mRNA_Ecto-sp13_S_contig7524.18710.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7524.18710.1
Unique NamemRNA_Ecto-sp13_S_contig7524.18710.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7524.18710.1 vs. uniprot
Match: A0A8J4PVZ4_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PVZ4_9MYCE)

HSP 1 Score: 57.0 bits (136), Expect = 8.930e-6
Identity = 27/76 (35.53%), Postives = 41/76 (53.95%), Query Frame = 1 
Query:    1 PRESTAAAVACFRDKMGQDRTRSESKPRCDICGTHSFTESILSCHRCITVQHTFCLPNPLVDLPDRRWLCPACSES 228
            P  S++++  C +D          S  +C++C +    ESI+ C  C    H FCLPNPL+++PD  W C AC E+
Sbjct:  751 PLSSSSSSWTCSKDCFLM------SCVKCEVCSSKDKVESIVLCTTCSKGYHIFCLPNPLLEVPDYDWDCEACQET 820
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7524.18710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J4PVZ4_9MYCE8.930e-635.53Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7524contigEcto-sp13_S_contig7524:606..3339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size692
Hectar predicted targeting categoryother localisation
Exons4
Cds size690
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464021.0651426-CDS-Ecto-sp13_S_contig7524:605..7331681464021.0651426-CDS-Ecto-sp13_S_contig7524:605..733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7524 606..733 -
1681464021.0767467-CDS-Ecto-sp13_S_contig7524:1019..13801681464021.0767467-CDS-Ecto-sp13_S_contig7524:1019..1380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7524 1020..1380 -
1681464021.0875962-CDS-Ecto-sp13_S_contig7524:2234..23571681464021.0875962-CDS-Ecto-sp13_S_contig7524:2234..2357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7524 2235..2357 -
1681464021.09784-CDS-Ecto-sp13_S_contig7524:3261..33391681464021.09784-CDS-Ecto-sp13_S_contig7524:3261..3339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7524 3262..3339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7524.18710.1prot_Ecto-sp13_S_contig7524.18710.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7524 606..3339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7524.18710.1

>prot_Ecto-sp13_S_contig7524.18710.1 ID=prot_Ecto-sp13_S_contig7524.18710.1|Name=mRNA_Ecto-sp13_S_contig7524.18710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp
PRESTAAAVACFRDKMGQDRTRSESKPRCDICGTHSFTESILSCHRCITV
QHTFCLPNPLVDLPDRRWLCPACSESSRRQYRSRSRRQSNGSIGRAGKKT
HSGFPAANGAAEVDVNASSSRKASKGDGAAVVLLANGNTADGPAAVPSGK
GGRKFSTAATTVGEMEAAISSDATPGLSNGLPSSVEEQESSDPGSTVTLF
CRRDFRRYLRWKQRELASQDDERRKDEQTR
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mRNA from alignment at Ecto-sp13_S_contig7524:606..3339-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7524.18710.1 ID=mRNA_Ecto-sp13_S_contig7524.18710.1|Name=mRNA_Ecto-sp13_S_contig7524.18710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2734bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7524:606..3339- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTAGGGAAAGTACAGCAGCAGCAGTGGCGTGCTTTCGGGACAAAATGGG
CCAGGATAGGACGCGTTCTGAATCGAAGGTGTGATGGTGGATTGGAATCA
GGCGTAGGTGAACCGAGAGCTGCATTGGTTGGATTCTTCCCCTTCCCAAA
AGCAAGGTGTTAAGGTAAAGACCAACGCTATGTATGTACCTGCTGGCCGT
GGTAGCGTGTGGTATGTACGAGCCAATGGGATTAGCGATTAGGGACAGGT
GTGGTTCTGAAGGATGGGTGATGCAACCCGACGCCGCTGCTTTTCTCCTT
CAATCACGTAGTGGGTTGCTCGGCTGTGTTGCCGGTGTGGTCCAAGAGTC
TCTTCAGCAGTTCCATCCATGAGGGACGGTGGGTAATGATTCCGTCGAGA
GAGTACACGCGCATGTTGTCCTGCTTTCAAATCTCGGCATGTCAAGGCCA
AGCTACCGCGGTATTGCCCTTCTATCTGCATCTACTCACAAACTACTGGG
CAGGTGGCAAGGGCGAGAGGAATGCCAGACCCTTGTCGCGATGAAGTGGA
AGGCACCGAAGTACCACATTTTTGCCCCGGATATCGGATATCAGGGTAAT
CGAATCCAGCCTGAAGTATGGCTTTTATTCAACATTGAGCCGTTAGGAGA
GAGCCAAGACCATTGCTTGCTTACGGTAGGAAGAGATTCCCCCTAGAGAC
TGTGACACACGCAATGGTTGAACCAAAAAACAGAACAGAACCAAGCACGC
ACCCCTCAACCATAGACTGCGACTTCTAACGGCAGTATGTTCCGCTTTGC
CATATGTGTAGGTACCTTAGAGGTCGTAGATAATGACGAAGACGACACCC
ATACCATCCCCATCGTCACCAACAGACAGCAGAACCAACAACAACGGGAG
GATCCTTTCGATTAACGAACTCCTGGCCGGGCGATGCAATAAATGCCCTT
TCGATTTGCTGTTCGCCACGCCGACCCAGCAGCCGAGGTGCGACATCTGT
GGCACGCACAGCTTCACCGAGAGCATCTTGTCGTGCCACCGATGCATCAC
GGTGCAGCACACCTTCTGTTTGCCCAACCCTTTGGTGGACCTGCCTGATC
GACGGGTAAGGGGGTGGCGCGCGATGTGGGGATGGTGCTTGGGGCGCACA
ACGTGAATGTGTGCACCAGCGGTGTGGAAAGAGGTACCATATCTATCGCC
GGGTAGCTAGTGGCGGGCGAAGCAGCGCACATGATCCGATGTTGCGCGCG
CTCTTGTGGCGGGTAGCGCTATGGGCGTCATTTGTACGCATGGTTGACGC
AAACAGACGGGGGGCGAGGCGCGAGAGAAAGCACGACGCCGGACAACGCG
AATGTTGTGCATGGTTGGTTGCCGCCGTGCACAACGGTTGTAGGACTTGC
CCGTTGCCACACCCCTGCATTGTTGAACCCGTCTTGAGCGGCTCTTCGTT
GCGGTGTCTTGGGTGCCAGCCTTGCATGCGTACGTCGGAGTTCACGTGCA
CACAGCAAGACAGAGGTCTGGCACTAACTAAACGTAGCAGTTCAGCAGCA
GCGGGAGGCAGTGAATGTGCCTCAGAGCACGCAGGGCACAGGAGCGTAAG
GACGGTAGCTTGTCTCTTTTGCTGCTGGTCAACTGTGGTTCTCGCCTCTC
GGCGTACTTTGAACGCGCATGGTGCACTGTGAAGCAAGTCAGAAAGCTTG
CCTTTGATGTGGACGAAGATCCTGAGTTGCTGCGGTATGTTCGTAGCACA
AATGTCACGTGCTGCAACTTTCGTTGTTCCTGTGCAAGGTTTCTGTTCCC
GTCCTCATCAGCCACGGCAGCTTGACGGGTATGACTAATTTCGGGGATTG
TCGCCAGCAAGGCCGTTTGCTGCTCGTGCTGCACGGCACTACATACCCCG
CCTCACCCACCCGCTCCCCATGCCTGTCGCTCTGCTCGACACACGCCCCA
TGACACCAGTGGTTGTGCCCGGCCTGCAGCGAGAGCTCGCGTCGCCAGTA
CCGGTCGAGAAGCCGAAGACAATCCAACGGCTCGATAGGCCGGGCCGGGA
AAAAGACGCATTCGGGTTTTCCAGCGGCGAACGGAGCGGCCGAAGTCGAC
GTAAACGCCTCGAGCTCAAGGAAAGCCTCCAAGGGAGACGGTGCTGCTGT
TGTTCTTCTTGCAAACGGTAACACGGCGGACGGACCTGCTGCGGTTCCTA
GCGGGAAAGGAGGGAGGAAGTTTTCCACTGCTGCGACGACGGTGGGGGAA
ATGGAAGCCGCGATCTCGTCTGATGCGACGCCAGGGCTGAGCAACGGGCT
TCCATCTTCGGTGGAGGAACGTGAGGTTTTCTGGTGTGCGGTTTCTTGGT
GTAGCTCTTTCTTGCCCACAGACCTAGCATGCCGTGCCGTGTCAGATCAG
AGCTAGCAATCTTCACTACCAAAGAGAGCACGGCAACAAAGAAAGCAAAG
CAGCAACAAGCTGCTGTTCAAAGAGGAATAATCAACACGTGAGTCTTCAT
CGGGGTCTTCAAGGATTGACTCGCGTGCATACCTCACAGCGCGACAAAAA
CGCCGGCTTCTGATTTTTTTTTTGTGCATTTTTTTTTCTTACTCTCGAAA
TAACAGAAGAATCATCGGACCCGGGGAGCACGGTGACGCTCTTCTGCCGG
AGAGACTTTCGGCGGTACTTGCGGTGGAAACAACGGGAGCTGGCAAGCCA
AGACGACGAGAGGAGAAAAGACGAACAGACCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7524:606..3339-

>mRNA_Ecto-sp13_S_contig7524.18710.1 ID=mRNA_Ecto-sp13_S_contig7524.18710.1|Name=mRNA_Ecto-sp13_S_contig7524.18710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7524:606..3339- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTAGGGAAAGTACAGCAGCAGCAGTGGCGTGCTTTCGGGACAAAATGGG
CCAGGATAGGACGCGTTCTGAATCGAAGCCGAGGTGCGACATCTGTGGCA
CGCACAGCTTCACCGAGAGCATCTTGTCGTGCCACCGATGCATCACGGTG
CAGCACACCTTCTGTTTGCCCAACCCTTTGGTGGACCTGCCTGATCGACG
GTGGTTGTGCCCGGCCTGCAGCGAGAGCTCGCGTCGCCAGTACCGGTCGA
GAAGCCGAAGACAATCCAACGGCTCGATAGGCCGGGCCGGGAAAAAGACG
CATTCGGGTTTTCCAGCGGCGAACGGAGCGGCCGAAGTCGACGTAAACGC
CTCGAGCTCAAGGAAAGCCTCCAAGGGAGACGGTGCTGCTGTTGTTCTTC
TTGCAAACGGTAACACGGCGGACGGACCTGCTGCGGTTCCTAGCGGGAAA
GGAGGGAGGAAGTTTTCCACTGCTGCGACGACGGTGGGGGAAATGGAAGC
CGCGATCTCGTCTGATGCGACGCCAGGGCTGAGCAACGGGCTTCCATCTT
CGGTGGAGGAACAAGAATCATCGGACCCGGGGAGCACGGTGACGCTCTTC
TGCCGGAGAGACTTTCGGCGGTACTTGCGGTGGAAACAACGGGAGCTGGC
AAGCCAAGACGACGAGAGGAGAAAAGACGAACAGACCAGG
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