mRNA_Ecto-sp13_S_contig75270.18713.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75270.18713.1
Unique NamemRNA_Ecto-sp13_S_contig75270.18713.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig75270.18713.1 vs. uniprot
Match: D7G1K2_ECTSI (Hypothetical tyrosinase-like protein F21C3.2 in chromosome I, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K2_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 1.190e-68
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:    1 AVSIMQRVPSAVGQQVYGSKYYSKDFFNRMHLYYGGREDCDHWHAGAGFVTSHIAVSLMYEQSLQAINPAITLPYWDFTIEGTFYDWSNFRSSSIFSDDWFGAAAPKN 324
            AVSIMQRVPSAVGQQVYGSKYYSKDFFNR+HLYYGGREDCDHWHAGAGFVTSHIAVSLMYEQSLQAINPAI LPYWDFTIEGTF+DWSNFRSSSIFSDDWFGAAAPKN
Sbjct:  118 AVSIMQRVPSAVGQQVYGSKYYSKDFFNRIHLYYGGREDCDHWHAGAGFVTSHIAVSLMYEQSLQAINPAIALPYWDFTIEGTFFDWSNFRSSSIFSDDWFGAAAPKN 225
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BLAST of mRNA_Ecto-sp13_S_contig75270.18713.1 vs. uniprot
Match: A0A6H5KKI9_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI9_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 2.420e-66
Identity = 104/108 (96.30%), Postives = 106/108 (98.15%), Query Frame = 1 
Query:    1 AVSIMQRVPSAVGQQVYGSKYYSKDFFNRMHLYYGGREDCDHWHAGAGFVTSHIAVSLMYEQSLQAINPAITLPYWDFTIEGTFYDWSNFRSSSIFSDDWFGAAAPKN 324
            AVSIMQRVPSAVGQQVYGSKYYSKDFFNR+HLYYGGR DCDHWHAGAGFVTSHIAVSLMYEQSLQAINPAI LPYWDFTIEGTF+DWSNFRSSSIFSDDWFGAAAPKN
Sbjct:  311 AVSIMQRVPSAVGQQVYGSKYYSKDFFNRIHLYYGGRADCDHWHAGAGFVTSHIAVSLMYEQSLQAINPAIALPYWDFTIEGTFFDWSNFRSSSIFSDDWFGAAAPKN 418
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BLAST of mRNA_Ecto-sp13_S_contig75270.18713.1 vs. uniprot
Match: A0A6H5K0F0_9PHAE (Tyrosinase_Cu-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F0_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 1.050e-59
Identity = 84/108 (77.78%), Postives = 100/108 (92.59%), Query Frame = 1 
Query:    1 AVSIMQRVPSAVGQQVYGSKYYSKDFFNRMHLYYGGREDCDHWHAGAGFVTSHIAVSLMYEQSLQAINPAITLPYWDFTIEGTFYDWSNFRSSSIFSDDWFGAAAPKN 324
            AVS++QRVPSAVG+ +YG KYYSKDFFNRMHLYYGG  DCDHWHAGAGFVT+H+A++LMYEQ+LQA+NP+I LPYWD TIEGT+YDW++FR+SS+FSDDWFG AAP N
Sbjct:   95 AVSVLQRVPSAVGRALYGDKYYSKDFFNRMHLYYGGARDCDHWHAGAGFVTAHVAITLMYEQALQAVNPSIALPYWDVTIEGTYYDWNDFRTSSVFSDDWFGDAAPGN 202
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BLAST of mRNA_Ecto-sp13_S_contig75270.18713.1 vs. uniprot
Match: D8LAY9_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY9_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 2.320e-57
Identity = 85/108 (78.70%), Postives = 100/108 (92.59%), Query Frame = 1 
Query:    1 AVSIMQRVPSAVGQQVYGSKYYSKDFFNRMHLYYGGREDCDHWHAGAGFVTSHIAVSLMYEQSLQAINPAITLPYWDFTIEGTFYDWSNFRSSSIFSDDWFGAAAPKN 324
            AV+++QRVPSAVG+ VYG KYYSKD+FNRMHLYYGG  DCDHWHAGAGFVTSHIA++LMYEQ+LQA+NP+I LPYWD TIEGT+YDW++FR+SS+FSDDWFG AAP N
Sbjct:  225 AVAVLQRVPSAVGRAVYGDKYYSKDYFNRMHLYYGGARDCDHWHAGAGFVTSHIAITLMYEQALQAVNPSIALPYWDVTIEGTYYDWNDFRTSSVFSDDWFGDAAPGN 332
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BLAST of mRNA_Ecto-sp13_S_contig75270.18713.1 vs. uniprot
Match: A0A6H5JTC5_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC5_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 1.550e-55
Identity = 83/108 (76.85%), Postives = 98/108 (90.74%), Query Frame = 1 
Query:    1 AVSIMQRVPSAVGQQVYGSKYYSKDFFNRMHLYYGGREDCDHWHAGAGFVTSHIAVSLMYEQSLQAINPAITLPYWDFTIEGTFYDWSNFRSSSIFSDDWFGAAAPKN 324
            AVS++QRVPSAVG+ VYG KYYSKD+FNRMHLYYGG  DCDHWH GAGFVT+HIA++LMYEQ+LQA+NP+I LPYWD TIEGT+YDW++F +SS+FSDDWFG AAP N
Sbjct:  296 AVSVLQRVPSAVGRAVYGDKYYSKDYFNRMHLYYGGARDCDHWHEGAGFVTAHIAITLMYEQTLQAVNPSIALPYWDMTIEGTYYDWNDFHTSSVFSDDWFGDAAPGN 403
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BLAST of mRNA_Ecto-sp13_S_contig75270.18713.1 vs. uniprot
Match: D7FSN5_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN5_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 2.090e-55
Identity = 80/108 (74.07%), Postives = 100/108 (92.59%), Query Frame = 1 
Query:    1 AVSIMQRVPSAVGQQVYGSKYYSKDFFNRMHLYYGGREDCDHWHAGAGFVTSHIAVSLMYEQSLQAINPAITLPYWDFTIEGTFYDWSNFRSSSIFSDDWFGAAAPKN 324
            AVS++QRVPSAVG+++YG KYYSKD+FNR+HL+YGG +DCDHWH GAGFVTSHIA+SLMYEQ+LQ+++P+I LPYWDFTIEG  YDW +FR+SS+FSDDWFG A+P+N
Sbjct:  122 AVSVLQRVPSAVGREIYGDKYYSKDYFNRLHLFYGGHKDCDHWHDGAGFVTSHIALSLMYEQALQSVSPSIALPYWDFTIEGMLYDWRDFRTSSVFSDDWFGKASPRN 229
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BLAST of mRNA_Ecto-sp13_S_contig75270.18713.1 vs. uniprot
Match: A0A6H5L614_9PHAE (Tyrosinase_Cu-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L614_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 6.100e-52
Identity = 78/108 (72.22%), Postives = 96/108 (88.89%), Query Frame = 1 
Query:    1 AVSIMQRVPSAVGQQVYGSKYYSKDFFNRMHLYYGGREDCDHWHAGAGFVTSHIAVSLMYEQSLQAINPAITLPYWDFTIEGTFYDWSNFRSSSIFSDDWFGAAAPKN 324
            AV++MQRVPS VGQ VYGS YYSKD+  R+HLYYGG ++CDHWH GAGFVTSH+A++LM+EQSLQAINPA+T+PYWDFT+E TF+  S+FRSS +F+DDWFGAA+P N
Sbjct:  100 AVAVMQRVPSGVGQIVYGSNYYSKDYITRLHLYYGGTKNCDHWHQGAGFVTSHMALTLMFEQSLQAINPAVTVPYWDFTLESTFFGSSDFRSSGVFADDWFGAASPDN 207
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BLAST of mRNA_Ecto-sp13_S_contig75270.18713.1 vs. uniprot
Match: D7FNR4_ECTSI (Tyrosinase-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR4_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 4.580e-51
Identity = 78/108 (72.22%), Postives = 96/108 (88.89%), Query Frame = 1 
Query:    1 AVSIMQRVPSAVGQQVYGSKYYSKDFFNRMHLYYGGREDCDHWHAGAGFVTSHIAVSLMYEQSLQAINPAITLPYWDFTIEGTFYDWSNFRSSSIFSDDWFGAAAPKN 324
            A+++MQRVPS VGQ VYGS YYSKD+  R+HLYYGG +DCDHWH GAGFVTSH+A++LM+EQSLQAINPA+T+PYWDFT+E TF+  S+FRSS +F+DDWFGAA+P N
Sbjct:  211 AMAVMQRVPSGVGQIVYGSNYYSKDYLTRLHLYYGGTKDCDHWHQGAGFVTSHMALTLMFEQSLQAINPAVTVPYWDFTLESTFFGSSDFRSSGVFADDWFGAASPDN 318
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BLAST of mRNA_Ecto-sp13_S_contig75270.18713.1 vs. uniprot
Match: A0A835Z8Z2_9STRA (Tyrosinase-like protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z2_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.230e-44
Identity = 68/108 (62.96%), Postives = 91/108 (84.26%), Query Frame = 1 
Query:    1 AVSIMQRVPSAVGQQVYGSKYYSKDFFNRMHLYYGGREDCDHWHAGAGFVTSHIAVSLMYEQSLQAINPAITLPYWDFTIEGTFYDWSNFRSSSIFSDDWFGAAAPKN 324
            AVS++QRVP+ VGQ++YGS YYSKD+  RMHLY+GG  DCDHWH G GFVTSH+A +LM+E++LQA+NP++++PYWDFT+E TFY+ + +R S +FS DWFG A+P N
Sbjct:  192 AVSVLQRVPTRVGQRLYGSDYYSKDYLVRMHLYFGGTADCDHWHQGPGFVTSHMAYTLMFEKALQAVNPSVSVPYWDFTLESTFYEPATWRDSPVFSGDWFGEASPDN 299
[Close]
BLAST of mRNA_Ecto-sp13_S_contig75270.18713.1 vs. uniprot
Match: A0A6H5JFW1_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFW1_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 5.940e-44
Identity = 68/109 (62.39%), Postives = 91/109 (83.49%), Query Frame = 1 
Query:    1 AVSIMQRVPSAVGQQVYGSKYYSKDFFNRMHLYYGGREDCDHWHAGAGFVTSHIAVSLMYEQSLQAINPAITLPYWDFTIEGTFY-DWSNFRSSSIFSDDWFGAAAPKN 324
            A+S++QRVPSAVG+++YG KYYS D+F R+HLY GG + CDHWH G GF+ +H+  +LM+EQ+LQA+NP+I +PYWDFTIEGT + D ++FRSSS+FSDDWFG   P+N
Sbjct:   68 AMSVLQRVPSAVGREIYGDKYYSMDYFTRLHLYGGGDKTCDHWHEGTGFINAHMGFTLMFEQALQAVNPSIAVPYWDFTIEGTPHGDSTSFRSSSVFSDDWFGTTTPEN 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75270.18713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1K2_ECTSI1.190e-6897.22Hypothetical tyrosinase-like protein F21C3.2 in ch... [more]
A0A6H5KKI9_9PHAE2.420e-6696.30TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5K0F0_9PHAE1.050e-5977.78Tyrosinase_Cu-bd domain-containing protein n=1 Tax... [more]
D8LAY9_ECTSI2.320e-5778.70Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A6H5JTC5_9PHAE1.550e-5576.85TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FSN5_ECTSI2.090e-5574.07Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A6H5L614_9PHAE6.100e-5272.22Tyrosinase_Cu-bd domain-containing protein n=1 Tax... [more]
D7FNR4_ECTSI4.580e-5172.22Tyrosinase-like protein 2 n=1 Tax=Ectocarpus silic... [more]
A0A835Z8Z2_9STRA1.230e-4462.96Tyrosinase-like protein 2 n=1 Tax=Tribonema minus ... [more]
A0A6H5JFW1_9PHAE5.940e-4462.39TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75270contigEcto-sp13_S_contig75270:1..633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score177.2
Seed ortholog evalue4e-42
Seed eggNOG ortholog2880.D7FNR4
Model size324
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Common central domain of tyrosinase
EggNOG OGs2CZRH@1,2SBDH@2759
Cds size312
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464021.3253734-UTR-Ecto-sp13_S_contig75270:0..121681464021.3253734-UTR-Ecto-sp13_S_contig75270:0..12Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig75270 1..12 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464021.339634-CDS-Ecto-sp13_S_contig75270:12..1031681464021.339634-CDS-Ecto-sp13_S_contig75270:12..103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75270 13..103 +
1681464021.3491673-CDS-Ecto-sp13_S_contig75270:412..6331681464021.3491673-CDS-Ecto-sp13_S_contig75270:412..633Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75270 413..633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75270.18713.1prot_Ecto-sp13_S_contig75270.18713.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75270 13..633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75270.18713.1

>prot_Ecto-sp13_S_contig75270.18713.1 ID=prot_Ecto-sp13_S_contig75270.18713.1|Name=mRNA_Ecto-sp13_S_contig75270.18713.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MQRVPSAVGQQVYGSKYYSKDFFNRMHLYYGGREDCDHWHAGAGFVTSHI
AVSLMYEQSLQAINPAITLPYWDFTIEGTFYDWSNFRSSSIFSDDWFGAA
APKN
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mRNA from alignment at Ecto-sp13_S_contig75270:1..633+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75270.18713.1 ID=mRNA_Ecto-sp13_S_contig75270.18713.1|Name=mRNA_Ecto-sp13_S_contig75270.18713.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75270:1..633+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGTCCATCATGCAGCGCGTGCCCAGCGCGGTGGGCCAGCAGGTGTA
CGGGAGCAAGTATTACAGCAAGGACTTCTTCAACCGGATGCACCTCTACT
ACGGTACGTGTGTGATGCTCGTTCTGACCGCGTGGCGTAGTCGTTGGACC
ACTGACGAAGACATACCTGCAATGCCGGGACGGAGCGATTATCGCGGCCC
AGGCTACGGTACGACTCCCACGGACCATCCAGAAGCACGCCATCATCCCT
GGGTTGGCTACTTGCTTGTTCTCTCTCTCTTCTGTCTCTCTCCCCCTCTC
TCCCACCCTCTCTCTGCCTCTGCGTCTCCTCCTGATCCGCTCCTTGCTCT
CCCAAGGGTCCCTCCCCGGCCTGACGATCTTTCTCTCGTTGTTCTCGTTG
TTCATGATGCAGGCGGGCGCGAAGACTGCGACCACTGGCACGCTGGGGCC
GGGTTCGTCACCTCCCACATCGCCGTGTCCCTCATGTACGAGCAGTCGCT
ACAGGCGATCAACCCCGCAATCACGCTCCCCTACTGGGACTTCACCATTG
AAGGCACGTTCTACGACTGGAGCAACTTCAGGTCGAGCTCCATCTTTTCG
GACGACTGGTTCGGTGCCGCCGCCCCTAAAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75270:1..633+

>mRNA_Ecto-sp13_S_contig75270.18713.1 ID=mRNA_Ecto-sp13_S_contig75270.18713.1|Name=mRNA_Ecto-sp13_S_contig75270.18713.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75270:1..633+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCGCGTGCCCAGCGCGGTGGGCCAGCAGGTGTACGGGAGCAAGTA
TTACAGCAAGGACTTCTTCAACCGGATGCACCTCTACTACGGCGGGCGCG
AAGACTGCGACCACTGGCACGCTGGGGCCGGGTTCGTCACCTCCCACATC
GCCGTGTCCCTCATGTACGAGCAGTCGCTACAGGCGATCAACCCCGCAAT
CACGCTCCCCTACTGGGACTTCACCATTGAAGGCACGTTCTACGACTGGA
GCAACTTCAGGTCGAGCTCCATCTTTTCGGACGACTGGTTCGGTGCCGCC
GCCCCTAAAAAC
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