mRNA_Ecto-sp13_S_contig75417.18730.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75417.18730.1
Unique NamemRNA_Ecto-sp13_S_contig75417.18730.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig75417.18730.1 vs. uniprot
Match: A0A6H5JY87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY87_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.020e-35
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1
Query:    1 FRQIKAVGFDMDYTLAQYFTAFDQLAFDGAKEKLVKDLGYPQDVDGFMYDPEHFSRGLVIDLERGEM 201
            FRQIKAVGFDMDYTLAQYFTAFDQLAFDGAKEKLVKDLGYPQDVDGF+YDPEHFSRGLV+DLERG +
Sbjct:  193 FRQIKAVGFDMDYTLAQYFTAFDQLAFDGAKEKLVKDLGYPQDVDGFIYDPEHFSRGLVVDLERGNI 259          
BLAST of mRNA_Ecto-sp13_S_contig75417.18730.1 vs. uniprot
Match: D7FMF3_ECTSI (5'-nucleotidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF3_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.420e-34
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1
Query:    7 QIKAVGFDMDYTLAQYFTAFDQLAFDGAKEKLVKDLGYPQDVDGFMYDPEHFSRGLVIDLERG 195
            QIKAVGFDMDYTLAQYFTAFDQLAFDGAKEKLVKDLGYPQDVDGF+YDPEHFSRGLVIDLERG
Sbjct:  146 QIKAVGFDMDYTLAQYFTAFDQLAFDGAKEKLVKDLGYPQDVDGFVYDPEHFSRGLVIDLERG 208          
BLAST of mRNA_Ecto-sp13_S_contig75417.18730.1 vs. uniprot
Match: A0A835Z4H4_9STRA (5'-nucleotidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H4_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.160e-23
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    4 RQIKAVGFDMDYTLAQYFTAFDQLAFDGAKEKLVKDLGYPQDVDGFMYDPEHFSRGLVIDLERGEM 201
            +QIKAVGFDMDYTLAQYF AFD LAF+GAKEKLV  LGYP  V  F YDP +F+RGLVID +RG +
Sbjct:   34 KQIKAVGFDMDYTLAQYFPAFDLLAFEGAKEKLVHKLGYPSQVLEFDYDPNYFTRGLVIDKQRGNI 99          
BLAST of mRNA_Ecto-sp13_S_contig75417.18730.1 vs. uniprot
Match: A0A0G4H1H6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H1H6_9ALVE)

HSP 1 Score: 93.2 bits (230), Expect = 1.370e-20
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 1
Query:    7 QIKAVGFDMDYTLAQYFTAFDQLAFDGAKEKLVKDLGYPQDVDGFMYDPEHFSRGLVIDLERG 195
            QIKAVGFDMD+TLAQY TAFD+LA++GAK+KLV+ +GYP++V GF YDP  F RGL++D + G
Sbjct:  169 QIKAVGFDMDFTLAQYTTAFDELAYEGAKKKLVEIMGYPEEVLGFRYDPTLFRRGLLVDKQLG 231          
BLAST of mRNA_Ecto-sp13_S_contig75417.18730.1 vs. uniprot
Match: A0A8J9T4I3_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T4I3_PHATR)

HSP 1 Score: 86.7 bits (213), Expect = 2.180e-20
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 1
Query:   10 IKAVGFDMDYTLAQYFT-AFDQLAFDGAKEKLVKDLGYPQDVDGFMYDPEHFSRGLVIDLERG 195
            +KAVGFDMDYTLAQY   AFDQLAFDGAK KLV ++GYP++V  F YD  +++RGL+ID +RG
Sbjct:   14 VKAVGFDMDYTLAQYKEPAFDQLAFDGAKAKLVYNMGYPKEVLEFEYDHRYWARGLIIDTQRG 76          
BLAST of mRNA_Ecto-sp13_S_contig75417.18730.1 vs. uniprot
Match: A0A7S1U7H3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7H3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.150e-19
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    4 RQIKAVGFDMDYTLAQYFTAFDQLAFDGAKEKLVKDLGYPQDVDGFMYDPEHFSRGLVIDLERG 195
            RQI A+GFDMD+TLAQY TAFD LAF+GAKEKLV ++GYP+ V  F YD + F+RGL+ID   G
Sbjct:   90 RQIDAIGFDMDFTLAQYETAFDLLAFEGAKEKLVTEMGYPEAVRDFKYDADTFTRGLIIDKAAG 153          
BLAST of mRNA_Ecto-sp13_S_contig75417.18730.1 vs. uniprot
Match: A0A1Z5JYK9_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYK9_FISSO)

HSP 1 Score: 89.0 bits (219), Expect = 4.170e-19
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 1
Query:   10 IKAVGFDMDYTLAQYF-TAFDQLAFDGAKEKLVKDLGYPQDVDGFMYDPEHFSRGLVIDLERG 195
            I+A+GFDMDYTLAQY  T F +LAFDGAK KLV+ LGYP++V  F YDP H+ RGL+ID +RG
Sbjct:   95 IQAIGFDMDYTLAQYNETTFAELAFDGAKRKLVESLGYPEEVLDFTYDPAHWVRGLIIDTQRG 157          
BLAST of mRNA_Ecto-sp13_S_contig75417.18730.1 vs. uniprot
Match: A0A7S2WFZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WFZ8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 9.270e-19
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1
Query:   10 IKAVGFDMDYTLAQYFTA-FDQLAFDGAKEKLVKDLGYPQDVDGFMYDPEHFSRGLVIDLERG 195
            ++A+GFDMDYTLAQY    FD+LAFDGAK+KLV +LGYP+ V  F YD E + RGL+ID +RG
Sbjct:   24 VRAIGFDMDYTLAQYKQPEFDKLAFDGAKQKLVDELGYPKKVLDFEYDHEFWVRGLIIDTQRG 86          
BLAST of mRNA_Ecto-sp13_S_contig75417.18730.1 vs. uniprot
Match: A0A7R9YB24_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YB24_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.650e-18
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    4 RQIKAVGFDMDYTLAQYFTAFDQLAFDGAKEKLVKDLGYPQDVDGFMYDPEHFSRGLVIDLERG 195
            RQ+  VGFDMD+TLAQY TAFD LAF+GAK+KL  + GYP++V  F YD   +SRGL+ID  RG
Sbjct:   73 RQLDVVGFDMDHTLAQYETAFDLLAFEGAKDKLHTEYGYPEEVLDFHYDASTYSRGLIIDKARG 136          
BLAST of mRNA_Ecto-sp13_S_contig75417.18730.1 vs. uniprot
Match: W7T4C7_9STRA (Imp-gmp specific 5 nucleotidase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4C7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.990e-18
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    4 RQIKAVGFDMDYTLAQYFTAFDQLAFDGAKEKLVKDLGYPQDVDGFMYDPEHFSRGLVIDLERGEM 201
            +QI+A+GFDMDYTLAQY  AF+ LA+DGAK+KLV    YP+ V  F YD  +F RGLVID ERG +
Sbjct:   92 QQIRAIGFDMDYTLAQYNLAFELLAYDGAKQKLVDTFRYPEAVASFEYDSTYFRRGLVIDKERGNV 157          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75417.18730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JY87_9PHAE1.020e-3594.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMF3_ECTSI1.420e-3498.415'-nucleotidase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A835Z4H4_9STRA3.160e-2372.735'-nucleotidase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A0G4H1H6_9ALVE1.370e-2066.67Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A8J9T4I3_PHATR2.180e-2066.67Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7S1U7H3_9STRA1.150e-1965.63Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A1Z5JYK9_FISSO4.170e-1966.67Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2WFZ8_9STRA9.270e-1963.49Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7R9YB24_9STRA1.650e-1862.50Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
W7T4C7_9STRA1.990e-1862.12Imp-gmp specific 5 nucleotidase n=3 Tax=Monodopsid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75417contigEcto-sp13_S_contig75417:26..226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score116.7
Seed ortholog evalue3.6e-24
Seed eggNOG ortholog2880.D7FMF3
Model size201
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.5'-nucleotidase activity
EggNOG OGsKOG2469@1,KOG2469@2759
Cds size171
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464022.6121123-CDS-Ecto-sp13_S_contig75417:25..1961681464022.6121123-CDS-Ecto-sp13_S_contig75417:25..196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75417 26..196 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464022.6250422-UTR-Ecto-sp13_S_contig75417:196..2261681464022.6250422-UTR-Ecto-sp13_S_contig75417:196..226Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig75417 197..226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75417.18730.1prot_Ecto-sp13_S_contig75417.18730.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75417 26..196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75417.18730.1

>prot_Ecto-sp13_S_contig75417.18730.1 ID=prot_Ecto-sp13_S_contig75417.18730.1|Name=mRNA_Ecto-sp13_S_contig75417.18730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
MDYTLAQYFTAFDQLAFDGAKEKLVKDLGYPQDVDGFMYDPEHFSRGLVI
DLERGEM
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mRNA from alignment at Ecto-sp13_S_contig75417:26..226-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75417.18730.1 ID=mRNA_Ecto-sp13_S_contig75417.18730.1|Name=mRNA_Ecto-sp13_S_contig75417.18730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75417:26..226- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCGCCAGATCAAGGCCGTCGGTTTCGACATGGACTACACCTTGGCGCA ATACTTCACGGCCTTCGACCAGCTTGCTTTCGACGGCGCCAAGGAGAAGC TGGTCAAGGACCTGGGATACCCGCAAGACGTCGACGGTTTCATGTACGAT CCGGAGCATTTTTCGAGGGGACTGGTCATCGACCTGGAGCGAGGTGAGAT G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75417:26..226-

>mRNA_Ecto-sp13_S_contig75417.18730.1 ID=mRNA_Ecto-sp13_S_contig75417.18730.1|Name=mRNA_Ecto-sp13_S_contig75417.18730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75417:26..226- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACTACACCTTGGCGCAATACTTCACGGCCTTCGACCAGCTTGCTTT
CGACGGCGCCAAGGAGAAGCTGGTCAAGGACCTGGGATACCCGCAAGACG
TCGACGGTTTCATGTACGATCCGGAGCATTTTTCGAGGGGACTGGTCATC
GACCTGGAGCGAGGTGAGATG
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