prot_Ecto-sp13_S_contig7538.18723.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7538.18723.1
Unique Nameprot_Ecto-sp13_S_contig7538.18723.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length301
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7538.18723.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 1.980e-95
Identity = 154/271 (56.83%), Postives = 191/271 (70.48%), Query Frame = 0 
Query:    5 ISAWHFLLPVVDDITDIAVLWAESKDRRNLWWMCCFVFALADAERVVLLLVALMLLLCWVPFALCGTDESRGTGLRRVFTVLNGGRRLRLQRVF--LRFDGPAEVWGSKPASLRWPILDAVMWAVVGARSKSSALMSLCGLAGRTSVDVIEESGLGLSLIDDMVYHHPYSYLGRALFSFPYGHHLPNGI-ATRRSGVMLRAVGETLVVDTLFIVFSLTLENWDGGVSAASISLTFSILELITDLQYYATEARAEMTADGGNSTMTDVEAQV 272
            ++ WHFL+P+ DD+TD+ +L    +DR  LWW CC  F LAD ERV++LLV L+L+L WVPFAL GTDESRG         LNG   L+L+ V+   RF  P        ++LRWPILD  MW VVG+RSKSS+LM LCG+AG T VD +E+SG GLSLID +V HHPYS LGRALFS+P+GHHLP    ATRRS VM+RAVGETLVVD+LF+  SL+ E W+ GVS    SL FS+LEL+T+LQYY +EARA+M   G   T T +E  +
Sbjct:  177 VALWHFLIPIFDDVTDVILLIGTFEDRGGLWWACCGAFVLADVERVLILLVTLLLVLLWVPFALLGTDESRGERFEVALKCLNGCHDLKLETVWGGSRFVVPR-------SALRWPILDGFMWVVVGSRSKSSSLMRLCGMAGYTPVDRLEQSGFGLSLIDRIVDHHPYSLLGRALFSYPHGHHLPGSDEATRRSWVMVRAVGETLVVDSLFLALSLSSETWEDGVSIGIFSLIFSVLELLTELQYYVSEARADMVTGGEEPTSTSIEEAI 440
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7538.18723.1 vs. uniprot
Match: A0A6H5JME9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME9_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 9.400e-5
Identity = 58/212 (27.36%), Postives = 83/212 (39.15%), Query Frame = 0 
Query:  120 LDAVMWAVVGARSKSSALMSLCGLA---------GRTSVDVIEESGLGLSLIDDMVYHHPYSYLGRALFSFPYGHHLPNGIATRRSG------------------------------------------------------------------VMLRAVGETLVVDTLFIVFS-LTLENWDGGVSA-ASISLTFSILELITDLQYYATEARA 254
            LDAV+WA+VGAR++ S      GL+         G +     + +G   ++ID  V  HP+S+LG  +F    G   P+     R G                                                                  VM+R+VGETLVVD LF+  S ++   WDG ++  A IS  FS L+L+T+L+YY   A A
Sbjct:  165 LDAVLWALVGARARCSPFWRGMGLSLDLSPGQEGGDSGSGGEQAAGDFGAVIDSWVSCHPFSWLGNCVF----GRVRPSDSGCARRGCCCAGRRNLAEGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVMVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISAVFSALQLLTELRYYVKGASA 372
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7538.18723.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFA4_9PHAE1.980e-9556.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME9_9PHAE9.400e-527.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 72..300
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 50..71
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..49
NoneNo IPR availableTMHMMTMhelixcoord: 50..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7538contigEcto-sp13_S_contig7538:3075..3977 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7538.18723.1mRNA_Ecto-sp13_S_contig7538.18723.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7538 61..5724 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7538.18723.1 ID=prot_Ecto-sp13_S_contig7538.18723.1|Name=mRNA_Ecto-sp13_S_contig7538.18723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp
MTVSISAWHFLLPVVDDITDIAVLWAESKDRRNLWWMCCFVFALADAERV
VLLLVALMLLLCWVPFALCGTDESRGTGLRRVFTVLNGGRRLRLQRVFLR
FDGPAEVWGSKPASLRWPILDAVMWAVVGARSKSSALMSLCGLAGRTSVD
VIEESGLGLSLIDDMVYHHPYSYLGRALFSFPYGHHLPNGIATRRSGVML
RAVGETLVVDTLFIVFSLTLENWDGGVSAASISLTFSILELITDLQYYAT
EARAEMTADGGNSTMTDVEAQVGDPDSVDLHNSLAEARAVSFTVLAGSTT
*
back to top