mRNA_Ecto-sp13_S_contig7527.18712.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7527.18712.1
Unique NamemRNA_Ecto-sp13_S_contig7527.18712.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7527.18712.1 vs. uniprot
Match: A0A6H5K0I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I9_9PHAE)

HSP 1 Score: 504 bits (1299), Expect = 1.800e-173
Identity = 365/458 (79.69%), Postives = 371/458 (81.00%), Query Frame = 1 
Query:  181 MASNKIDIHEAAGDGNLAEVRAFLKAGGIIDKRDSDRWTPLMLSVREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------AEGKTPGDVVGSDLSEDSREIVLALLKEHAARVKNTKQRRGSCPAIPRTMMATAVHAAGTGTINGASVPAAAPLLLSSPTAPSHKPGTLLPLPSVVVTNKNAGEIDAETAVGGANSNQAGGQATRHVSFSVADRIRDHSPMGKNQGRCAEISSAAALAIATAEETSVSPEMPLXXXXXXXXXXAMSAPGQTPGRSSEPSKRVPTTDGATTMADTAGGIGSTAVGQYKGCRDNKNDSEVFALRQALKAAEERARASENSLSQIEERRLSEEARAQRLEERVAELEKVLSEQSRERQDA 1470
            MASNKIDIHEAAGDGNLAEVRAFLKAGGI+DKRDSDRWTPLMLSVREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                     AEGKTPGDVVGSDLSEDSREI L LLKEHAARVKNTKQRRGSCPAIPRTMMAT VHAAGTGTINGASVPAAAPLLLSSPTAPSHKPGTLLPLPSVVVTNKNAGEIDAETAV GANSNQAGGQATRH+SFS ADRIRDHS  GKN+GR AEISSAAAL  A AEET VSPE PL          A SAPGQTPGR+S+P KRVP T GATT ADTAGGIGSTA GQ  GCRDNKNDSEVFALRQALKAAEERARASENSLSQIEERRL EEARAQRL ERVAELEKVLSE+S ERQDA
Sbjct:    1 MASNKIDIHEAAGDGNLAEVRAFLKAGGIVDKRDSDRWTPLMLSVREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWATSFNANSADIMAFEILMGLWRGEKQVRSFRYGYTAVVELLLKRGADANFKDAEGKTPGDVVGSDLSEDSREIALTLLKEHAARVKNTKQRRGSCPAIPRTMMATVVHAAGTGTINGASVPAAAPLLLSSPTAPSHKPGTLLPLPSVVVTNKNAGEIDAETAVDGANSNQAGGQATRHISFSAADRIRDHSSTGKNEGRYAEISSAAALVTAAAEETGVSPETPLTTSEVGSPSRATSAPGQTPGRASDPKKRVPITGGATTTADTAGGIGSTAEGQDNGCRDNKNDSEVFALRQALKAAEERARASENSLSQIEERRLREEARAQRLXERVAELEKVLSERSTERQDA 458
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BLAST of mRNA_Ecto-sp13_S_contig7527.18712.1 vs. uniprot
Match: D7FNY5_ECTSI (Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY5_ECTSI)

HSP 1 Score: 489 bits (1258), Expect = 1.000e-167
Identity = 375/427 (87.82%), Postives = 383/427 (89.70%), Query Frame = 1 
Query:  181 MASNKIDIHEAAGDGNLAEVRAFLKAGGIIDKRDSDRWTPLMLSVREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGKTPGDVVGSDLSEDSREIVLALLKEHAARVKNTKQRRGSCPAIPRTMMATAVHAAGTGTINGASVPAAAPLLLSSPTAPSHKPGTLLPLPSVVVTNKNAGEIDAETAVGGANSNQAGGQATRHVSFSVADRIRDHSPMGKNQGRCAEISSAAALAIATAEETSVSPEMPLXXXXXXXXXXAMSAPGQTPGRSSEPSKRVPTTDGATTMADTAGGIGSTAVGQYKGCRDNKNDSEVFALRQALKAAEERARASENSLSQIEERRLSEEARAQRLEERVAELEKVLSEQSRER 1461
            MASNKIDIHEAA DGNLAEVRAFLKAGGIIDKRD DRWTPLMLSV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGKTPGDVVGSDLSEDSREIV  LLKEHAARVKNTKQRRGSCPAIPRT+MATAVHA GTGT+NGASV AAAPLLLSSPTAPSHKPG LLPLPSVVVTNKNAGEIDAETAV GANSNQAGGQATR +SFS ADRIRDHSPMGKNQGRCAEISSAAA A ATAEETSVSP  PL          A S PGQTPGR+S+P   VPTT GATTM DTAGG+GSTA  Q KGCRDNKNDSEVFALRQALKAAEER RASENSLSQ+EERRL EEARAQ     VAELEK+LSEQ RER
Sbjct:    1 MASNKIDIHEAARDGNLAEVRAFLKAGGIIDKRDPDRWTPLMLSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGKTPGDVVGSDLSEDSREIVRTLLKEHAARVKNTKQRRGSCPAIPRTLMATAVHATGTGTMNGASVAAAAPLLLSSPTAPSHKPGALLPLPSVVVTNKNAGEIDAETAVHGANSNQAGGQATRRISFSAADRIRDHSPMGKNQGRCAEISSAAAPATATAEETSVSPVTPLTTSVVGSPSRATSTPGQTPGRASDPKNCVPTTGGATTMTDTAGGVGSTAEDQDKGCRDNKNDSEVFALRQALKAAEERGRASENSLSQLEERRLREEARAQXXXXXVAELEKMLSEQPRER 427
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7527.18712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0I9_9PHAE1.800e-17379.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNY5_ECTSI1.000e-16787.82Chain A, Crystal Structure Of A Designed Full Cons... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7527contigEcto-sp13_S_contig7527:2369..5797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score496.1
Seed ortholog evalue1.9e-137
Seed eggNOG ortholog2880.D7FNY5
Model size1475
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.nerve growth factor signaling pathway
EggNOG OGsCOG0666@1,KOG0502@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-10_004810.1
Cds size1473
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464021.2406263-CDS-Ecto-sp13_S_contig7527:2368..28831681464021.2406263-CDS-Ecto-sp13_S_contig7527:2368..2883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7527 2369..2883 +
1681464021.2540886-CDS-Ecto-sp13_S_contig7527:4429..49011681464021.2540886-CDS-Ecto-sp13_S_contig7527:4429..4901Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7527 4430..4901 +
1681464021.2762733-CDS-Ecto-sp13_S_contig7527:5311..57971681464021.2762733-CDS-Ecto-sp13_S_contig7527:5311..5797Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7527 5312..5797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7527.18712.1prot_Ecto-sp13_S_contig7527.18712.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7527 2369..5797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7527.18712.1

>prot_Ecto-sp13_S_contig7527.18712.1 ID=prot_Ecto-sp13_S_contig7527.18712.1|Name=mRNA_Ecto-sp13_S_contig7527.18712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=491bp
TRHLLAICSAASNTYSSSRCGDQDKREKLTSRVFCVATPNQHFVARSTRN
NRTHDAVPPSMASNKIDIHEAAGDGNLAEVRAFLKAGGIIDKRDSDRWTP
LMLSVREGHLEVARQLLRSGAALEAKDGDKWTAMHVAAANGHPQCCQLLL
DRGGNPRAVDENRRTPLHWAARYGYAAVVELLLKRGEDANFKDAEGKTPG
DVVGSDLSEDSREIVLALLKEHAARVKNTKQRRGSCPAIPRTMMATAVHA
AGTGTINGASVPAAAPLLLSSPTAPSHKPGTLLPLPSVVVTNKNAGEIDA
ETAVGGANSNQAGGQATRHVSFSVADRIRDHSPMGKNQGRCAEISSAAAL
AIATAEETSVSPEMPLATSEVGSPSPAMSAPGQTPGRSSEPSKRVPTTDG
ATTMADTAGGIGSTAVGQYKGCRDNKNDSEVFALRQALKAAEERARASEN
SLSQIEERRLSEEARAQRLEERVAELEKVLSEQSRERQDA*
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mRNA from alignment at Ecto-sp13_S_contig7527:2369..5797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7527.18712.1 ID=mRNA_Ecto-sp13_S_contig7527.18712.1|Name=mRNA_Ecto-sp13_S_contig7527.18712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7527:2369..5797+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACGACACCTCTTGGCGATTTGTTCCGCCGCCTCTAATACATACAGCAG
CAGCAGATGCGGGGACCAGGATAAGCGGGAAAAACTCACATCTCGTGTCT
TCTGTGTGGCAACGCCCAATCAACATTTTGTTGCGCGAAGCACTCGAAAC
AATCGAACACACGACGCAGTGCCACCGAGCATGGCCAGCAACAAGATCGA
TATACACGAAGCTGCAGGAGATGGAAACCTGGCCGAGGTAAGAGCCTTCC
TGAAAGCCGGGGGCATCATAGACAAGAGAGATTCCGATCGATGGACCCCG
CTAATGCTGTCGGTCAGAGAGGGACACCTTGAGGTGGCTAGACAGCTGCT
CAGAAGTGGGGCGGCGCTGGAGGCGAAAGACGGGGATAAGTGGACTGCGA
TGCACGTCGCTGCTGCTAACGGCCATCCGCAGTGCTGCCAGCTGTTGCTG
GACCGAGGGGGAAACCCAAGGGCCGTCGACGAGAACAGGCGCACGCCGCT
TCATTGGGCTGCAAGGTATTCCCGCCGAGCCAGGACCGCTCTGATGTATA
TGTTGCACCCGTCCGTAGTTGGCTGTCGTTGTTATTTGCTACACCCTAAC
GAGGCGAAGTTACATGAATCGATGTTTGTAATTTTGAAATGCAGCAGCCA
CCGCATGCTCGTAAGAAGAGCTGCAATTGTAGTCGTACGGCAGTATCAAC
TCCAGCAACCTCCGTCCCATTTCGAAAGTGCAAGGAAGCGACCGCAGAAC
GAAGGTTGGAGGAGGTGCGGGTGTGCGTATACATGTAGCATCCAGCAGAT
TTTTCGGTTGGTTAACTGAAAGCAGCGACACAGCAGAGCCGCTGACTGAG
TACAATCTACTGAAGATATGAACCAGATAGTAGTCTAGGCGAAATGCATC
GTATGGATGAGGTGATCGTCTCGGAGTCATTGGGTCTTACACCTATTGAT
AGTTGCCCCCACCCCATCCTTTCTCGAGTCCTTACCGGCAACAGTCGCAG
TGTAGGCGACGATAGCTTCAACCGCATCTCTAGTTCCCCCCAGTGTTAAT
CTGTTCCCAACGCCTCCTCCGGGGCCCATACATTCGTCATCATCCTGGAT
TCAGTCATGGAATATCTCTCATTGTCTCCTGCGCCCGTTCCGTCCCCATG
AGAATTTGGCGCACGTTGCACAATAAAGTTTGATCACTAGGTTAACGGCG
GCAGAAACAAGACTCTGGCAGTGATTGTGCAGCGTCTTCGCTATGTAGCT
CCAGGTTGTTGATCTCTCCGTCGCTGGATTCATTCAACTGAAGGCTTTTC
CGGCCCTTTCTTCGAATAAGCACCTTACAAGACTCTTATTAGAACGCCAA
AGCGAAAGGATATCCTGGTCTCGCATTCTGCGTTCCATTCGCCTTGTTTC
ATGTGTACGACATTGTTGTGGTGTGCGACATGCACACTCTTACACCGTCT
TACCGGAATAGATTTCTCAAGTCCTCAACTATCAACGATGTCGCCCTTGG
TGTACCTTAAGTACGTGTTGTCTTTACAAAACGGAGATTCCATCGGGATA
CGTAAGAGTCGGGGTAGGGAGGGAAACAAGTTTGCGTCTCGAAATTCAAC
TTGGAATCGTACGTTGTTCTTCCCAGCAGCTTAAACTCCGATAGTGCCGA
TATGATGGCATTCGAGATCCTTGTGGGTCTACGGAGGGGAGAAACGGGTG
AGGATAGTTACATCGAATAACGTGTACTTCTACAGACCTTGACACGTGCT
AGCGTGCGGACTACGTCTGGCGCTGAATTTCAGAGCACGCTACAAGCCGT
GGAACGCACTCGGATGCAAGGGTTTCAATCGCCAGACTAGGTCGCTAAGA
TATGGCCGGTCGAGTCGGCGCCCTTCTTTCCTGTCTGTTTGTCTAGCCGC
ACTCATCGATGCCCCCTCCCCCCTCAGTGAACGGTCAGGTTCGGTCGTTG
AGGTAACAATCGGCTGATATGATTGTATGTCAGACTTCGAGGAACGTGCG
AGAGCCGGCATTAGCTATATCTTGCAATCCTCCACCCCCTACTCGACACG
GGTCTGCGCAGATACGGCTACGCTGCAGTCGTGGAGCTGCTCCTCAAGCG
AGGGGAAGACGCCAACTTCAAGGATGCTGAAGGAAAGACGCCGGGCGACG
TGGTAGGAAGCGACTTGAGCGAGGACTCTCGAGAGATCGTGCTCGCCCTG
CTCAAAGAGCACGCAGCCAGAGTGAAGAACACCAAGCAGCGCCGAGGGTC
GTGCCCAGCAATACCCCGAACGATGATGGCAACGGCTGTACATGCCGCCG
GCACCGGAACGATAAACGGCGCGTCGGTCCCGGCAGCGGCACCACTACTG
CTGTCATCGCCAACAGCCCCCTCACACAAACCTGGTACCCTTCTCCCACT
GCCTTCCGTCGTGGTAACAAACAAAAACGCTGGAGAGATCGATGCCGAAA
CAGCCGTCGGTGGGGCAAATAGCAACCAGGCGGGGGGCCAGGCAACCAGG
CACGTTTCCTTCAGCGTGGCTGATCGCATTCGGGTGCGTGCACCTCACTT
GCTTCGTCTACGCTAAAGGCATATCATCTTTCGTGCAGCTTCATCTTCCC
AGAATGCCCCGCTGATGTCCAGAGAGAAAGGCGTACCACTCCGTACGCCC
AGATGCTGTCGACCGGGCGTTGCCCACTGGTTGTCTTGAGCAGCGGGAAA
TACGGTCGAATATGTTTGTCTGATGCTGCTCCTCCGGGAGGTCGAGATAC
AGCTGTTGCCACGGTCCTGCATGCTTACTTCTGCGCAAGAAACATTCTTC
CTGTCGAGCACTCATTGTATTGGACGGGAGGGGGGCCATCTGGGTTGTGG
CATTCATATGTTACTGTTGTCGGAGTTGGCACGTGTTAACGGTGACTATT
ACCCACTGGTGGTTCCCGGCCCCTCGAAAACGCCGTGCAACAGGACCACT
CGCCAATGGGGAAAAACCAAGGGCGATGTGCTGAAATTTCGTCGGCTGCT
GCTCTTGCTATAGCCACTGCTGAGGAAACCAGTGTTTCCCCAGAAATGCC
TCTGGCCACAAGTGAAGTAGGGTCACCGTCGCCGGCAATGTCTGCTCCGG
GCCAGACGCCGGGACGATCCTCGGAGCCAAGTAAACGTGTTCCTACCACG
GATGGTGCCACCACAATGGCAGACACCGCCGGGGGTATTGGGTCTACAGC
AGTGGGCCAATACAAAGGGTGCAGGGATAACAAGAATGATAGCGAGGTCT
TCGCGCTTAGGCAGGCACTGAAAGCTGCGGAAGAGCGAGCACGAGCATCG
GAGAATTCCCTGTCTCAAATCGAAGAGAGGAGGCTCAGCGAAGAGGCAAG
GGCGCAGCGCTTGGAAGAGCGCGTCGCCGAGCTGGAGAAGGTGTTGTCAG
AACAGTCGAGAGAGCGGCAGGACGCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7527:2369..5797+

>mRNA_Ecto-sp13_S_contig7527.18712.1 ID=mRNA_Ecto-sp13_S_contig7527.18712.1|Name=mRNA_Ecto-sp13_S_contig7527.18712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1473bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7527:2369..5797+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACGACACCTCTTGGCGATTTGTTCCGCCGCCTCTAATACATACAGCAG
CAGCAGATGCGGGGACCAGGATAAGCGGGAAAAACTCACATCTCGTGTCT
TCTGTGTGGCAACGCCCAATCAACATTTTGTTGCGCGAAGCACTCGAAAC
AATCGAACACACGACGCAGTGCCACCGAGCATGGCCAGCAACAAGATCGA
TATACACGAAGCTGCAGGAGATGGAAACCTGGCCGAGGTAAGAGCCTTCC
TGAAAGCCGGGGGCATCATAGACAAGAGAGATTCCGATCGATGGACCCCG
CTAATGCTGTCGGTCAGAGAGGGACACCTTGAGGTGGCTAGACAGCTGCT
CAGAAGTGGGGCGGCGCTGGAGGCGAAAGACGGGGATAAGTGGACTGCGA
TGCACGTCGCTGCTGCTAACGGCCATCCGCAGTGCTGCCAGCTGTTGCTG
GACCGAGGGGGAAACCCAAGGGCCGTCGACGAGAACAGGCGCACGCCGCT
TCATTGGGCTGCAAGATACGGCTACGCTGCAGTCGTGGAGCTGCTCCTCA
AGCGAGGGGAAGACGCCAACTTCAAGGATGCTGAAGGAAAGACGCCGGGC
GACGTGGTAGGAAGCGACTTGAGCGAGGACTCTCGAGAGATCGTGCTCGC
CCTGCTCAAAGAGCACGCAGCCAGAGTGAAGAACACCAAGCAGCGCCGAG
GGTCGTGCCCAGCAATACCCCGAACGATGATGGCAACGGCTGTACATGCC
GCCGGCACCGGAACGATAAACGGCGCGTCGGTCCCGGCAGCGGCACCACT
ACTGCTGTCATCGCCAACAGCCCCCTCACACAAACCTGGTACCCTTCTCC
CACTGCCTTCCGTCGTGGTAACAAACAAAAACGCTGGAGAGATCGATGCC
GAAACAGCCGTCGGTGGGGCAAATAGCAACCAGGCGGGGGGCCAGGCAAC
CAGGCACGTTTCCTTCAGCGTGGCTGATCGCATTCGGGACCACTCGCCAA
TGGGGAAAAACCAAGGGCGATGTGCTGAAATTTCGTCGGCTGCTGCTCTT
GCTATAGCCACTGCTGAGGAAACCAGTGTTTCCCCAGAAATGCCTCTGGC
CACAAGTGAAGTAGGGTCACCGTCGCCGGCAATGTCTGCTCCGGGCCAGA
CGCCGGGACGATCCTCGGAGCCAAGTAAACGTGTTCCTACCACGGATGGT
GCCACCACAATGGCAGACACCGCCGGGGGTATTGGGTCTACAGCAGTGGG
CCAATACAAAGGGTGCAGGGATAACAAGAATGATAGCGAGGTCTTCGCGC
TTAGGCAGGCACTGAAAGCTGCGGAAGAGCGAGCACGAGCATCGGAGAAT
TCCCTGTCTCAAATCGAAGAGAGGAGGCTCAGCGAAGAGGCAAGGGCGCA
GCGCTTGGAAGAGCGCGTCGCCGAGCTGGAGAAGGTGTTGTCAGAACAGT
CGAGAGAGCGGCAGGACGCTTGA
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