prot_Ecto-sp13_S_contig7524.18710.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7524.18710.1
Unique Nameprot_Ecto-sp13_S_contig7524.18710.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length230
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7524.18710.1 vs. uniprot
Match: A0A8J4PVZ4_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PVZ4_9MYCE)

HSP 1 Score: 57.0 bits (136), Expect = 8.930e-6
Identity = 27/76 (35.53%), Postives = 41/76 (53.95%), Query Frame = 0 
Query:    1 PRESTAAAVACFRDKMGQDRTRSESKPRCDICGTHSFTESILSCHRCITVQHTFCLPNPLVDLPDRRWLCPACSES 76
            P  S++++  C +D          S  +C++C +    ESI+ C  C    H FCLPNPL+++PD  W C AC E+
Sbjct:  751 PLSSSSSSWTCSKDCFLM------SCVKCEVCSSKDKVESIVLCTTCSKGYHIFCLPNPLLEVPDYDWDCEACQET 820
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7524.18710.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J4PVZ4_9MYCE8.930e-635.53Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 28..74
e-value: 1.5E-8
score: 44.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 13..97
e-value: 3.8E-14
score: 54.0
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 28..75
e-value: 2.2E-8
score: 33.9
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 26..76
score: 8.849
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 29..73
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 20..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7524contigEcto-sp13_S_contig7524:606..3339 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7524.18710.1mRNA_Ecto-sp13_S_contig7524.18710.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7524 606..3339 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7524.18710.1 ID=prot_Ecto-sp13_S_contig7524.18710.1|Name=mRNA_Ecto-sp13_S_contig7524.18710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp
PRESTAAAVACFRDKMGQDRTRSESKPRCDICGTHSFTESILSCHRCITV
QHTFCLPNPLVDLPDRRWLCPACSESSRRQYRSRSRRQSNGSIGRAGKKT
HSGFPAANGAAEVDVNASSSRKASKGDGAAVVLLANGNTADGPAAVPSGK
GGRKFSTAATTVGEMEAAISSDATPGLSNGLPSSVEEQESSDPGSTVTLF
CRRDFRRYLRWKQRELASQDDERRKDEQTR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD