mRNA_Ecto-sp13_S_contig7532.18719.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7532.18719.1
Unique NamemRNA_Ecto-sp13_S_contig7532.18719.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7532.18719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7532contigEcto-sp13_S_contig7532:2711..4818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size291
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size141
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464021.704541-UTR-Ecto-sp13_S_contig7532:2710..28581681464021.704541-UTR-Ecto-sp13_S_contig7532:2710..2858Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7532 2711..2858 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464021.718144-CDS-Ecto-sp13_S_contig7532:2858..29601681464021.718144-CDS-Ecto-sp13_S_contig7532:2858..2960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7532 2859..2960 +
1681464021.727424-CDS-Ecto-sp13_S_contig7532:4779..48181681464021.727424-CDS-Ecto-sp13_S_contig7532:4779..4818Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7532 4780..4818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7532.18719.1prot_Ecto-sp13_S_contig7532.18719.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7532 2859..4818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7532.18719.1

>prot_Ecto-sp13_S_contig7532.18719.1 ID=prot_Ecto-sp13_S_contig7532.18719.1|Name=mRNA_Ecto-sp13_S_contig7532.18719.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
MEIHHQQQQHVIHVVESGPGCCGVPKEAPCSVTGARVCAICAIIVHV
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mRNA from alignment at Ecto-sp13_S_contig7532:2711..4818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7532.18719.1 ID=mRNA_Ecto-sp13_S_contig7532.18719.1|Name=mRNA_Ecto-sp13_S_contig7532.18719.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7532:2711..4818+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGCTTTGGATAACCACAGGCCATACTCCTTCACGCAGCACACAGCCAC
AGCAGGGGAGGGGCGAAAGGCCGAAGAATTAACCTCAGTCTACACGTCTA
GACTGATAGCCAGCCATACTGCAGCGGCGCGACTCTCCCGAGTGCAAGAT
GGAGATCCACCACCAGCAGCAGCAGCACGTGATTCACGTCGTTGAGAGCG
GCCCCGGTTGCTGCGGCGTGCCCAAAGAGGCTCCATGTTCCGTCACGGGG
GTGAGAAATATTCGCTTTGCACGCGCTTGCGGCCCTTTCGTAACTTGTGG
TCCCAAGTAGGGTCTTACCAAACAAAACATATGTCTACCTCATGACTCTT
TTGGCTGTCTCGTCCTGCAAGTGGCTCTCTCACCCTGCTTGGTCTCTTCA
TATGTGCGGTTCTCTGTCATTTTACAGCATCTCTCTGCCTGTCCCTCACC
TTTCACAATGAATGACCACGGACGAGCGAGAGGAGATGTACCCTGATGGA
GCATTTCGGTGCTGAGATCCACACACATACAGCAGCAGTAGGCCCGCAGT
GTCTGAGCAGACATTGCTTGCTGCTTTAGATCGAAGAATTATGCGTTGTT
ACCGGCGCGGCCATGTTGTCCGTCGTTTGTCCACGCACCATTCGATTGAC
CAGCATACTGTACAAACACGGAGGGGCTTTTTCGTGTCAACTGTCGGTAT
ACATGCACGCAGAAACACCCCCAACAGAAACCGAGCAATCATCCCTCCTT
CGTTTCCCCACCCTGCTTGCAGAGGCGAGGATAGACTTGCAAAATGGGCC
CGCAGTTCCTGTCAAAAAGAAACGAAACTTTTGTCGTACGTCCCGACAAC
GACAACATTGCGGGGCGCAGCTCAATCTTGCCCACAACCAACCCACCCAC
AGGTTTCCGAACGAAATCAGAAGTAACGGGCTTTGAGTATATGGGCATCA
ACAGCAGTAATTGCGAGGGGAGAGTGCCAGCATGAAACATGACCACTTCT
CCACCGGCGCTACACGCCCCCCCGTGTTGTAGATCATTACTTGCCGACCC
CTTTGCGGGATTTGTGTGTGTGATGAATTTGGGGCTGTGTCTTGTTCAAA
AAAATTTAGCTCATCTTCGGGTTTCGCCCGCGGTTCGCTCCGAGACAGCC
CGAAGATGAGTCATTATTTTCAGGTGCAATGCGTGTGTGCTTACAAGTAG
GGTAGGCGTGGGTGGTGTTGCTGTTACAAATATATATGTCGTTGTATTAC
AAGTAGGTCGTTGTATGTTCACATAAAAAACCGGTCCCTGCTCAGCTACA
GTCTAACTGTACCGACGCCCCGCGGCTCCTTAATTCGGATGCCTTCTTCC
TTGGTCATCACAGGCCAGCACCCAAAAACGGTACACACTTTCTGTGATTT
GAATGAAATGCTAAATGCTACTTCGAGGTATGGATTACGCATAGAAGCCG
AACAACATTCATTCTTCTGGGAGATTATCACCTGGTGTCTCCAACACGTC
TCCTCGAGTAAACATGCCCATACATCAACTCGTCGAAGAACATAATTTTG
CAGCCCAAACAAGTATTCAGGATGAATTTGTGTCATTCGGAATGAATCCA
TCCGAGATCCGGTTCCTTGTCATGAAAACAACCTCGGTGTGGAGGCTGTT
CTGTAAGCTCGATGACAAGAACTACATCTGTCCGTGTGTTTGCGGTCGGA
GTTCGACGTTTCCACGTCTTATTTAAAACCTTGTTCTCCCGAAACGTCTC
ACGAGTACCCGTCCCCAGGTCGCCCTAGTCGGTGCTGGCACTAATCGGGT
TCCTCTCCTTTCCCGCGATATCGTTCGGGGTTCCCGTGAACGATCGCCCG
GCCCGGCCCGAAAAATATCACCCCACAAAGGATGAAAAGTTTCAATATTA
ATATTTCTAGGTCTCGCTCGATCTCAGAGAGGTGACAGTTTTCGGCAGAC
ATTGCGCCTAAGATGGAGACCACCCCAACGACACCATCAATTTCCAGACC
TTGTCGACATGACACCCGCATGCTGACAATTGCCCCCGCCCCTCAAAATT
GCTGCTTTGTTGTTCGCAGGCAAGGGTGTGTGCTATTTGTGCCATCATCG
TCCATGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7532:2711..4818+

>mRNA_Ecto-sp13_S_contig7532.18719.1 ID=mRNA_Ecto-sp13_S_contig7532.18719.1|Name=mRNA_Ecto-sp13_S_contig7532.18719.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7532:2711..4818+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGATCCACCACCAGCAGCAGCAGCACGTGATTCACGTCGTTGAGAG
CGGCCCCGGTTGCTGCGGCGTGCCCAAAGAGGCTCCATGTTCCGTCACGG
GGGCAAGGGTGTGTGCTATTTGTGCCATCATCGTCCATGTG
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