mRNA_Ecto-sp13_S_contig75387.18725.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75387.18725.1
Unique NamemRNA_Ecto-sp13_S_contig75387.18725.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig75387.18725.1 vs. uniprot
Match: D8LE93_ECTSI (G-patch domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE93_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 4.740e-33
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1
Query:    1 SGFAKGMMAKMGWAEGQGLGKEEQGRSTYVQVKKKDDNSGLGKEKAQQNKVNDQWYFNAFDS 186
            SGFAKGMMAKMGWAEGQGLGKEEQGRSTYVQVKKKDDNSGLGKEKAQQNKVNDQWYFNAFDS
Sbjct:   27 SGFAKGMMAKMGWAEGQGLGKEEQGRSTYVQVKKKDDNSGLGKEKAQQNKVNDQWYFNAFDS 88          
BLAST of mRNA_Ecto-sp13_S_contig75387.18725.1 vs. uniprot
Match: A0A835Z8F6_9STRA (G-patch domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 9.990e-16
Identity = 35/61 (57.38%), Postives = 51/61 (83.61%), Query Frame = 1
Query:    1 SGFAKGMMAKMGWAEGQGLGKEEQGRSTYVQVKKKDDNSGLGKEKAQQNKVNDQWYFNAFD 183
            S F++ MM KMGW EGQGLGK+ QG ++Y++VK+K+D++GLG+EK ++ K  +QWYFNAF+
Sbjct:   26 SSFSQRMMTKMGWQEGQGLGKDGQGMNSYIKVKRKEDDAGLGREKQEREKAANQWYFNAFE 86          
BLAST of mRNA_Ecto-sp13_S_contig75387.18725.1 vs. uniprot
Match: A0A1W0A5E1_9STRA (G-patch domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5E1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.770e-13
Identity = 31/61 (50.82%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    1 SGFAKGMMAKMGWAEGQGLGKEEQGRSTYVQVKKKDDNSGLGKEKAQQNKVNDQWYFNAFD 183
            S FAK  MAKMGW EG+GLGK+EQG +T+++VK++++N+G+G E A+  + ++QW++N +D
Sbjct:   30 SSFAKKQMAKMGWTEGKGLGKQEQGIATHIKVKRREENAGVGTEAAKTEEQSNQWWYNVYD 90          
BLAST of mRNA_Ecto-sp13_S_contig75387.18725.1 vs. uniprot
Match: A0A6G0WK15_9STRA (G-patch domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WK15_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.580e-13
Identity = 30/62 (48.39%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    1 SGFAKGMMAKMGWAEGQGLGKEEQGRSTYVQVKKKDDNSGLGKEKAQQNKVNDQWYFNAFDS 186
            S FAK  MAKMGW EG+GLGK EQG +T+++VK++D+N G+G E  ++   ++QW++N +++
Sbjct:   28 SSFAKRQMAKMGWTEGKGLGKNEQGMATHIRVKRRDENMGVGVESKEKEDASNQWWYNVYNN 89          
BLAST of mRNA_Ecto-sp13_S_contig75387.18725.1 vs. uniprot
Match: A0A067CL68_SAPPC (G-patch domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CL68_SAPPC)

HSP 1 Score: 68.9 bits (167), Expect = 8.280e-13
Identity = 30/61 (49.18%), Postives = 51/61 (83.61%), Query Frame = 1
Query:    1 SGFAKGMMAKMGWAEGQGLGKEEQGRSTYVQVKKKDDNSGLGKEKAQQNKVNDQWYFNAFD 183
            S FAK  MAKMGW++G+GLGKEEQG +T+++VK++++N+G+G E A+  + ++QW++N ++
Sbjct:   30 SSFAKKQMAKMGWSQGKGLGKEEQGIATHIKVKRREENTGVGTEAAKTEEQSNQWWYNVYN 90          
BLAST of mRNA_Ecto-sp13_S_contig75387.18725.1 vs. uniprot
Match: A0A485LLF5_9STRA (Aste57867_22381 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLF5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 5.850e-12
Identity = 29/62 (46.77%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    1 SGFAKGMMAKMGWAEGQGLGKEEQGRSTYVQVKKKDDNSGLGKEKAQQNKVNDQWYFNAFDS 186
            S FAK  MAKMGW EG+GLGK EQG +T+++VK++++N G+G E  ++ +  +QW++N +++
Sbjct:   30 SSFAKRQMAKMGWTEGKGLGKNEQGMATHIKVKRREENMGVGVETKEKEEQTNQWWYNVYNN 91          
BLAST of mRNA_Ecto-sp13_S_contig75387.18725.1 vs. uniprot
Match: A0A8K1CNH9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNH9_PYTOL)

HSP 1 Score: 67.0 bits (162), Expect = 6.150e-12
Identity = 30/61 (49.18%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 SGFAKGMMAKMGWAEGQGLGKEEQGRSTYVQVKKKDDNSGLGKEKAQQNKVNDQWYFNAFD 183
            S FA+  M KMGW +G+GLGK+EQG +TYV+VKK+++N G+G E  +  +  +QW++N +D
Sbjct:   33 SAFARKQMEKMGWTDGKGLGKDEQGMTTYVRVKKREENMGVGGETVKVEQQQNQWWYNVYD 93          
BLAST of mRNA_Ecto-sp13_S_contig75387.18725.1 vs. uniprot
Match: A0A2D4CIK4_PYTIN (G-patch domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIK4_PYTIN)

HSP 1 Score: 66.2 bits (160), Expect = 1.440e-11
Identity = 30/61 (49.18%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 SGFAKGMMAKMGWAEGQGLGKEEQGRSTYVQVKKKDDNSGLGKEKAQQNKVNDQWYFNAFD 183
            S FA+  M KMGW+EG+GLGK EQG +TYV+VKK++++ G+G E  +  +  +QW++N +D
Sbjct:   38 SAFARKQMEKMGWSEGKGLGKNEQGMATYVRVKKREESMGIGVEAVKVQEQQNQWWYNVYD 98          
BLAST of mRNA_Ecto-sp13_S_contig75387.18725.1 vs. uniprot
Match: W4GKL0_9STRA (G-patch domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GKL0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.740e-11
Identity = 28/62 (45.16%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    1 SGFAKGMMAKMGWAEGQGLGKEEQGRSTYVQVKKKDDNSGLGKEKAQQNKVNDQWYFNAFDS 186
            S FAK  M KMGW EG+GLGK+EQG +T+++VK++++N+G+G E  ++    +QW++N +++
Sbjct:   30 SSFAKRQMEKMGWTEGKGLGKDEQGMATHIKVKRREENAGVGVETKEKEDQTNQWWYNVYNN 91          
BLAST of mRNA_Ecto-sp13_S_contig75387.18725.1 vs. uniprot
Match: K3WD65_GLOUD (G-patch domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WD65_GLOUD)

HSP 1 Score: 65.9 bits (159), Expect = 2.140e-11
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    7 FAKGMMAKMGWAEGQGLGKEEQGRSTYVQVKKKDDNSGLGKEKAQQNKVNDQWYFNAFD 183
            FA+  M KMGW EG+GLGKEEQG  T+V+VKK++++ G+G EK    +  +QW++NA+D
Sbjct:   38 FARRQMEKMGWKEGKGLGKEEQGVVTHVRVKKREESMGIGVEKLNVEEQKNQWWYNAYD 96          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75387.18725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE93_ECTSI4.740e-33100.00G-patch domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835Z8F6_9STRA9.990e-1657.38G-patch domain-containing protein n=1 Tax=Tribonem... [more]
A0A1W0A5E1_9STRA1.770e-1350.82G-patch domain-containing protein n=1 Tax=Thrausto... [more]
A0A6G0WK15_9STRA5.580e-1348.39G-patch domain-containing protein n=1 Tax=Aphanomy... [more]
A0A067CL68_SAPPC8.280e-1349.18G-patch domain-containing protein n=3 Tax=Saproleg... [more]
A0A485LLF5_9STRA5.850e-1246.77Aste57867_22381 protein n=1 Tax=Aphanomyces stella... [more]
A0A8K1CNH9_PYTOL6.150e-1249.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CIK4_PYTIN1.440e-1149.18G-patch domain-containing protein n=1 Tax=Pythium ... [more]
W4GKL0_9STRA1.740e-1145.16G-patch domain-containing protein n=2 Tax=Aphanomy... [more]
K3WD65_GLOUD2.140e-1152.54G-patch domain-containing protein n=1 Tax=Globispo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75387contigEcto-sp13_S_contig75387:430..615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score113.6
Seed ortholog evalue3e-23
Seed eggNOG ortholog2880.D8LE93
Model size186
KEGG koko:K11135
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.G-patch domain
EggNOG OGs2BNPX@1,2S1Q2@2759
Cds size168
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03032
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464022.2966735-UTR-Ecto-sp13_S_contig75387:429..4471681464022.2966735-UTR-Ecto-sp13_S_contig75387:429..447Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig75387 430..447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464022.3085535-CDS-Ecto-sp13_S_contig75387:447..6151681464022.3085535-CDS-Ecto-sp13_S_contig75387:447..615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75387 448..615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75387.18725.1prot_Ecto-sp13_S_contig75387.18725.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75387 448..615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75387.18725.1

>prot_Ecto-sp13_S_contig75387.18725.1 ID=prot_Ecto-sp13_S_contig75387.18725.1|Name=mRNA_Ecto-sp13_S_contig75387.18725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MMAKMGWAEGQGLGKEEQGRSTYVQVKKKDDNSGLGKEKAQQNKVNDQWY
FNAFDS
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mRNA from alignment at Ecto-sp13_S_contig75387:430..615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75387.18725.1 ID=mRNA_Ecto-sp13_S_contig75387.18725.1|Name=mRNA_Ecto-sp13_S_contig75387.18725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75387:430..615+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGGCTTTGCCAAAGGGATGATGGCAAAAATGGGCTGGGCCGAGGGCCA GGGGCTGGGTAAGGAAGAGCAAGGCAGGTCTACGTACGTCCAGGTGAAGA AGAAGGATGACAACTCTGGCTTGGGCAAGGAAAAGGCGCAACAAAACAAA GTCAATGACCAGTGGTACTTCAACGCCTTTGACTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75387:430..615+

>mRNA_Ecto-sp13_S_contig75387.18725.1 ID=mRNA_Ecto-sp13_S_contig75387.18725.1|Name=mRNA_Ecto-sp13_S_contig75387.18725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75387:430..615+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGCAAAAATGGGCTGGGCCGAGGGCCAGGGGCTGGGTAAGGAAGA
GCAAGGCAGGTCTACGTACGTCCAGGTGAAGAAGAAGGATGACAACTCTG
GCTTGGGCAAGGAAAAGGCGCAACAAAACAAAGTCAATGACCAGTGGTAC
TTCAACGCCTTTGACTCC
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