMESFETMGLKEDLLRGVFAYGFEKPSAVQQRAIMPIISGRDVVAQSQSGTGKTAVFCIGVLQSVNIASNETQALVLSPTRELAEQTEKVMMALGDFMNVQCHACIGGKSIGEDIRRLDYGVHVVSGTPGRVFDMLRRRNLRTRQLKMLVIDEADEMLSKGFKDQIYDIYRYLPPHCQVVLISATMPQEVLDMTKKFMNNPVKILVKRDELTLDGIKQFFVAVEREEWKFDTLCDLYDSLIVTQAVIFCNTKRKVEWLTGKMREANFTVASMHGDMPQKERDAIMEQFRGGGARVLITTDVWGRGLDVQQVSLVICYDLPLNRELYIHRIGRSGRFGRKGVAINFVRDEDVRVLRDIEQFYSTQIDEMPMNL 420
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7542.18731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLX8_ECTSI1.210e-275100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1T658_HETAK1.970e-24887.02Hypothetical protein n=2 Tax=Ochrophyta TaxID=2696... [more]
H3GA17_PHYRM3.200e-24384.73Uncharacterized protein n=27 Tax=Oomycota TaxID=47... [more]
W7TCP3_9STRA1.480e-23785.20Eukaryotic initiation factor 4a-iii n=2 Tax=Monodo... [more]
A0A1V9Z8I7_9STRA3.640e-23785.90Eukaryotic initiation factor 4A-III n=1 Tax=Achlya... [more]
A0A024UVY0_9STRA4.620e-23684.10Eukaryotic initiation factor 4A-III n=8 Tax=Saprol... [more]
A0A482SUI3_9ARCH5.330e-23685.01DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906... [more]
F0Y6T8_AURAN1.170e-23585.22Apo-Eif4aiii n=3 Tax=Pelagomonadales TaxID=54409 R... [more]
F0WE25_9STRA1.110e-23482.56DEAD box ATPdependent RNA helicase putative n=1 Ta... [more]
A0A835YZ53_9STRA7.410e-23484.64Putative eukaryotic initiation factor 4A-III n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7542contigEcto-sp13_S_contig7542:342..7430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score730.3
Seed ortholog evalue4.4e-208
Seed eggNOG ortholog2880.D7FLX8
Preferred nameEIF4A3
Model size2105
KEGG koko:K13025
KEGG Pathwayko03013,ko03015,ko03040,map03013,map03015,map03040
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000184,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0000462,GO:0000578,GO:0000956,GO:0001501,GO:0003002,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003727,GO:0003729,GO:0003743,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006413,GO:0006417,GO:0006448,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007316,GO:0007350,GO:0007351,GO:0007389,GO:0007610,GO:0007611,GO:0007612,GO:0008026,GO:0008104,GO:0008135,GO:0008143,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008298,GO:0008306,GO:0008358,GO:0008380,GO:0008595,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009719,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009887,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009948,GO:0009952,GO:0009966,GO:0009968,GO:0009987,GO:0009994,GO:0010033,GO:0010035,GO:0010467,GO:0010468,GO:0010494,GO:0010501,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016281,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017148,GO:0019094,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0023051,GO:0023057,GO:0030154,GO:0030425,GO:0030490,GO:0030554,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031503,GO:0031644,GO:0031645,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033120,GO:0034248,GO:0034249,GO:0034250,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035145,GO:0035282,GO:0035368,GO:0035613,GO:0035639,GO:0035640,GO:0035770,GO:0036094,GO:0036464,GO:0036477,GO:0042221,GO:0042254,GO:0042274,GO:0042391,GO:0042623,GO:0042802,GO:0042886,GO:0042995,GO:0043005,GO:0043009,GO:0043021,GO:0043025,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043603,GO:0043604,GO:0043933,GO:0044057,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044877,GO:0045184,GO:0045451,GO:0045495,GO:0045727,GO:0045893,GO:0045900,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0046907,GO:0048024,GO:0048026,GO:0048468,GO:0048469,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048585,GO:0048598,GO:0048599,GO:0048609,GO:0048701,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0050804,GO:0050805,GO:0050877,GO:0050890,GO:0050896,GO:0051028,GO:0051098,GO:0051100,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060255,GO:0060810,GO:0060811,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070717,GO:0070727,GO:0070848,GO:0070887,GO:0071013,GO:0071166,GO:0071241,GO:0071310,GO:0071363,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072714,GO:0072715,GO:0080090,GO:0090304,GO:0090394,GO:0097078,GO:0097159,GO:0097367,GO:0097447,GO:0097458,GO:0098815,GO:0099177,GO:0120025,GO:0120038,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902415,GO:1902494,GO:1902680,GO:1903040,GO:1903311,GO:1903313,GO:1903506,GO:1903508,GO:1904569,GO:1904570,GO:1904572,GO:1904573,GO:1904574,GO:1904888,GO:1905214,GO:1905215,GO:1990089,GO:1990090,GO:1990416,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons10
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0328@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-22_000120.1
EC3.6.4.13
Cds size1110
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03012,ko03019,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7542.18731.1prot_Ecto-sp13_S_contig7542.18731.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7542 584..6508 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464022.653879-UTR-Ecto-sp13_S_contig7542:341..3931681464022.653879-UTR-Ecto-sp13_S_contig7542:341..393Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7542 342..393 +
1681464022.6772387-UTR-Ecto-sp13_S_contig7542:562..5831681464022.6772387-UTR-Ecto-sp13_S_contig7542:562..583Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7542 563..583 +
1681464022.814863-UTR-Ecto-sp13_S_contig7542:6508..74301681464022.814863-UTR-Ecto-sp13_S_contig7542:6508..7430Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7542 6509..7430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464022.6877792-CDS-Ecto-sp13_S_contig7542:583..7061681464022.6877792-CDS-Ecto-sp13_S_contig7542:583..706Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7542 584..706 +
1681464022.6966515-CDS-Ecto-sp13_S_contig7542:1410..15331681464022.6966515-CDS-Ecto-sp13_S_contig7542:1410..1533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7542 1411..1533 +
1681464022.7143803-CDS-Ecto-sp13_S_contig7542:1902..20041681464022.7143803-CDS-Ecto-sp13_S_contig7542:1902..2004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7542 1903..2004 +
1681464022.7239594-CDS-Ecto-sp13_S_contig7542:2605..26771681464022.7239594-CDS-Ecto-sp13_S_contig7542:2605..2677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7542 2606..2677 +
1681464022.7345254-CDS-Ecto-sp13_S_contig7542:3073..32861681464022.7345254-CDS-Ecto-sp13_S_contig7542:3073..3286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7542 3074..3286 +
1681464022.7448683-CDS-Ecto-sp13_S_contig7542:4073..41811681464022.7448683-CDS-Ecto-sp13_S_contig7542:4073..4181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7542 4074..4181 +
1681464022.7584565-CDS-Ecto-sp13_S_contig7542:4946..50591681464022.7584565-CDS-Ecto-sp13_S_contig7542:4946..5059Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7542 4947..5059 +
1681464022.7824512-CDS-Ecto-sp13_S_contig7542:5883..59941681464022.7824512-CDS-Ecto-sp13_S_contig7542:5883..5994Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7542 5884..5994 +
1681464022.800694-CDS-Ecto-sp13_S_contig7542:6363..65081681464022.800694-CDS-Ecto-sp13_S_contig7542:6363..6508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7542 6364..6508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7542.18731.1

>prot_Ecto-sp13_S_contig7542.18731.1 ID=prot_Ecto-sp13_S_contig7542.18731.1|Name=mRNA_Ecto-sp13_S_contig7542.18731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=370bp
MGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVF
SMGILQMLDTTSSDTQALVLSPTRELAEQTQKVILALGDFMNVQCHACIG
GKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEM
LNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTKKFMNMPVKILVK
RDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKRKVDW
LTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRGLD
VQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILRDI
EQYYSTQIDEMPMNITDML*
back to top

mRNA from alignment at Ecto-sp13_S_contig7542:342..7430+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7542.18731.1 ID=mRNA_Ecto-sp13_S_contig7542.18731.1|Name=mRNA_Ecto-sp13_S_contig7542.18731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7089bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7542:342..7430+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGATTTCGATGAGGACGAAAACATCGAGTTCACCATCGAGGGCGATGTCG
AGGTGAGATAAACCGCAGATTCCGTAGTAGGCGTGCCCGATGTCGGGCGG
ATGAATCGAACGTAAGGGCGTTCCGGCCCTAGTGAGGGTCGGTCGACTGT
AGATGGAAGCGAGTGACATGGTAAAAACGCGGTGTGAGGTATTCACTTTG
ACAAACGTCCAATGCGTACAGGTAGTGGAGAATTTCGACTCGATGGGGCT
GAAGGACGAGCTTCTGCGCGGAGTTTACGCCTATGGGTTCGAGCGTCCCT
CGGCGGTGCAGCAGAGGGCTGTCAAGCCCATCACCAGCGGGAGGGACGTC
ATCGCCCAGAGTCAGGTGGATCATTTGTCACATACGTTTGGTTGGTTGAG
CCGTTTTCCAATCTGTTTTCGCTTGTGTTGTTTTTCGTCCTGTTGAATGT
TTGCCAGCAACAGAGACCCCAGCGCCAGGGGGGGGTTATACGCTTTTGCT
GCTTCGGCGATCCGTATTTCTTAGACGTATCTCGAAATATCCCCTGGCGA
AGCCTTTGCAAGCAAGCTGGCCGCGTTTCATAATTCGTTCGACGACAGGA
AGAGTGCCGTGTGCGATGCCCCCTGTACCGGCGACGCTTTGCAGTCATGC
GACGGAGTTACCGCCTTCGACGTGTACCGGCTGATCCGTCCGCGGCTGAT
CCGTCTATTGCGGATCAGCCGGTAAACGTCGAACGCGACAACTCCGCCGC
ATGACTGCGAGGCGTCACCGGTGCTGGGCATCGCACACGTCACCCTTCCT
GTCGTCGAACCAAACCTGACACGGCGCACCCGTTGCTTTCATCTATTAAA
TACAATTGTAGTCACTCCCCATGTCACCTCTTCCCATACAAGAAACACGC
TCACCATTTTTGCGCGCTGTGTGTCTCGTTCTTTACCTCTACCACGTCCC
TCCTTCCATCTTCCACGACACACATCATCCACTGCCGGGTGTCATCGCCC
GCTTCAATTCGCCGATCGACCGTGCGATGGCAATCATGCCAATCATGACA
ATCGTGTGATGACAATTAGTCGGGGACTGGTAAGACGGCGGTGTTCTCCA
TGGGCATCCTACAGATGCTCGACACGACTTCGTCCGACACGCAGGCGCTC
GTGCTTTCGCCAACGCGCGAACTGGCCGAGCAAACTCAAAAGGTACGATG
CGATCAGCTTGGGCTAGGTTTATGGTTTTGACAAGTGGTCAATGAGGGGC
AGGGATGGGAACAGTCTGTTGGTGTTGGTGTGAAATTTTTGCACGTTCAT
GAGATGAACATGGTGGGCAGACTGTGTTCGCTGCGAGTCCACGTCGTCCT
GTAGATTATTTGTCGACAGATGCTTTGCGCATTGTCCGCGTAGCATGGTG
TGCCATTTTCTTTTCCTCCGGACTTGTGTCTATTTCGCATGCGACTGCTG
CACACGGTCTTATCTGCGACAACCGTGGCTTTCTGGCGTGTTGGTTGCGC
ACTCTGGAATTGTTGGTGATTGCGTGCGTTGTTCATGCTTTTTGTTGTGA
TTTTGGAGCAGGTTATTCTGGCGCTGGGGGACTTCATGAACGTGCAGTGC
CATGCTTGCATCGGCGGCAAGAGCATCGGAGAGGACATCCGCCGCCTCGA
CTACGGAGTCCAGGTAAGGCATTTCTAGTACTTGACCGCGCAAAACTGAA
GTAGTAAATGGCTCTTTCGTCCTGTGATGGACAAGAAACCGCAGGACCGT
CGTGGTACTGTGGTACACTCGACTCCTGTTCCATTCACGAGGCATATCCG
TCAGTCTCGCGATCGATTTGCACGTCGAGATAGCTGCAAGACCAGTGTTT
CCTCGACTTCTCCTGGCTTGGTGTGTCAATCGTGTCCAGAGATGTCTTGC
CACATGCGTGGCGGGTCAGTCGCCAGGTACACGAAGTTGTTGTTGGCTCT
TACATGAAGACCTATTGCTTGCGCGTACGCTATCCTGCCCTACCCCCATC
CTTGGGGTTATTCTTTCGATGGTCAGTTTTCGGCTACACTTTTTTTGGAT
AGAACATGAGACCTAACACCTCTTGCGTTTTCCTGCCCTGCCTCGGTCCG
TGGGGATTTTTTTGTCTCGGTGGTCAACGTTCGGCTACAGTTGTTTTTGA
CAGAACTTGAGACCAAACTACTCTTGCGTTTTCCCGCCCTGCGCCGATCC
TTGGGGATTTGTTGTCTCGGTGGTTGATTTTCGGCTGCTGTTTTTTTTGT
CCGGAACGTAACAGGTGGTGTCCGGAACTCCCGGACGCGTGTTCGACATG
ATCAGGCGCCGCAACTTGCGCACTCGCAACCTCCAGGTGATGGAGCGACG
GAGCGTGCCGGAAGTGTTTGGATGTTGGCTGTTTGTGTAGTCTTGTGTTT
CAACCTGGCCACAGATGCGTAAATCGTGTTCTCGTCACTGTATTCTGAGC
TTGTCGGATTTTTTGGGTTGGTTGTTTTAGTATTGTGTTCCAATGTGGCC
ACCAGATATGTGCTTCATCATGTACGCATACCACATGCACCACGTGTTGT
CATTACTGTATCCCGCACTTTGCAAGGCTCTGTCTGACCCTTGGCCCTCT
ACATCTAACCGCATACTACGCGCCAAAACATGAACACGTGTGCAGATAAA
TAGATGTATCTATTGTCCAGGACTTTACATCCAGGAGAAAAAATTGTCTC
GTTTGCGCGTGGACTTGTGTGTGTGTGTGCAGATGCTGGTGATCGACGAG
GCGGACGAGATGCTCAACAAGGGCTTCAAGGAGCAGATCTACGACATCTA
CAGGTACTTGCCCCCGTCCACCCAGGTGGTGCTGATCAGCGCCACGATGC
CGCAAGAGGTGCTGGACATGACCAAGAAGTTCATGAACATGCCCGTCAAG
ATCCTCGTCAAGCGCGATGAGCTCACCCTCGAGGGCATCAAGCAGGTAAG
CAGATGACCGCCACCGTCGACATCAAGGGTGGTGAAAGCGTCAACGGGAG
CAGCAGCATAAACAACAGCAGTAACGTCACCTGACCGAATGAGCACAATG
GGGGTCCCTCAATAGTGCCGATTGACTTATGCCACTGTCCGGTATAGTGC
CGGTAAAACCGCTTCGACACACGGATGGAATGTTCCGATATTGAATTGTT
CTCATTCTCTGAATAGTGATCCGATAGTGCTGGGTGCCCGTAAGTGTCGG
TGAATGTGGAGGGTACATTCCGGAACAGCAAGCTGAGGGACCCCATCTTT
AGGAGTACGAAATGAGGGTGTCGACGATAGCCACAGTGACAGCGAGACAC
GAGAGTAAGGTGTTTGTCAAACGCGAAGAGCTAAATGTCGAGACCGTAAC
CAGGGTCATGGCTCCTAACAGCAATGCTGGCCTCAAAATCATGTTGCTGT
CAGGAGCCATGACCCTGGTTACGGCCTCAAAATTTAGCCCTTCGCGTTTG
ACAAGCACCTTGCTCAGGCTGTCGCTTTGGCCGTCGTCGTCGCTGCTTGT
TGCTTCGACTCAAACGACGTTATTGTTGTTTATGCCTTGGCCAGAGCTAG
CCCGATGCTGTACGGCTAGGAAGATTGGGCGAAGGCAGACTTGGGAGGGC
CAGTTGCACAGTCGTCCCCGCTCAAGCCCTTCCCCTGTTATCCCTCCGCT
GCTTGTTTCTTTTCCCGCAAACTCTTACCGGACTCCTTACCCCTGTCACC
CTTCATCACTGGTTGATGGTACAAATAACAAGTTTTTCGTGGCGGTGGAG
AAGGAGGAGTGGAAGTTCGACACACTGTGCGACCTGTATGACACACTCAC
CGTTACTCAGGCGGTGATCTTCTGCAACACCAAGCGGAAGGTGCGGTCAA
ATGTATGCTTGGATGATGCAGCAGCAGTAGCTAGTCCGTGAGAGAGTGGG
AGGGCCTGTGTTGACGGTGGTTGGTTGTATCGGTGTCGCCGTGGCATCAT
GCAAGCGGTCGCCTTGGGTAAGGCAGGCAATACCACACGCTGAGGACAAG
GGCTAAGTCGTTTGTACAGAAGAAGCAGCAACAGCAGCAGCAGTACCAGC
GGCAGCAGCAGCAGCAGCACTGCGCGAATCGACTAGACGGGGAGGAAGCC
TGCCTCCACCGTCGGGTGTTGTTTGTTCGTGCAAACCGCAGCCAGGCGGT
ATGATGATGCGGATAGGTACTGCCCCGGTTGTGTGGCGGGTCGTGTCGGG
CCTGTTGCATGCGGTACGCCGCAAGGCGGCAGTGTTCGGCGCGATATACC
CTGTTCTTGTCGAGATGAGCCATGCCATGCCATCCTCGACCATCCTTCTC
ATTGGAGAGTGTGACATCATCACTGCCATTCCCTTGGCTCCGCCGTTCCG
TTCTGCGAGGTACTTCTGATAGTAACGGTGTATGGCGGTGGCAATAGTGC
TGCTGCGGTCTGTGAGGATGCCCCCATTTGTGAAACTGATAAAACGCTGC
GGCACGTTGCCCTGCATGCGATGTGTGGCACATCTTTTGATCAAGTGGCA
GTCTGCCGAATGATTTTATTTGTCCGATTATGTTTGCAGTATAATGGTGG
ATGTTGCTCATGTTTGCTTCTTACTGCTGCTGTTGACACGTTTGCTGGAC
CGCAGGTGGACTGGCTGACGGCAAAGATGCGCGAAGTGAACTTCACTGTA
TCCTCCATGCACGGGGACATGCCCCAGAAGGAGAGGGACGCTATCATGGA
GGAGTTCCGCTCGGGGAGGTGAGGGTTCCTGCATAACTCGGCAACACCTA
GACCTACGTTAATGGTTCCTGCGTAAGTTGGCAACACCTGGGCCTACGTT
TGTTAGATTGTGGGCCGAGTGTGGGGATGGGGTTGGTTTCAAGACGGCGT
GCGATACTCAAGAATGCTTCTTTGTTGGCCACCAGTATTTTTTGTTTTTT
TCTGCACCAAGGGTAGCGTAGCAAACAAAAACGTGGATAAGTTCAGCTCG
GGAAGGGGAGGCGTCCTCCATAGCAATAGCAACCCCTATTAGTAGACCTA
CGTTACCGTAGGTGATATGATGCAAGATATCATATCTTGGCGTTATCGGT
ATCGGACACGCTTCCACTTCCCAAACTCTCTAGTGATATCACTGCTGGCC
CACGAGCGAAACATTGATGCGCAAGATCTCGCCTAAAGTGCACGGGATAA
GTTCTGCACGCCACAGTGTTTCGGGGACGATCTCTAGGTATTTTGAGTCA
GGATCTCATCGCGGCCTGATTTTTTTTTTTTTCGCCTCTGGCAGCGCCTG
CTCACCCTTGTCTATTCGCGTGGCTTTGGTGGGCGCTTCCTTTTTTTGTA
CCAATTACCGCCTCTAATGTTTTGCCCTTTTTTTTTTTCTTTGACCTGTA
GGAGATGCGTACCACTTGTTTGGGAAGGTGGCCTGTAACCACGGAAGGCG
TCCGCGTCAGTTGGACCGGGCGGGTGTTAGGAGGAACCTAGCAGAATAGC
ACCGGACCGGTTATTTGTGTCAAGACAACAACAAAAACAACAACAATAAC
AACAATGACCACAAACAACAAAAACTTCCAACGAACATCCAGGTCGCGAG
TGCTGATCGCAACGGACGTGTGGGGGCGAGGTCTAGACGTGCAGCAGGTG
TCGCTCGTCATCTGCTACGACCTTCCCAACAACCGAGAGCTCTACATCCA
CCGGTAAGCGCTCACGGTAGACTACATCCCCGGCAGGGTTACCCGCGGCG
ATGGATGGCTTGTGTCTTGTTGGATGGTTGGCTAAATGGCCGTTCGGGGG
TCGGTTGTTGTTCGCACTGACGAGTCAACTATTGCCTACGGACATGTCCT
CACGCGTCTATTTAGCAAGATTGGGCCGCCTTTTCGCGGATATTATTGTG
AACCTGTGAAGCAGAGAGGGGGTAGCTTCACCCTAACCCTTAGCCCAAGC
CTAATCCCACCATCACACCGTCACCCTTACAAACTAACACCAAGTGTAGA
GTCCGTGCGAAGGGTACTGGTAACAATCGCGTGCCCTCCTTTATCGTTAT
GTTTCTTTTTCGTCGTCGTCAGCATCGGCCGGTCAGGGAGATTTGGGCGA
AAGGGTGTGGCGATCAACTTCGTCAAGTCCGACGATGTGCGTATCCTCAG
AGACATCGAGCAGTACTACTCGACGCAGATCGACGAGATGCCCATGAACA
TCACCGACATGCTCTAGGGGTGGTGCTGGAGAAGCAGTCGCGGCTGCTGT
AGCTGCTGTTTCGAACGTCAGCAAGACTGGTGTGTTGGTACACGCTCTAC
AATGAGATCCGCCATGGACGTTAATCATTATGATCATTGTTTTCGTGGGT
GTAAGAGAGTATGACCCAAGGTGTTCGCTTGAACGGGTATTGATTCTTCT
CTTCACCATCCCCGTTTGATCTGTGGGACGTATGTTGGAACATGAAGTAC
CCCCGCTTGGGCAGCATTTTTTTGTGCTTTCTTGCCAAGTCGGCGGTATT
TGTGCTCTTCGATGCAAGCTTACCCGACCCCCGACCGAACGATGTCGTGT
GTCTCTGAGTTGTGTTATCACCGCTTGTCTTGTAAGGACGTGCGCGGTAT
GCTGCAAGTCCGGCATTTTGGAATACTTTGCTGTGGAGGTTCTACGATCA
CGCACGTCTGTGAGCGTGCTGTTGCTGCCGGGCAAGTAATGTACAAATCG
CATGCCCGCGGTTTCACAAAGAGCTGGGTCTAGAGGCGTTTTTTTTTGGG
AGGGGGAGGGAGCATTCTACAGCAGCTGGATCTTCCGCATTGTAGGAATG
GCACAAGCATTTCAGTGGGGTGGAAGGGCAGACAAGTGCCGGGCGTTGGT
CCAACATGCACAATCGTGCGGTTTTTTCAATCGTTGTGTGATTTTTGAAT
GGATTTTCGGAGTGATCGGAATACTGCGTTGCCTCAAAAAAGAGCTGCAG
TTGACACAAAATGAGAATTTGCAGGGGACTGATTGCTGTGGTCACGTTGC
TGCTCTCTTCGAAAGACAGTTGGGTAGGGTATTTCATCTCGATCAATCAC
TGGCAGTACTTCATCTACGTTTCCTTTCTTGCCCACGGCAACGCCAAGCA
TGATGCCATGTTTGCTGTAGTGAGTGTTGGTAGTTTCTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7542:342..7430+

>mRNA_Ecto-sp13_S_contig7542.18731.1 ID=mRNA_Ecto-sp13_S_contig7542.18731.1|Name=mRNA_Ecto-sp13_S_contig7542.18731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1110bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7542:342..7430+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCTGAAGGACGAGCTTCTGCGCGGAGTTTACGCCTATGGGTTCGA
GCGTCCCTCGGCGGTGCAGCAGAGGGCTGTCAAGCCCATCACCAGCGGGA
GGGACGTCATCGCCCAGAGTCAGTCGGGGACTGGTAAGACGGCGGTGTTC
TCCATGGGCATCCTACAGATGCTCGACACGACTTCGTCCGACACGCAGGC
GCTCGTGCTTTCGCCAACGCGCGAACTGGCCGAGCAAACTCAAAAGGTTA
TTCTGGCGCTGGGGGACTTCATGAACGTGCAGTGCCATGCTTGCATCGGC
GGCAAGAGCATCGGAGAGGACATCCGCCGCCTCGACTACGGAGTCCAGGT
GGTGTCCGGAACTCCCGGACGCGTGTTCGACATGATCAGGCGCCGCAACT
TGCGCACTCGCAACCTCCAGATGCTGGTGATCGACGAGGCGGACGAGATG
CTCAACAAGGGCTTCAAGGAGCAGATCTACGACATCTACAGGTACTTGCC
CCCGTCCACCCAGGTGGTGCTGATCAGCGCCACGATGCCGCAAGAGGTGC
TGGACATGACCAAGAAGTTCATGAACATGCCCGTCAAGATCCTCGTCAAG
CGCGATGAGCTCACCCTCGAGGGCATCAAGCAGTTTTTCGTGGCGGTGGA
GAAGGAGGAGTGGAAGTTCGACACACTGTGCGACCTGTATGACACACTCA
CCGTTACTCAGGCGGTGATCTTCTGCAACACCAAGCGGAAGGTGGACTGG
CTGACGGCAAAGATGCGCGAAGTGAACTTCACTGTATCCTCCATGCACGG
GGACATGCCCCAGAAGGAGAGGGACGCTATCATGGAGGAGTTCCGCTCGG
GGAGGTCGCGAGTGCTGATCGCAACGGACGTGTGGGGGCGAGGTCTAGAC
GTGCAGCAGGTGTCGCTCGTCATCTGCTACGACCTTCCCAACAACCGAGA
GCTCTACATCCACCGCATCGGCCGGTCAGGGAGATTTGGGCGAAAGGGTG
TGGCGATCAACTTCGTCAAGTCCGACGATGTGCGTATCCTCAGAGACATC
GAGCAGTACTACTCGACGCAGATCGACGAGATGCCCATGAACATCACCGA
CATGCTCTAG
back to top