mRNA_Ecto-sp13_S_contig7531.18718.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7531.18718.1
Unique NamemRNA_Ecto-sp13_S_contig7531.18718.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7531.18718.1 vs. uniprot
Match: D8LCQ4_ECTSI (SHQ1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ4_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 5.120e-24
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 MLATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLR 147
            M ATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLR
Sbjct:    1 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLR 49
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BLAST of mRNA_Ecto-sp13_S_contig7531.18718.1 vs. uniprot
Match: A0A6H5J6M6_9PHAE (SHQ1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6M6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.290e-23
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 MLATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLR 147
            M ATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGT+FSFYCKPYLLR
Sbjct:    1 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTDFSFYCKPYLLR 49
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BLAST of mRNA_Ecto-sp13_S_contig7531.18718.1 vs. uniprot
Match: A0A835YXH0_9STRA (SHQ1 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.860e-12
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 MLATPRFKVSQTDLAVVVCIKVPHIRVGSAETHV--DGTEFSFYCKPYLLR 147
            M  TPRF V QTD  V V I+VPHIRV +AETHV  DG   SFYCKPYLL+
Sbjct:    1 MPVTPRFSVEQTDDFVCVTIRVPHIRVSAAETHVEEDGCGVSFYCKPYLLK 51
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BLAST of mRNA_Ecto-sp13_S_contig7531.18718.1 vs. uniprot
Match: A0A397ECD5_9STRA (CS domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ECD5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.250e-11
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 MLATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLL 144
            M +TPRF V+Q D  V V I VP++RV   E H+DGT F+F+CKPYLL
Sbjct:    1 MPSTPRFTVTQDDKMVYVEIHVPYVRVTEMEYHIDGTSFTFWCKPYLL 48
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BLAST of mRNA_Ecto-sp13_S_contig7531.18718.1 vs. uniprot
Match: A0A6G0XW87_9STRA (CS domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XW87_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 9.540e-11
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 MLATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLL 144
            M +TPRFKV+Q    V V I VP++RV   E H+DGT FSF+CKPYLL
Sbjct:    1 MPSTPRFKVTQDATTVFVEIHVPYVRVSEMEYHIDGTNFSFWCKPYLL 48
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BLAST of mRNA_Ecto-sp13_S_contig7531.18718.1 vs. uniprot
Match: A0A024GSK1_9STRA (CS domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSK1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.310e-10
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 MLATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLR 147
            M +TPRF+V+Q    V V I+VP++RV   E H+DG +F+FYCKPYLL+
Sbjct:    1 MPSTPRFRVTQNAQFVYVHIRVPYVRVSDMEFHIDGPDFTFYCKPYLLK 49
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BLAST of mRNA_Ecto-sp13_S_contig7531.18718.1 vs. uniprot
Match: G4ZMP3_PHYSP (CS domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZMP3_PHYSP)

HSP 1 Score: 60.5 bits (145), Expect = 4.240e-10
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 MLATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLR 147
            M+ATPRF V+Q    V V + VP +RV   E +VDG +F+FYCKPYLL+
Sbjct:    1 MVATPRFHVTQDAAWVFVHVHVPFVRVSEMEFYVDGLDFTFYCKPYLLK 49
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BLAST of mRNA_Ecto-sp13_S_contig7531.18718.1 vs. uniprot
Match: F0WR50_9STRA (Uncharacterized protein AlNc14C208G8858 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WR50_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.250e-10
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 MLATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLR 147
            M +TPRF+V+Q    V V I+VP++RV   E ++DG++F+FYCKPYLL+
Sbjct:    1 MPSTPRFRVTQNAQFVYVHIRVPYVRVSDMEFNIDGSDFTFYCKPYLLK 49
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BLAST of mRNA_Ecto-sp13_S_contig7531.18718.1 vs. uniprot
Match: A0A0P1AHJ9_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AHJ9_PLAHL)

HSP 1 Score: 61.2 bits (147), Expect = 1.160e-9
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 MLATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLR 147
            M+ATP+F V+Q    V V + VP++RV   E +VDG +F+FYCKPYLL+
Sbjct:    1 MVATPKFHVTQDTTWVFVHVHVPYVRVSDMEFYVDGVDFTFYCKPYLLK 49
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BLAST of mRNA_Ecto-sp13_S_contig7531.18718.1 vs. uniprot
Match: D0P2M6_PHYIT (CS domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P2M6_PHYIT)

HSP 1 Score: 57.0 bits (136), Expect = 2.840e-9
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 MLATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLR 147
            M+ATPRF V+Q    V V + VP +RV   E +VD  +F+F+CKPYLL+
Sbjct:    1 MVATPRFHVTQDAAWVFVHVHVPFVRVSDMEFYVDNVDFTFFCKPYLLK 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7531.18718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCQ4_ECTSI5.120e-2497.96SHQ1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5J6M6_9PHAE1.290e-2395.92SHQ1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YXH0_9STRA7.860e-1266.67SHQ1 protein-domain-containing protein n=1 Tax=Tri... [more]
A0A397ECD5_9STRA1.250e-1158.33CS domain-containing protein n=2 Tax=Aphanomyces a... [more]
A0A6G0XW87_9STRA9.540e-1160.42CS domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A024GSK1_9STRA1.310e-1055.10CS domain-containing protein n=1 Tax=Albugo candid... [more]
G4ZMP3_PHYSP4.240e-1055.10CS domain-containing protein (Fragment) n=1 Tax=Ph... [more]
F0WR50_9STRA6.250e-1053.06Uncharacterized protein AlNc14C208G8858 n=1 Tax=Al... [more]
A0A0P1AHJ9_PLAHL1.160e-953.06Uncharacterized conserved protein n=1 Tax=Plasmopa... [more]
D0P2M6_PHYIT2.840e-951.02CS domain-containing protein n=1 Tax=Phytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7531contigEcto-sp13_S_contig7531:4207..4356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score103.2
Seed ortholog evalue3.6e-20
Seed eggNOG ortholog2880.D8LCQ4
Preferred nameSHQ1
Model size150
KEGG koko:K08597,ko:K14764
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000491,GO:0000493,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051082,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090069,GO:0090071,GO:0090304,GO:1901360,GO:2000232,GO:2000233
Exons1
EggNOG free text desc.box H/ACA snoRNP assembly
EggNOG OGsKOG3247@1,KOG3247@2759
EC3.4.22.68
Cds size150
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03009,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464021.6666772-CDS-Ecto-sp13_S_contig7531:4206..43561681464021.6666772-CDS-Ecto-sp13_S_contig7531:4206..4356Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7531 4207..4356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7531.18718.1prot_Ecto-sp13_S_contig7531.18718.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7531 4207..4356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7531.18718.1

>prot_Ecto-sp13_S_contig7531.18718.1 ID=prot_Ecto-sp13_S_contig7531.18718.1|Name=mRNA_Ecto-sp13_S_contig7531.18718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
MLATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLR*
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mRNA from alignment at Ecto-sp13_S_contig7531:4207..4356-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7531.18718.1 ID=mRNA_Ecto-sp13_S_contig7531.18718.1|Name=mRNA_Ecto-sp13_S_contig7531.18718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7531:4207..4356- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGCGACGCCGCGCTTTAAGGTGTCCCAGACGGATCTTGCCGTGGT
GGTATGCATCAAGGTGCCGCACATTCGCGTAGGGAGCGCGGAGACGCACG
TGGATGGGACGGAGTTCTCCTTCTACTGCAAGCCCTACTTGCTCCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7531:4207..4356-

>mRNA_Ecto-sp13_S_contig7531.18718.1 ID=mRNA_Ecto-sp13_S_contig7531.18718.1|Name=mRNA_Ecto-sp13_S_contig7531.18718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7531:4207..4356- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGCGACGCCGCGCTTTAAGGTGTCCCAGACGGATCTTGCCGTGGT
GGTATGCATCAAGGTGCCGCACATTCGCGTAGGGAGCGCGGAGACGCACG
TGGATGGGACGGAGTTCTCCTTCTACTGCAAGCCCTACTTGCTCCGGTGA
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