mRNA_Ecto-sp13_S_contig7538.18723.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7538.18723.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE) HSP 1 Score: 328 bits (842), Expect = 1.780e-97 Identity = 169/306 (55.23%), Postives = 211/306 (68.95%), Query Frame = 1
Query: 1063 APGEALTGGALTRWQETIRDTNRKEPWFIALMTVSISAWHFLLPVVDDITDIAVLWAESKDRRNLWWMCCFVFALADAERVVLLLVALMLLLCWVPFALCGTDESRGTGLRRVFTVLNGGRRLRLQRVF--LRFDGPAEVWGSKPASLRWPILDAVMWAVVGARSKSSALMSLCGLAGRTSVDVIEESGLGLSLIDDMVYHHPYSYLGRALFSFPYGHHLPNGI-ATRRSGVMLRAVGETLVVDTLFIVFSLTLENWDGGVSAASISLTFSILELITDLQYYATEARAEMTADGGNSTMTDVEAQV 1971
AP LTG AL RWQE +R R EP ++++ ++ WHFL+P+ DD+TD+ +L +DR LWW CC F LAD ERV++LLV L+L+L WVPFAL GTDESRG LNG L+L+ V+ RF P ++LRWPILD MW VVG+RSKSS+LM LCG+AG T VD +E+SG GLSLID +V HHPYS LGRALFS+P+GHHLP ATRRS VM+RAVGETLVVD+LF+ SL+ E W+ GVS SL FS+LEL+T+LQYY +EARA+M G T T +E +
Sbjct: 142 APSRLLTGAALARWQEKVRGAGRVEPLAVSVVDFLVALWHFLIPIFDDVTDVILLIGTFEDRGGLWWACCGAFVLADVERVLILLVTLLLVLLWVPFALLGTDESRGERFEVALKCLNGCHDLKLETVWGGSRFVVPR-------SALRWPILDGFMWVVVGSRSKSSSLMRLCGMAGYTPVDRLEQSGFGLSLIDRIVDHHPYSLLGRALFSYPHGHHLPGSDEATRRSWVMVRAVGETLVVDSLFLALSLSSETWEDGVSIGIFSLIFSVLELLTELQYYVSEARADMVTGGEEPTSTSIEEAI 440
BLAST of mRNA_Ecto-sp13_S_contig7538.18723.1 vs. uniprot
Match: A0A6H5KAH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAH1_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 4.190e-8 Identity = 33/44 (75.00%), Postives = 33/44 (75.00%), Query Frame = 1
Query: 1 GTAHAGFLPDQAPTSPSAKCREVFGESHE*CAASCSGCSAFCAY 132
G HAGF PDQA TS SAK REVFGESHE CAASC SA CAY
Sbjct: 102 GGGHAGFSPDQALTSASAKRREVFGESHEGCAASCQAYSASCAY 145
BLAST of mRNA_Ecto-sp13_S_contig7538.18723.1 vs. uniprot
Match: A0A6H5JME9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME9_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 2.210e-6 Identity = 93/374 (24.87%), Postives = 134/374 (35.83%), Query Frame = 1
Query: 1174 AWHFLLPVVDDITDIAVLWAESKDRRN-LWWMCCFVFALADAERVVLLL-----VALMLLL--------------------------------CW--VPFALCGTDESRGTGLRRVFTVLN-----GGRRLRLQRVFLRFDG--PAEVWGSKPASLRWPI--LDAVMWAVVGARSKSSALMSLCGLA---------GRTSVDVIEESGLGLSLIDDMVYHHPYSYLGRALFSFPYGHHLPNGIATRRSG------------------------------------------------------------------VMLRAVGETLVVDTLFIVFS-LTLENWDGGVSA-ASISLTFSILELITDLQYYATEARA 1917
AWH ++P+ DD T + +L + R LWW+ + A ER L+L +ALM LL CW + F++ G G+ R+ LN GG P + PI LDAV+WA+VGAR++ S GL+ G + + +G ++ID V HP+S+LG +F G P+ R G VM+R+VGETLVVD LF+ S ++ WDG ++ A IS FS L+L+T+L+YY A A
Sbjct: 4 AWHVVVPIADDATSVWLLVKVAAARMGPLWWVSAAALSAAGLERAWLVLTLCAVLALMPLLGIVRIVLAALAWCARLCTFPPGTLCCLCVLGCCWRCLNFSMDG-PRCNGSTATRLLAGLNCAGGGGGXXXXXXXXXXXXXXXEPXXXXXXQRNRFAAPIFFLDAVLWALVGARARCSPFWRGMGLSLDLSPGQEGGDSGSGGEQAAGDFGAVIDSWVSCHPFSWLGNCVF----GRVRPSDSGCARRGCCCAGRRNLAEGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVMVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISAVFSALQLLTELRYYVKGASA 372
BLAST of mRNA_Ecto-sp13_S_contig7538.18723.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 2.240e-5 Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 3
Query: 3165 ALDGLWWLGQNSFFANGQNIIRLLETPGPRLLSLPSDSYSTVLDPPCGSWC 3317
A DGLWW G+ I+R L+ PGP +L LP D YST L+ CGSWC
Sbjct: 2121 ARDGLWWTGRIGAHQGDSYIVRFLDDPGPSVLPLPEDLYSTALNAVCGSWC 2171
BLAST of mRNA_Ecto-sp13_S_contig7538.18723.1 vs. uniprot
Match: A0A6H5KL08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL08_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 2.550e-5 Identity = 26/51 (50.98%), Postives = 30/51 (58.82%), Query Frame = 3
Query: 3165 ALDGLWWLGQNSFFANGQNIIRLLETPGPRLLSLPSDSYSTVLDPPCGSWC 3317
A DGLWW G I+R L+ PGP +L LP D YST L+ CGSWC
Sbjct: 325 ARDGLWWTGLIGAHQGDSYIVRFLDDPGPTVLPLPEDLYSTALNAVCGSWC 375
BLAST of mRNA_Ecto-sp13_S_contig7538.18723.1 vs. uniprot
Match: A0A6H5K6Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y7_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 4.000e-5 Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 1
Query: 1 GTAHAGFLPDQAPTSPSAKCREVFGESHE*CAASC 105
GT HAGF DQA TSPSAK RE+FGESHE CAASC
Sbjct: 206 GTEHAGFSADQALTSPSAKRREIFGESHEGCAASC 240
BLAST of mRNA_Ecto-sp13_S_contig7538.18723.1 vs. uniprot
Match: A0A6H5JKA8_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA8_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 5.830e-5 Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = -3
Query: 3 DAAHHSCDSPNTSRHFALGDVGAWSGKNPACAV 101
DAAH SCDSPN SR FALGDV AWSG+NPAC
Sbjct: 508 DAAHPSCDSPNISRRFALGDVRAWSGENPACTA 540 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7538.18723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7538.18723.1 >prot_Ecto-sp13_S_contig7538.18723.1 ID=prot_Ecto-sp13_S_contig7538.18723.1|Name=mRNA_Ecto-sp13_S_contig7538.18723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp MTVSISAWHFLLPVVDDITDIAVLWAESKDRRNLWWMCCFVFALADAERVback to top mRNA from alignment at Ecto-sp13_S_contig7538:61..5724+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7538.18723.1 ID=mRNA_Ecto-sp13_S_contig7538.18723.1|Name=mRNA_Ecto-sp13_S_contig7538.18723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5664bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7538:61..5724+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7538:61..5724+ >mRNA_Ecto-sp13_S_contig7538.18723.1 ID=mRNA_Ecto-sp13_S_contig7538.18723.1|Name=mRNA_Ecto-sp13_S_contig7538.18723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7538:61..5724+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |