mRNA_Ecto-sp13_S_contig7541.18728.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7541.18728.1
Unique NamemRNA_Ecto-sp13_S_contig7541.18728.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7541.18728.1 vs. uniprot
Match: D8LIA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA8_ECTSI)

HSP 1 Score: 530 bits (1364), Expect = 7.080e-179
Identity = 289/373 (77.48%), Postives = 302/373 (80.97%), Query Frame = 2 
Query:  233 MNASELPVHYHDVVGVAVVIGDAGYQPQEVFRYPFFNEDPARRSLGRFDRIPPEILTKLLKTTFSGSGLSGELLEIVFDDVRLISRPVNLFRGGGDERTEMFFSLVFVVSSEYYPRRQLYPPSRLPKRPRRKEMNSTAPPPGTITADASDEGGGARGLGEDFEMSASGPAEGQGDGEWGAVEAKEEEAWGGEEEGGLWPGRAGSERERGHGVDLALLRGAVMMVSRAMGHEEWKNGYISREVKHLLEKKDRRTGDTEKFIADMKKFFDMRDDALNNGTDLYMNFGGRLYGDARQYSPDEMKARGDERWQESVMQQENQLAQDMRKLYDGLTRGKPFEMKIKRSSELSINVTVQAEIPATRRFETLILREERHM 1351
            MNAS+LPVHYHDVVGVAV+I                  DPARRSLG FDRIPP+ILTKLLKTTFSGSGLSGELLEIVFDD+ LISRPVNLFRGGGD+RTEMFFSLVFVVS                               G   ADA DEGGG RGLGEDFEMSASGPAEG G+ EWGAVEAKEEEA G EEEGGLWPG AGSERER HG +LALLRGAVMMVSRAMGHEEWKNGYISREVKHLL+KKDRRTGDTEKFIADM+KF DM DD L NGT LYMNFGGRLYG ARQYSPDEMKARGDERWQESVMQ ENQLAQD+R LYDGLTRG+PFEMKIKRSSELSINVTVQAEIPATRR+ETLILREERH+
Sbjct:    1 MNASDLPVHYHDVVGVAVII------------------DPARRSLGHFDRIPPKILTKLLKTTFSGSGLSGELLEIVFDDIHLISRPVNLFRGGGDDRTEMFFSLVFVVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVTAADAPDEGGGVRGLGEDFEMSASGPAEGDGNAEWGAVEAKEEEALGREEEGGLWPGAAGSERERDHGANLALLRGAVMMVSRAMGHEEWKNGYISREVKHLLDKKDRRTGDTEKFIADMEKFIDMHDDTLYNGTGLYMNFGGRLYGGARQYSPDEMKARGDERWQESVMQ-ENQLAQDVRTLYDGLTRGEPFEMKIKRSSELSINVTVQAEIPATRRYETLILREERHI 354
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7541.18728.1 vs. uniprot
Match: A0A6H5K0B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0B6_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 6.290e-82
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 2 
Query:  896 MMVSRAMGHEEWKNGYISREVKHLLEKKDRRTGDTEKFIADMKKFFDMRDDALNNGTDLYMNFGGRLYGDARQYSPDEMKARGDERWQESVMQQENQLAQDMRKLYDGLTRGKPFEMKIKRSSELSINVTVQAEIPATRRFETLILREERHM 1351
            MMVSRAMGHEEWKNGYISREVKHLLEKKDRRTGDTEKFIADM+KF DMRDDAL NGT LYMNFGGRL+G ARQYSPDEMKARGDERWQESVM+ ENQLAQDMRKLYDGLTRG+PFEMKIKRSSELSINVTVQAEIPATRR+ETLILREERH+
Sbjct:    1 MMVSRAMGHEEWKNGYISREVKHLLEKKDRRTGDTEKFIADMEKFIDMRDDALYNGTGLYMNFGGRLHGGARQYSPDEMKARGDERWQESVME-ENQLAQDMRKLYDGLTRGRPFEMKIKRSSELSINVTVQAEIPATRRYETLILREERHI 151
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7541.18728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIA8_ECTSI7.080e-17977.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0B6_9PHAE6.290e-8292.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7541contigEcto-sp13_S_contig7541:744..7258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score539.3
Seed ortholog evalue1.5e-150
Seed eggNOG ortholog2880.D8LIA8
Preferred nameNPRL3
Model size1354
KEGG koko:K20406
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001568,GO:0001944,GO:0003006,GO:0003205,GO:0003231,GO:0003279,GO:0003281,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005773,GO:0005774,GO:0005776,GO:0006950,GO:0006995,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007507,GO:0008150,GO:0008361,GO:0009267,GO:0009605,GO:0009653,GO:0009888,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010506,GO:0010507,GO:0010508,GO:0010646,GO:0010648,GO:0010896,GO:0010898,GO:0014706,GO:0016020,GO:0016043,GO:0016239,GO:0016241,GO:0016242,GO:0019216,GO:0019222,GO:0019898,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0031090,GO:0031312,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031331,GO:0031667,GO:0031668,GO:0031669,GO:0031929,GO:0032006,GO:0032007,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0033043,GO:0033554,GO:0034198,GO:0035239,GO:0035295,GO:0035556,GO:0035859,GO:0035904,GO:0035909,GO:0038202,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043562,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044754,GO:0045792,GO:0045834,GO:0048468,GO:0048477,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048646,GO:0048731,GO:0048738,GO:0048844,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051128,GO:0051704,GO:0051716,GO:0060021,GO:0060537,GO:0060840,GO:0061700,GO:0065007,GO:0065008,GO:0071496,GO:0071840,GO:0072358,GO:0072359,GO:0080090,GO:0090066,GO:0090207,GO:0090208,GO:0097042,GO:0098588,GO:0098805,GO:0098852,GO:1902115,GO:1902531,GO:1902532,GO:1903432,GO:1904262,GO:1904766,GO:1990130,GO:1990928,GO:2000785
Exons8
EggNOG free text desc.TORC1 signaling
EggNOG OGsKOG3830@1,KOG3830@2759
Ec32 ortholog descriptionNitrogen permease regulator 3
Ec32 orthologEc-24_001440.2
Cds size1122
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7541.18728.1prot_Ecto-sp13_S_contig7541.18728.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7541 744..7026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464022.457327-CDS-Ecto-sp13_S_contig7541:743..8401681464022.457327-CDS-Ecto-sp13_S_contig7541:743..840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7541 744..840 -
1681464022.4680004-CDS-Ecto-sp13_S_contig7541:1870..19531681464022.4680004-CDS-Ecto-sp13_S_contig7541:1870..1953Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7541 1871..1953 -
1681464022.4818845-CDS-Ecto-sp13_S_contig7541:2458..26931681464022.4818845-CDS-Ecto-sp13_S_contig7541:2458..2693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7541 2459..2693 -
1681464022.4924822-CDS-Ecto-sp13_S_contig7541:3397..36151681464022.4924822-CDS-Ecto-sp13_S_contig7541:3397..3615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7541 3398..3615 -
1681464022.506884-CDS-Ecto-sp13_S_contig7541:4212..43651681464022.506884-CDS-Ecto-sp13_S_contig7541:4212..4365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7541 4213..4365 -
1681464022.51739-CDS-Ecto-sp13_S_contig7541:5119..51881681464022.51739-CDS-Ecto-sp13_S_contig7541:5119..5188Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7541 5120..5188 -
1681464022.5280151-CDS-Ecto-sp13_S_contig7541:5757..59091681464022.5280151-CDS-Ecto-sp13_S_contig7541:5757..5909Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7541 5758..5909 -
1681464022.5382166-CDS-Ecto-sp13_S_contig7541:6911..70261681464022.5382166-CDS-Ecto-sp13_S_contig7541:6911..7026Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7541 6912..7026 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464022.5483205-UTR-Ecto-sp13_S_contig7541:7026..72581681464022.5483205-UTR-Ecto-sp13_S_contig7541:7026..7258Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7541 7027..7258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7541.18728.1

>prot_Ecto-sp13_S_contig7541.18728.1 ID=prot_Ecto-sp13_S_contig7541.18728.1|Name=mRNA_Ecto-sp13_S_contig7541.18728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=374bp
MNASELPVHYHDVVGVAVVIGDAGYQPQEVFRYPFFNEDPARRSLGRFDR
IPPEILTKLLKTTFSGSGLSGELLEIVFDDVRLISRPVNLFRGGGDERTE
MFFSLVFVVSSEYYPRRQLYPPSRLPKRPRRKEMNSTAPPPGTITADASD
EGGGARGLGEDFEMSASGPAEGQGDGEWGAVEAKEEEAWGGEEEGGLWPG
RAGSERERGHGVDLALLRGAVMMVSRAMGHEEWKNGYISREVKHLLEKKD
RRTGDTEKFIADMKKFFDMRDDALNNGTDLYMNFGGRLYGDARQYSPDEM
KARGDERWQESVMQQENQLAQDMRKLYDGLTRGKPFEMKIKRSSELSINV
TVQAEIPATRRFETLILREERHM*
back to top

mRNA from alignment at Ecto-sp13_S_contig7541:744..7258-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7541.18728.1 ID=mRNA_Ecto-sp13_S_contig7541.18728.1|Name=mRNA_Ecto-sp13_S_contig7541.18728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6515bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7541:744..7258- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGATCGCTGCTGCTGCTGCTGCTGCAGCTGCTGCTGAGGTGTGACTGA
AAGCGAATTTTCGTCAGCCCTTCTCCTCTGATACGAAAAGATTTGAAGCC
TTTGTGCGGTGGTAGAACGCAGTATAGCCGGAGTGTACAACACAGCAGTC
AGCGCCGAGCATAGAGCTACTTTTTTTGCAAGGAGGAATTCGCAGCAGGC
ACCGCTGCAGCTACAGCCACAGCAAACAACTCATGAACGCGAGCGAGCTT
CCGGTGCACTACCATGATGTGGTGGGCGTTGCGGTCGTCATCGGCGACGC
GGGATACCAGCCGCAAGAGGTGTTTCGCTACCCTTTCTTCAACGAAGGTG
ATTGTTGTACGCGTCGCTCTCTCTCTCGTGTAGATTGCGCAAGATACCAC
CCCCCCCGGAACGATTTCAAAGTTCGATTGCTCTGCAGCAAAAACAGCTA
CGTTGCCTTAATTGGCGGCGTCGGAACCGTGTCTTTGTTACCTTTCCGGA
AATACTATTGTTCATAATATGGTCTCGGCATCCTCGTGTTCATGGAGTGA
TTTTGGTCGAGCTGTTCATTGTCACAGCGGGTGTGGTATCTTGTGCAAGC
CAAGATGAGATAATCATGATCTCAGAGAGTCGGATGACCGAGAGGACGCT
CCTTCTCCGTTCCCCTACAAAATACTTATCGTTTGGACCGTACAGCCAGC
ACGTCGCCCGAGCGACCTGGTCGGGCCCCCCCTCTAGCAGCATGTGTGGC
CTGCGCACAGTAGTACTGCTGGAGTTCATGGCACCCAAATTTGGAGTTTT
CCTCCACGAGGAGAATAACCGGGCACAGAGGAACGTCCCGCATGCTACCT
ACGGTACTACTCCGTCCTCTCTACGGGAAGTATGGTATGACAATATATCT
AAGGAAAGCTGTGCATGGCTGCAAGATGCTGCCGAACACTGGCACCGACC
AATGCCTGCTTTAGCTGAAATGTGGCCCCACACGATCACGCTCACGAGAT
CTCCGGCACATTGTACCCAAAAAGTGCTTCTGTCTTGTCAACACAATACA
GGGTTTCACGTTAGCACTGTTTTTGACACACTAGTCCTGAGGCACTCCTG
TCAGTATTTCTTTATTTAGTGCTGCACGCACATATCGCTGTATTTTGGAT
CACTCCATGGCCGCTGAACCCCTGCCGCTAACTTCTAGCGAGATCTTTAA
CTTGTACTCTCGATTTTCACCCCCCACCCCCCAAAACACCACCGCTAACA
ATGCCTCCCATTAGCCTTGTCGCTCTCGTCCCCTAGAAGCCCTCTAAATG
CCCCGCCCCCCCCCCCCACCACCCCACCCCACGCTCGCGAAACATGTAGA
CCCCGCGCGGCGCTCTCTTGGCCGCTTCGATAGAATCCCCCCGGAGATCT
TAACGAAGCTGCTCAAGACGACCTTCAGCGGCAGCGGCTTGTCGGGCGAG
CTGCTGGAAATTGTGTTCGACGATGTCCGCCTCATCAGTCGTCCGGTCAA
TGTGAGTGGTCCGTCATGGTTCAGAGCCGTCTTTTTCCGGGACGTCTTCT
TTTGTTTTTTTTGTTCATCGGCAGTAGGAGTCACCAGCATTCCTCTTTTT
TTTGTTCTGCTTCTCGCGGGAATCTAATTTGCCATCCCCGTTAGGTCCCA
ATGCCCACACCACTTGCCATCGACTGGCGTGATCTTGTTTTTTTTTACCG
AAAAACGAAGTTCTGACAACATAAAAACACTCAGACAACAAATTTATTCA
TGTTCATCCACAGACAAGAGTCGGGGAAACAATTCAGTGAATTCGTAGCG
TTGGCGGACATTTACCTGTTTTTCTCGATTCCCCGAGCAGCATGTAGCGA
TATCTCCCTTGTGGGGAACAAGGTCTACGAGGCAATCTGGCGGCCATCTT
GCGCATCTGACTATGCATAATATGCCGCGAGCAGCATACAGCGATGTCTC
ACTTGTGGGGACAGGCGGTACGAGGCAATTTGGCGGCCATCTTGTGCGTC
TGACTATGCATAACATGCCGCCTCCTTGTTTGTGCCTGTCCGCCCCTGCC
GTATGATATCAATGATTCAGCTGTTTCGAGGAGGCGGAGATGAGCGAACC
GAGATGTTCTTCAGTCTCGTGTTTGTGGTCTCATCAGAGGTACGTAGGTG
TGTTGTTCCAGAGAGGGAGGCGGGGTCCCGCACATGTCGCAGTCGCCAAT
GATGGCGAATAATCGTTTTTCTCCCGGTGGTGGTGTACATCTTGGCGAAA
AGAGAGAGAGGATACACTTCGAGCACGTGGGTTGCACACTCGAACACATC
CAATCGGAGAGGAGAAGAGACAGACCAAGAACGCGCAGATAATTGCGTGT
GGACTTTCTCACACCGTCCCGACGAAGTGGAAAATACCAAGAGAAACAGC
ACAGGGAGACGAGAGACGGCACACACCAACTTATGTTGTCCGCGTTGCAA
CGTCTCGAATTCCTCACGAGATGACCAAAAATTGGGGGTGTATTTCCCGG
TCCCCGCGCCGCCTTGACGTCGTGAACCCCCCCCCCCGCCCCCCCGCCCG
CTACAACAGTATGACATCGGTTCTCCCAAGGTGTATCTTGTGTGTCGGTT
GGTTGGCGTGTGTTGTTTTTTCATGTCTTGTTCGCTGCACGAAAAACGCT
CGTTCCACCTCCCTATCTGTTGTCCCCCCCCCGCTCCCGCACCTCTCCCT
TGTCGCTCACTCTTCGCCCTCGTGTTCGCGATGCAAGCCGATACCCAACC
GTTGCACCCCGTATCTCGCCTTGTACTCACCATCATCCTATCCCCCCCCC
CGCTTCTGCTCACTCTCTACTTCTCTGAGTTCCTACCCCCCGTCCCCCCC
CCCCCCCCCCCACCCGAAACCGATTTCTGCACCAACACCACAGTACTACC
CACGGCGTCAGCTCTACCCCCCGAGCCGGCTTCCGAAGCGTCCGCGCCGC
AAGGAAATGAATTCTACGGCGCCCCCTCCAGGCACAATCACGGCCGACGC
TTCCGACGAGGGAGGAGGTGCACGGGGTTTAGGGGAGGATTTCGAGGTTA
GTTTGCACCGATTGGACTCGTGCCGTTCGGTGTGTGTGTTTTGTTAGCTG
GCATCGACCGCGGTACCGGGTTGACCCACGAAGTTACACCGGCGGGGTAC
AACCAAGGTTCCTTGAAGGGGGGCGCGGCAAGATTGCGCAAAACGCGCTG
AAATGCGAGCGAATTCCAAAACGAAACTGTGTACACATTGTTTCTTGAGA
GGTACGACACACATGCTCTCTGCCGAACCTAGGACGCCACTGATGCGAAA
TGAGCGTATGCGTTTTAGTTCCACTGCTGTGAGCACGCATCTACGTAGAT
ACAGGGAGTGGTCCCGCTATTGTCCGGGTAATAACCACCCGCTTTCGCCC
GCGTTGTAGGGAATCACCCGCAATATTCGATGTGTTGAACGCCTTGGTTG
TTCCATCTGTGCCAGTCCATTTTACCTGCTCTACATTACCTCGGGAGCCC
GCACTATGGCGTCGGGCCCCTGACCGTATGCATACGCATATGCCCGCCCT
CCGTTGTACAACTTGTTTTCGGCAACACTAGGCTTGAATTGACGTACTCT
TTCTCTCTCTTTCTCTGCGACTCTCACCCCCCCCTCCCCTCAGATGTCGG
CGAGCGGTCCAGCAGAGGGGCAGGGGGACGGAGAGTGGGGCGCCGTCGAG
GCGAAGGAAGAGGAGGCCTGGGGGGGGGAGGAGGAAGGCGGGCTTTGGCC
GGGGAGAGCCGGGAGCGAGAGGGAGAGGGGCCACGGGGTTGACCTCGCTC
TTCTGCGCGGGGCGGTTATGATGGTGTCCAGAGCAATGGGCCACGAGGAA
TGGAAGAACGGGTGAGATGAGGGAAGGGAGAGCGGAATCATTAAGTTTAT
CGTTTCTGTCTCTCTTGAATTTGTGTTGGTTGGGATTTTCTTTTTGGCAT
GCGGCGGGAGCGCTTCGTTTGGAACTGGAAGCAGAGGCAAAACATGGCGG
CGGGGAGGAAAGCATTCCTTGTTTCTCAGGATCTTGTCAAAGATGACTTG
TAAAGCCCCCGCGCTCTCCTGACACATGAGGACTTCAAGGCGACGACCGC
AAGGCAATGAAAACTCCGATGTTTGCAGAAAACCCTGACGATGCTATCTC
TTGGTGGCAAAACCAAGGACGGCGTTCCTCTGTTCCCGACAACGGTTACG
GCAACCAGCATCAACGTGAGCACGACCACAGCACCACCCATAATCACCAC
CAGCAGTAGACACCAAGCCGGAAGAACGTCCTGATCAGTCTCTGGCTAGA
ATATTTTCCGCCCTCTCGTTTCCGACACCCGCCACTTGTCTGCCTCAGCT
GCATTTACAAGGTGGGGAAACACTTCTCTCTCTTAAACAAGATCCTCTCC
CCCTCTCCTTTCCCCCTCTCCTCTTCGATGCTGTCTGTCTGCTTGTCTGT
CTTTCTGTCTTTCTGTCTGCCTGTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCCCCGTCCCTCTCTCCCTCT
CCCCCTCGCTCTCAGCTACATCAGCAGGGAGGTCAAACACCTACTCGAGA
AGAAAGACCGACGCACCGGCGACACGGAGAAGTTCATCGCTGACATGAAG
AAGTTCTTCGACATGCGTGACGATGCCCTCAACAATGGGACGGATCTCTA
CATGAACTTCGGTGGCAGGCTGTACGGGGACGCTCGTCAGTACTCCCCGG
ACGAGATGAAGGCGAGGGGGGACGAGAGATGGCAGGAATCGGTCATGCAG
GTGGGTGTTGCTGCCAGTGTTGTTGTTGCTGTTGCTGTTGCTGTTGCTGT
TGCTGTTGCTGTTGCTATTGCTGTTGCTGCTGCTGCTGCTGTTGGTGTTA
TTGTAAGCAATGGTTGTTCCGGGGTTTTGTTTTTTTTCAGCCGCCGTTCA
TGAAGCTTCTTCCTCTTGCCCCCTTCGCAAGAACTATGCATCACCGATGA
TGGGGAGCACACCGCACCAATTCGCCAAGGTATCGCCGCCATGCATGCCT
CTGAAGTAATAACTCTCGTCGCTCACACACACACACACCCCTGCCTCTCG
AAACGGGTGCACGTAACCCCCAACCCCGTTCAAATATGTTGTTCGTTGTT
ATCAACGGTATCACGTATCCAACAACAACAGCCTTCCTCTCTTCCCGTCA
AGATGAGGTGTCAGCGATGCACGATACAGTAGCCAGGCAGGGCGGTTGAG
GATATGCATCCCCGAACCTCGTCCTATTTCCCGCCGCTCTGATTTTTTTT
TGGAGCAGGAGAACCAGCTGGCCCAGGACATGCGGAAGCTGTACGACGGC
CTCACAAGGGGCAAGCCATTCGAAATGAAAATCAAGAGGTGAGGTGACGA
CGATGACGCACTTGTGTAGCCCGTACGATGGGGCCTCTCTTTTCGCAATT
TAGAGCTGGCGTGGAAGGAGATTTGGCAGTTTCCATAAACCGTCCCGATT
ATTTTCACTAGGAAAGAAAGTCAAGACTTGGGGTCACGTGTTTCTGTGTC
TACATGAAGGTCGGATACGAAGGGCCGTTGGATGCTTGTCACCGTTGAAG
ACACCGTGACGACTGGTACCGATATCACGGTTGTATTTCGATTTGTTTGC
AGCTGGAAACGCCTCTACCCGAAGTGTCCACCTCGACCGTGTGCATGCGA
TTACCACTGGCATCGACCGCGCTCTAGACGGCTGGCCAATGAAAACACGT
CAGCCTTCAGTGCGGCTGAAATCGAAGAGTGGCATCTGTTGTGGTGACCC
ATGGTTTTGGTGTGTATGTTTCCCTTCAGTACTATCGACCGCGCCATTTG
CCCGGCCACTGAAAAGACACCGACCGCTCTTGGCGGCCCAACAAACTCGA
GGAAACGCCTCCTTGTCCCGCGGAGCCCCCTTGGGGCGGGGGGGGGGGGG
GCCCATGGGGGGCTTAAGGGACCANNNNNNNNNNCCAACACACCCCTATC
TCCCAACCACCTCCACATCAAGGCGGGCAACCACGTGCCGGCCACGTGGG
GTTTGTGTCCCATGGGAGACTTAAGAGACAAGATTGTCTGCGTTTTTTTT
TTGTTGTTTTACTTTCTCTCAAATGCTTTACAGGAGTAGATAGCTTTGTG
GAGACCCAGCGAGCGCTGAACCTCGGGGGTGGAGGAGCCGTGATGCGGCA
ATATGTCTGCAAGCCACTCGGTTCTAGCTAGCCCTTGGGTGTCGCTCCCC
GCTGGTCGCGTTCGTGTCGACAGGCTCTATGTGAATGTACGCCCTCAAGC
AAGTTATTCTACCCCCGTCCCCTTACATATTACATCTCTATACGCGCACT
TCAGCAAGCTATGTGTTCATCCGTCCCCCGCCGATGGCTGACACGCTCGA
TCGTCGATCCGTGCCCAGGTCGAGCGAGCTGTCCATCAATGTTACCGTGC
AGGCGGAGATACCAGCCACGAGAAGATTCGAGACCCTCATCTTGAGGGAG
GAGAGGCACATGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7541:744..7258-

>mRNA_Ecto-sp13_S_contig7541.18728.1 ID=mRNA_Ecto-sp13_S_contig7541.18728.1|Name=mRNA_Ecto-sp13_S_contig7541.18728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1122bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7541:744..7258- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGCGAGCGAGCTTCCGGTGCACTACCATGATGTGGTGGGCGTTGC
GGTCGTCATCGGCGACGCGGGATACCAGCCGCAAGAGGTGTTTCGCTACC
CTTTCTTCAACGAAGACCCCGCGCGGCGCTCTCTTGGCCGCTTCGATAGA
ATCCCCCCGGAGATCTTAACGAAGCTGCTCAAGACGACCTTCAGCGGCAG
CGGCTTGTCGGGCGAGCTGCTGGAAATTGTGTTCGACGATGTCCGCCTCA
TCAGTCGTCCGGTCAATCTGTTTCGAGGAGGCGGAGATGAGCGAACCGAG
ATGTTCTTCAGTCTCGTGTTTGTGGTCTCATCAGAGTACTACCCACGGCG
TCAGCTCTACCCCCCGAGCCGGCTTCCGAAGCGTCCGCGCCGCAAGGAAA
TGAATTCTACGGCGCCCCCTCCAGGCACAATCACGGCCGACGCTTCCGAC
GAGGGAGGAGGTGCACGGGGTTTAGGGGAGGATTTCGAGATGTCGGCGAG
CGGTCCAGCAGAGGGGCAGGGGGACGGAGAGTGGGGCGCCGTCGAGGCGA
AGGAAGAGGAGGCCTGGGGGGGGGAGGAGGAAGGCGGGCTTTGGCCGGGG
AGAGCCGGGAGCGAGAGGGAGAGGGGCCACGGGGTTGACCTCGCTCTTCT
GCGCGGGGCGGTTATGATGGTGTCCAGAGCAATGGGCCACGAGGAATGGA
AGAACGGCTACATCAGCAGGGAGGTCAAACACCTACTCGAGAAGAAAGAC
CGACGCACCGGCGACACGGAGAAGTTCATCGCTGACATGAAGAAGTTCTT
CGACATGCGTGACGATGCCCTCAACAATGGGACGGATCTCTACATGAACT
TCGGTGGCAGGCTGTACGGGGACGCTCGTCAGTACTCCCCGGACGAGATG
AAGGCGAGGGGGGACGAGAGATGGCAGGAATCGGTCATGCAGCAGGAGAA
CCAGCTGGCCCAGGACATGCGGAAGCTGTACGACGGCCTCACAAGGGGCA
AGCCATTCGAAATGAAAATCAAGAGGTCGAGCGAGCTGTCCATCAATGTT
ACCGTGCAGGCGGAGATACCAGCCACGAGAAGATTCGAGACCCTCATCTT
GAGGGAGGAGAGGCACATGTGA
back to top