mRNA_Ecto-sp13_S_contig75395.18726.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig75395.18726.1 vs. uniprot
Match: D7G1D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D6_ECTSI) HSP 1 Score: 291 bits (744), Expect = 1.790e-93 Identity = 151/192 (78.65%), Postives = 160/192 (83.33%), Query Frame = 1
Query: 1 QGPMACEDVDEVSGEAAKAWVSRPALGKHICFDGRYLHAAPAELALPPPSTGLDETPPPEGGLRGGDGAGRSKKRDKDGKSKVVLPGSSVDGKGGSSNTTARRRRVTFLVNVWLNHTPRTAAPLPAPTAAELGPSNLVLRLSPADFVPPTPLLVDETAAPTGPDDDGAMPWQGRRTVATKQRRFGPAKPKPE 576
+GPMACED++EVSGEAAKAWVSRPALGKHICFDGRYLHAAPA+LALPP +TGLDETPP G RDKDG+SKVVLPGSSVDGKG RRVTFLVNVWLNHTPR AAPLPAPTAAELGPSNL LRLS +DFVPP PLLVDETAAPTG DDGAMP QGRR+VATKQRRFGPAKP+PE
Sbjct: 185 KGPMACEDMEEVSGEAAKAWVSRPALGKHICFDGRYLHAAPADLALPPQTTGLDETPPL--------GGXXXXXRDKDGESKVVLPGSSVDGKGXXXXXXXXXRRVTFLVNVWLNHTPRNAAPLPAPTAAELGPSNLALRLSSSDFVPPIPLLVDETAAPTGSGDDGAMPGQGRRSVATKQRRFGPAKPEPE 368
BLAST of mRNA_Ecto-sp13_S_contig75395.18726.1 vs. uniprot
Match: A0A6H5JMS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS0_9PHAE) HSP 1 Score: 276 bits (707), Expect = 7.520e-88 Identity = 151/208 (72.60%), Postives = 157/208 (75.48%), Query Frame = 1
Query: 1 QGPMACEDVDEVSGEAAKAWVSRPALGKHICFDGRYLHAAPAELALPPPSTGLDETPPP--EGGLRGGDGAGRSKKRD--------------KDGKSKVVLPGSSVDGKGGSSNTTARRRRVTFLVNVWLNHTPRTAAPLPAPTAAELGPSNLVLRLSPADFVPPTPLLVDETAAPTGPDDDGAMPWQGRRTVATKQRRFGPAKPKPE 576
+GPMACEDVDEVSGEAAKAWVSRPALGKHICFDGRYLHAAPA+LALPPP+ LDET PP EG KDGKSKVVLPGSS+ GKG RVTFLVNVWLNHTPRTAAPLPAPTAAELGPS L LRLSPADFVPPTPLLVDETAAPTG +DDGAMP QGRRTVATKQRRFGPA +PE
Sbjct: 185 KGPMACEDVDEVSGEAAKAWVSRPALGKHICFDGRYLHAAPADLALPPPTPCLDETAPPSVEGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXKDGKSKVVLPGSSIHGKGXXXXXXXXXXRVTFLVNVWLNHTPRTAAPLPAPTAAELGPSKLALRLSPADFVPPTPLLVDETAAPTGSNDDGAMPGQGRRTVATKQRRFGPANSEPE 392
BLAST of mRNA_Ecto-sp13_S_contig75395.18726.1 vs. uniprot
Match: A0A835ZJA8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJA8_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.090e-13 Identity = 59/158 (37.34%), Postives = 77/158 (48.73%), Query Frame = 1
Query: 7 PMACEDVDEVSGEAAKAWVSRPALGKHICFDGRYLHAAPAELA-LPPPSTGLDETPPPEGGLRGGDGAGRSKKRDKDGKSKVVLPGSSVDGKGGSSNTTARRRRVTFLVNVWLNHTPRTAAPLPAPTAAELGPSNLVLRLSPADFVPPTPLLVDETAA 477
P+ C D + G + +SRPA+GKH+CFDGRYLH APA LA + P G +G RGG G+ ++ D D PG + RVTFLVNVWLN P +A PL T L + LS A PT L V+ +++
Sbjct: 178 PVTCGD--SLEGTITRCCLSRPAVGKHMCFDGRYLHGAPAALADIWPSKPGQKRPRSDDGDSRGGGGSAQA---DDD-----SAPGPDM--------------RVTFLVNVWLNRHPESADPLDDSTVKTLCQDPFPIDLSEATLRAPTVLNVNSSSS 311
BLAST of mRNA_Ecto-sp13_S_contig75395.18726.1 vs. uniprot
Match: A0A7S0XGA7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XGA7_9CHLO) HSP 1 Score: 70.5 bits (171), Expect = 1.250e-11 Identity = 50/132 (37.88%), Postives = 64/132 (48.48%), Query Frame = 1
Query: 1 QGPMACEDVDEVSGEAAKAWVSRPALGKHICFDGRYLHAAPAELALPPPSTGLDETPPPEGGLRGGDGAGRSKKRDKDGKSKVVLPGSSVDGKGGSSNTTARRRRVTFLVNVWLNHTPRTAAPLPAPTAAEL 396
Q A ++ ++V G A ++S PA GKHI FDGR+LH AP LA P T D+ GDG + +S T ++ R+TFLVNVWLNH P TA+PLP AA L
Sbjct: 40 QEDTAGKNREDVGGGEANVFLSWPAPGKHIAFDGRWLHGAPTVLAAP---TNDDDH---------GDG----------------VVDASTTPTTQKQRQTPKQPRITFLVNVWLNHVPSTASPLPDDVAAAL 143
BLAST of mRNA_Ecto-sp13_S_contig75395.18726.1 vs. uniprot
Match: A0A7S1FWT5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWT5_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 4.700e-10 Identity = 54/151 (35.76%), Postives = 63/151 (41.72%), Query Frame = 1
Query: 31 EVSGEA-AKAWVSRPALGKHICFDGRYLHAAPAELALPPPSTGLDETPPPEGGLRGGDGAGRSKKRDKDGKSKVVLPGSSVDGKGGSSNTTARRRRVTFLVNVWLNHTPRTAAPLPAPTAAELGPSNLVLRLSPADFVPPTPLLVDETAAP 480
E GE A VS PA GKH+CFDG+ LHAAP EL P ET P R RRRRVTFLVNVWLN+ P AP PA ++ +LSP + +P + D AAP
Sbjct: 123 EPGGEPIATGAVSWPAAGKHLCFDGQSLHAAPVELRGEEPREQRIETGPATPAARN-----------------------------------RRRRRVTFLVNVWLNYRPMGVAPFPA---------TMLSKLSPPEIIPDD--IFDTEAAP 227
BLAST of mRNA_Ecto-sp13_S_contig75395.18726.1 vs. uniprot
Match: A0A7R9Y7R5_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y7R5_MICPS) HSP 1 Score: 64.7 bits (156), Expect = 2.000e-9 Identity = 44/109 (40.37%), Postives = 50/109 (45.87%), Query Frame = 1
Query: 49 AKAWVSRPALGKHICFDGRYLHAAPAELALPPPSTGLDETPPPEGGLRGGDGAGRSKKRDKDGKSKVVLPGSSVDGKGGSSNTTARRRRVTFLVNVWLNHTPRTAAPLP 375
A A+VS P GKH+ FDGR+LH AP L S K DGK V G G + +RRR TFLVNVWL+H P TAAPLP
Sbjct: 86 ATAFVSYPRTGKHVAFDGRWLHGAPEAL---------------------------SAKNMSDGK---------VGGVGKWRTVSDKRRRTTFLVNVWLDHVPSTAAPLP 158
BLAST of mRNA_Ecto-sp13_S_contig75395.18726.1 vs. uniprot
Match: W7T7W1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7W1_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 2.640e-9 Identity = 49/140 (35.00%), Postives = 64/140 (45.71%), Query Frame = 1
Query: 28 DEVSGEAAKAWVSRPALGKHICFDGRYLHAAPAELALPPPSTGLDETPPPEGGLRGGDGAGRSKKRDKDGKSKVVLPGSSVDGKGGSSNTTARRRRVTFLVNVWLNHTPRTAAPLPAPTAAELGPSNLVLRLSPADFVPP 447
+++SG + AW+S PA+GKH FDGR LHAAPAEL RG + G ++G GG + R+RVT LVNVWLNH P + P+P +L+ LSP D P
Sbjct: 68 EDLSGALSGAWLSLPAVGKHTVFDGRLLHAAPAEL-------------------RG-----------------LWADGDGLEG-GGRAERKGGRKRVTLLVNVWLNHIPN-GSERPSP--------SLLQALSPCDSAAP 161
BLAST of mRNA_Ecto-sp13_S_contig75395.18726.1 vs. uniprot
Match: C1N9I7_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N9I7_MICPC) HSP 1 Score: 64.7 bits (156), Expect = 4.100e-9 Identity = 44/109 (40.37%), Postives = 50/109 (45.87%), Query Frame = 1
Query: 49 AKAWVSRPALGKHICFDGRYLHAAPAELALPPPSTGLDETPPPEGGLRGGDGAGRSKKRDKDGKSKVVLPGSSVDGKGGSSNTTARRRRVTFLVNVWLNHTPRTAAPLP 375
A A+VS P GKH+ FDGR+LH AP L S K DGK V G G + +RRR TFLVNVWL+H P TAAPLP
Sbjct: 85 ATAFVSYPRTGKHVAFDGRWLHGAPEAL---------------------------SAKNMSDGK---------VGGVGKWRTVSDKRRRTTFLVNVWLDHVPSTAAPLP 157
BLAST of mRNA_Ecto-sp13_S_contig75395.18726.1 vs. uniprot
Match: K8YX42_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YX42_NANGC) HSP 1 Score: 64.7 bits (156), Expect = 7.360e-9 Identity = 51/140 (36.43%), Postives = 63/140 (45.00%), Query Frame = 1
Query: 28 DEVSGEAAKAWVSRPALGKHICFDGRYLHAAPAELALPPPSTGLDETPPPEGGLRGGDGAGRSKKRDKDGKSKVVLPGSSVDGKGGSSNTTARRRRVTFLVNVWLNHTPRTAAPLPAPTAAELGPSNLVLRLSPADFVPP 447
+++SG + AW+S PA+GKH FDGR LHAAPAEL DE EGG + KGG R+RVT LVNVWLNH P + P+P +L+ LSP D P
Sbjct: 220 EDLSGALSGAWLSLPAVGKHTVFDGRLLHAAPAELR----GLWADEDGWEEGGR--------------------------AERKGG-------RKRVTLLVNVWLNHIPN-GSERPSP--------SLLQALSPCDSAAP 313
BLAST of mRNA_Ecto-sp13_S_contig75395.18726.1 vs. uniprot
Match: K8YUU4_NANGC (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YUU4_NANGC) HSP 1 Score: 64.7 bits (156), Expect = 7.960e-9 Identity = 51/140 (36.43%), Postives = 63/140 (45.00%), Query Frame = 1
Query: 28 DEVSGEAAKAWVSRPALGKHICFDGRYLHAAPAELALPPPSTGLDETPPPEGGLRGGDGAGRSKKRDKDGKSKVVLPGSSVDGKGGSSNTTARRRRVTFLVNVWLNHTPRTAAPLPAPTAAELGPSNLVLRLSPADFVPP 447
+++SG + AW+S PA+GKH FDGR LHAAPAEL DE EGG + KGG R+RVT LVNVWLNH P + P+P +L+ LSP D P
Sbjct: 242 EDLSGALSGAWLSLPAVGKHTVFDGRLLHAAPAELR----GLWADEDGWEEGGR--------------------------AERKGG-------RKRVTLLVNVWLNHIPN-GSERPSP--------SLLQALSPCDSAAP 335 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75395.18726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig75395.18726.1 >prot_Ecto-sp13_S_contig75395.18726.1 ID=prot_Ecto-sp13_S_contig75395.18726.1|Name=mRNA_Ecto-sp13_S_contig75395.18726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp MACEDVDEVSGEAAKAWVSRPALGKHICFDGRYLHAAPAELALPPPSTGLback to top mRNA from alignment at Ecto-sp13_S_contig75395:28..651+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig75395.18726.1 ID=mRNA_Ecto-sp13_S_contig75395.18726.1|Name=mRNA_Ecto-sp13_S_contig75395.18726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75395:28..651+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75395:28..651+ >mRNA_Ecto-sp13_S_contig75395.18726.1 ID=mRNA_Ecto-sp13_S_contig75395.18726.1|Name=mRNA_Ecto-sp13_S_contig75395.18726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75395:28..651+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |