mRNA_Ecto-sp13_S_contig75412.18729.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75412.18729.1
Unique NamemRNA_Ecto-sp13_S_contig75412.18729.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig75412.18729.1 vs. uniprot
Match: D7G5L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L8_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.090e-33
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:   19 RCEEFAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQV 204
            RCEEFAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQ+
Sbjct:  358 RCEEFAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQI 419
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BLAST of mRNA_Ecto-sp13_S_contig75412.18729.1 vs. uniprot
Match: A0A6H5KMB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB3_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.560e-32
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:   19 RCEEFAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQV 204
            RCEEFAQAI GLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQ+
Sbjct:  195 RCEEFAQAINGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQI 256
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BLAST of mRNA_Ecto-sp13_S_contig75412.18729.1 vs. uniprot
Match: A0A835YNU2_9STRA (Exocyst complex component Sec6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.350e-14
Identity = 34/60 (56.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:   25 EEFAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQV 204
            ++FA+AI  LN+ YL RIKAQI+KWV NL+AQ  E+   ++G ++TT PDDMFNL+N+Q+
Sbjct:  378 DKFAKAIVDLNSMYLKRIKAQIMKWVHNLKAQEPELIQSSDGKWLTTFPDDMFNLVNVQI 437
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BLAST of mRNA_Ecto-sp13_S_contig75412.18729.1 vs. uniprot
Match: F0Y5W6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5W6_AURAN)

HSP 1 Score: 53.5 bits (127), Expect = 1.380e-6
Identity = 31/69 (44.93%), Postives = 38/69 (55.07%), Query Frame = 1 
Query:    1 LRRRPPRCEEFAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQVG 207
            LR R P  + FA A   L   YL RI  Q+  W   +RA+  E + D  G  VTT P+DMF +I MQVG
Sbjct:  556 LRPRGP-AKAFATAGAFLMGEYLDRIAKQVESWFVAIRARKAEPRADPAGRLVTTRPEDMFQVITMQVG 623
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BLAST of mRNA_Ecto-sp13_S_contig75412.18729.1 vs. uniprot
Match: A0A8J2SHR9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHR9_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.320e-5
Identity = 24/58 (41.38%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:   31 FAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQV 204
            F +A   L A YL R+  Q+  W  N+RA+    +LD  G  VTT P+DMF ++ +QV
Sbjct:  616 FNEAAEKLMAQYLARVGDQVEGWFGNIRAKKAAPRLDEHGRPVTTRPEDMFQIVQLQV 673
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75412.18729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G5L8_ECTSI2.090e-3398.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMB3_9PHAE3.560e-3296.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNU2_9STRA1.350e-1456.67Exocyst complex component Sec6-domain-containing p... [more]
F0Y5W6_AURAN1.380e-644.93Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SHR9_9STRA2.320e-541.38Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75412contigEcto-sp13_S_contig75412:208..414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score127.9
Seed ortholog evalue1.9e-27
Seed eggNOG ortholog2880.D7G5L8
Preferred nameExoc3l2
Model size207
KEGG koko:K06110,ko:K19988
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.exocyst localization
EggNOG OGsCOG5173@1,KOG2286@2759
Cds size207
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464022.5786076-CDS-Ecto-sp13_S_contig75412:207..4141681464022.5786076-CDS-Ecto-sp13_S_contig75412:207..414Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75412 208..414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75412.18729.1prot_Ecto-sp13_S_contig75412.18729.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75412 208..414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75412.18729.1

>prot_Ecto-sp13_S_contig75412.18729.1 ID=prot_Ecto-sp13_S_contig75412.18729.1|Name=mRNA_Ecto-sp13_S_contig75412.18729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
LRRRPPRCEEFAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEG
HYVTTLPDDMFNLINMQVG
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mRNA from alignment at Ecto-sp13_S_contig75412:208..414+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75412.18729.1 ID=mRNA_Ecto-sp13_S_contig75412.18729.1|Name=mRNA_Ecto-sp13_S_contig75412.18729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75412:208..414+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCGACGACGACCCCCCAGGTGCGAAGAGTTCGCGCAGGCCATCGGCGG
GCTGAACGCCGCCTACCTCACCCGCATCAAGGCGCAGATCATCAAGTGGG
TCCAGAACCTTCGGGCGCAGCACCTGGAGGTGCAGCTCGATGCTGAGGGC
CACTATGTGACTACTCTCCCCGACGACATGTTCAACCTCATCAACATGCA
GGTTGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75412:208..414+

>mRNA_Ecto-sp13_S_contig75412.18729.1 ID=mRNA_Ecto-sp13_S_contig75412.18729.1|Name=mRNA_Ecto-sp13_S_contig75412.18729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75412:208..414+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCGACGACGACCCCCCAGGTGCGAAGAGTTCGCGCAGGCCATCGGCGG
GCTGAACGCCGCCTACCTCACCCGCATCAAGGCGCAGATCATCAAGTGGG
TCCAGAACCTTCGGGCGCAGCACCTGGAGGTGCAGCTCGATGCTGAGGGC
CACTATGTGACTACTCTCCCCGACGACATGTTCAACCTCATCAACATGCA
GGTTGGT
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