mRNA_Ecto-sp13_S_contig7521.18708.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7521.18708.1
Unique NamemRNA_Ecto-sp13_S_contig7521.18708.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7521.18708.1 vs. uniprot
Match: D7G462_ECTSI (Nicolin 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G462_ECTSI)

HSP 1 Score: 391 bits (1005), Expect = 8.440e-137
Identity = 188/199 (94.47%), Postives = 194/199 (97.49%), Query Frame = 1 
Query:  142 MESSATTALRGASPYPIPAFIGPLVRSRQTTPCPTYFEVSFLESKLPRKPARRLDAIVFRNFYCSHITIKQRRQRFDTARAADCGKDGDPWLTILQDRPLMEDPHHEDDAQYWHVVRSEEFDPEEFDAESTAPISRIYLYQSSPMWKTFGLHHVKAVSWSRAGSSKGGRDDEREADGNLGDLCRGISEQVEIFGDKHRG 738
            MESSAT A+RGA+PYPIPAFIGPLVRSRQTTPCPTYFEVSFLESKLPRKPARRLDAIVF+NFYCSHITIKQRRQRFDTA AADCGKDGDPWLTIL+DRPLMEDPHHEDDAQYWHVVRSEEFDPEE+DAESTAPI RIYLYQSSPMWKTFGLHHVKAV WSRAGSS GGRDDEREADGNLGDLCRGISEQV+IFGDKHRG
Sbjct:    1 MESSATAAVRGANPYPIPAFIGPLVRSRQTTPCPTYFEVSFLESKLPRKPARRLDAIVFKNFYCSHITIKQRRQRFDTATAADCGKDGDPWLTILRDRPLMEDPHHEDDAQYWHVVRSEEFDPEEYDAESTAPI-RIYLYQSSPMWKTFGLHHVKAVGWSRAGSSNGGRDDEREADGNLGDLCRGISEQVKIFGDKHRG 198
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7521.18708.1 vs. uniprot
Match: A0A6G0XAT5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAT5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.570e-9
Identity = 41/116 (35.34%), Postives = 56/116 (48.28%), Query Frame = 1 
Query:  283 RKPARRLDAIVFRNFYCSHITIKQR-RQRFDTARAADCGKDGDPWLTILQDRPLMEDPHHEDDAQYWHVVRSEEFDPEEFDAESTAPISRIYLYQSSPMWKTFGLHHVKAVSWSRA 627
            R P   L  I F+N+Y + + I Q    R D                IL+ R LM+D HHEDDAQ WH+++ EE     FD+ S   +   YL Q SP+W+ + L  +K    S A
Sbjct:   41 RSPPSNLSHITFQNYYVASLRIDQVINGRSDV---------------ILEKRSLMDDAHHEDDAQNWHIIKREELGSH-FDSTSVEKLI-FYLTQPSPLWEKWELRTLKVFETSEA 139
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7521.18708.1 vs. uniprot
Match: A0A6A5BXG1_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BXG1_NAEFO)

HSP 1 Score: 60.5 bits (145), Expect = 9.520e-8
Identity = 40/129 (31.01%), Postives = 66/129 (51.16%), Query Frame = 1 
Query:  211 LVRSRQTTPCPTYFEVSFLESKLPRKPARRLDAIVFRNFYCSHITIKQRRQRFDTARAADCGKDGDPWLTILQDRPLMEDPHHEDDAQ-YWHVVRSEEFDPEEFDAESTAPISRIYLYQSSPMWKTFGL 594
            +V+ +   PC  Y ++ F       KP + +  I+FRN+YCSHITIK + Q                ++T+L    LME+ ++E+D+Q Y  +   ++F+   +  +      R Y YQ+SP WK+F L
Sbjct:   14 IVKEQSKRPCLIYQDIKF------EKPTQ-IAFIIFRNYYCSHITIKYKAQN-------------GTFITLLSKYQLMENANYENDSQNYVRINCGKDFNSN-YKKDMQFNNLRFYYYQTSPNWKSFCL 121
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7521.18708.1 vs. uniprot
Match: A0A2P1N6T8_NAEFO (GS28 n=2 Tax=Naegleria fowleri TaxID=5763 RepID=A0A2P1N6T8_NAEFO)

HSP 1 Score: 60.5 bits (145), Expect = 5.800e-7
Identity = 40/129 (31.01%), Postives = 66/129 (51.16%), Query Frame = 1 
Query:  211 LVRSRQTTPCPTYFEVSFLESKLPRKPARRLDAIVFRNFYCSHITIKQRRQRFDTARAADCGKDGDPWLTILQDRPLMEDPHHEDDAQ-YWHVVRSEEFDPEEFDAESTAPISRIYLYQSSPMWKTFGL 594
            +V+ +   PC  Y ++ F       KP + +  I+FRN+YCSHITIK + Q                ++T+L    LME+ ++E+D+Q Y  +   ++F+   +  +      R Y YQ+SP WK+F L
Sbjct:   14 IVKEQSKRPCLIYQDIKF------EKPTQ-IAFIIFRNYYCSHITIKYKAQN-------------GTFITLLSKYQLMENANYENDSQNYVRINCGKDFNSN-YKKDMQFNNLRFYYYQTSPNWKSFCL 121
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7521.18708.1 vs. uniprot
Match: W4GYG4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYG4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.980e-7
Identity = 41/123 (33.33%), Postives = 57/123 (46.34%), Query Frame = 1 
Query:  238 CPTYFEVSFLESKLPRKPARRLDAIVFRNFYCSHITIKQRRQRFDTARAADCGKDGDPWLTILQDRPLMEDPHHEDDAQYWHVVRSEEFDPEEFDAESTAPISRIYLYQSSPMWKTFGLHHVK 606
            CP    V  +E      PA     + F+N+Y + + I Q  Q          GK     +TIL   PLM+D HHE DAQ WH+++ +EF      A +   I   YL Q SP+W  + L  +K
Sbjct:   32 CPPGDHVRCIEVTFKAPPAN-FSHVTFQNYYAATLRIDQVVQ----------GK----CVTILNRFPLMQDAHHEGDAQNWHIIKRDEFGAMLDVARAERFI--FYLLQPSPLWDKWELRSIK 137
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7521.18708.1 vs. uniprot
Match: A0A6A5AC89_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AC89_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.720e-5
Identity = 27/66 (40.91%), Postives = 36/66 (54.55%), Query Frame = 1 
Query:  415 LTILQDRPLMEDPHHEDDAQYWHVVRSEEFDPEEFDAESTAPISRI--YLYQSSPMWKTFGLHHVK 606
            +TIL   PLM+D HHE DAQ WH+++ +EF          A   R   YL Q SP+W  + L  +K
Sbjct:    1 MTILNRFPLMQDAHHEGDAQNWHIIKRDEFGA----MLDVAGAERFIFYLLQPSPLWDKWELRSIK 62
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7521.18708.1 vs. uniprot
Match: A0A024UMP9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UMP9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.820e-5
Identity = 39/123 (31.71%), Postives = 58/123 (47.15%), Query Frame = 1 
Query:  238 CPTYFEVSFLESKLPRKPARRLDAIVFRNFYCSHITIKQRRQRFDTARAADCGKDGDPWLTILQDRPLMEDPHHEDDAQYWHVVRSEEFDPEEFDAESTAPISRIYLYQSSPMWKTFGLHHVK 606
            CP    V  +E    + P      + F+N+Y + + I Q  Q         C       +TIL    LM++ HHEDDAQ WH+++ EEF      A++   I   YL Q SP+W+ + L  +K
Sbjct:   32 CPPGDHVRCIEVTF-KAPPIYFSHLSFQNYYAAMLRIDQVVQ-------GRC-------VTILDRFRLMQNAHHEDDAQNWHIIKREEFGAPLDVAKAEHFI--FYLLQPSPLWEKWELRSIK 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7521.18708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G462_ECTSI8.440e-13794.47Nicolin 1 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6G0XAT5_9STRA6.570e-935.34Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A5BXG1_NAEFO9.520e-831.01Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]
A0A2P1N6T8_NAEFO5.800e-731.01GS28 n=2 Tax=Naegleria fowleri TaxID=5763 RepID=A0... [more]
W4GYG4_9STRA7.980e-733.33Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A5AC89_9STRA3.720e-540.91Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024UMP9_9STRA4.820e-531.71Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7521contigEcto-sp13_S_contig7521:4452..5693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score395.2
Seed ortholog evalue1.8e-107
Seed eggNOG ortholog2880.D7G462
Model size741
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2EA9C@1,2SGHZ@2759
Ec32 ortholog descriptionnicolin 1
Ec32 orthologEc-02_001420.1
Cds size600
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464020.9223971-CDS-Ecto-sp13_S_contig7521:4451..46471681464020.9223971-CDS-Ecto-sp13_S_contig7521:4451..4647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7521 4452..4647 -
1681464020.9352412-CDS-Ecto-sp13_S_contig7521:4911..51741681464020.9352412-CDS-Ecto-sp13_S_contig7521:4911..5174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7521 4912..5174 -
1681464020.948143-CDS-Ecto-sp13_S_contig7521:5411..55521681464020.948143-CDS-Ecto-sp13_S_contig7521:5411..5552Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7521 5412..5552 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464020.9613843-UTR-Ecto-sp13_S_contig7521:5552..56931681464020.9613843-UTR-Ecto-sp13_S_contig7521:5552..5693Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7521 5553..5693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7521.18708.1prot_Ecto-sp13_S_contig7521.18708.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7521 4452..5552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7521.18708.1

>prot_Ecto-sp13_S_contig7521.18708.1 ID=prot_Ecto-sp13_S_contig7521.18708.1|Name=mRNA_Ecto-sp13_S_contig7521.18708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
MESSATTALRGASPYPIPAFIGPLVRSRQTTPCPTYFEVSFLESKLPRKP
ARRLDAIVFRNFYCSHITIKQRRQRFDTARAADCGKDGDPWLTILQDRPL
MEDPHHEDDAQYWHVVRSEEFDPEEFDAESTAPISRIYLYQSSPMWKTFG
LHHVKAVSWSRAGSSKGGRDDEREADGNLGDLCRGISEQVEIFGDKHRG*
back to top

mRNA from alignment at Ecto-sp13_S_contig7521:4452..5693-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7521.18708.1 ID=mRNA_Ecto-sp13_S_contig7521.18708.1|Name=mRNA_Ecto-sp13_S_contig7521.18708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7521:4452..5693- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTATGCACAAAGTCTACGGTTAGGCAGGGCGTTTGTTGTTCGTGTATCG
TCTTGGACCACACAATCCTTCTTTCGACGGTACATCGACAACGGTCGGAA
GGGGAGGTCTACACTTTGAATACATTCTACCATTCTACCAGATGGAATCG
AGCGCAACAACAGCTCTGAGGGGGGCAAGTCCCTATCCCATCCCAGCATT
CATAGGTCCCTTGGTGCGAAGCCGACAAACCACCCCGTGCCCAACATATT
TCGAGGTGTCATTTCTGGAGAGCAAGTTACCGGTACGTGTGTCGGTGTAG
GCTACACGTTCGTACCGAGGTCGGATCTTCGGGGTTTCCACCCGTGATGC
ATCCTCTCGGTATCTCACATCTCGGCACAATTACGTCGAAGCAAGTATTT
GTTATGTTTGCTGACCCCGGCAACCGCCATGTGGTTACAGTACATTGTAG
TCTAGAGCTTTCGAGTCCAATGTTGTTCTGCCTGCTGGAATGACAACTTT
GTCGGGTAATGTGTCGCAGAGAAAACCTGCGCGGAGGTTGGACGCCATCG
TCTTCAGGAATTTCTACTGTTCGCACATCACCATCAAGCAGCGCAGACAG
CGCTTCGACACAGCTAGAGCGGCGGACTGTGGAAAAGATGGAGACCCTTG
GCTGACGATTCTGCAAGACAGGCCTTTGATGGAAGATCCCCACCACGAGG
ACGATGCGCAATACTGGCACGTGGTGAGATCGGAGGAGTTCGATCCGGAG
GAGTTCGACGCGGAGTCGACGGCGCCTATCAGGTACCATTGGGCGTTTGA
CTTTGGGTGACACGCACGTACAGCAGTCTTGGAAGTCTACGTACAGACGT
TGAAGTGTCTTTCCAGCGTGTGCAGTCAAAGTCTATGGAAAGTCTCCGTC
TGGGGCTTGGCTTGGCGGCATGCATTCAAGTAAGGCGTTGGATGTTGTAT
AGAGTCTTCAGCGCGTTTCACCGCTGACTTCAACCTTTGGTTTTGCTGCC
CCTCTCGTGCCCTTCGTGGCGTGAATGTGTGTGCTTGCATGGTGAGCAGG
ATCTACCTTTACCAGTCGTCTCCTATGTGGAAGACCTTCGGCTTGCATCA
CGTCAAAGCCGTCAGTTGGTCGAGAGCGGGTTCAAGCAAGGGAGGAAGAG
ACGACGAGAGAGAAGCGGACGGAAATCTTGGAGACTTGTGTAGAGGCATT
AGCGAGCAAGTGGAGATATTCGGCGACAAACACAGGGGCTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7521:4452..5693-

>mRNA_Ecto-sp13_S_contig7521.18708.1 ID=mRNA_Ecto-sp13_S_contig7521.18708.1|Name=mRNA_Ecto-sp13_S_contig7521.18708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7521:4452..5693- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAATCGAGCGCAACAACAGCTCTGAGGGGGGCAAGTCCCTATCCCAT
CCCAGCATTCATAGGTCCCTTGGTGCGAAGCCGACAAACCACCCCGTGCC
CAACATATTTCGAGGTGTCATTTCTGGAGAGCAAGTTACCGAGAAAACCT
GCGCGGAGGTTGGACGCCATCGTCTTCAGGAATTTCTACTGTTCGCACAT
CACCATCAAGCAGCGCAGACAGCGCTTCGACACAGCTAGAGCGGCGGACT
GTGGAAAAGATGGAGACCCTTGGCTGACGATTCTGCAAGACAGGCCTTTG
ATGGAAGATCCCCACCACGAGGACGATGCGCAATACTGGCACGTGGTGAG
ATCGGAGGAGTTCGATCCGGAGGAGTTCGACGCGGAGTCGACGGCGCCTA
TCAGCAGGATCTACCTTTACCAGTCGTCTCCTATGTGGAAGACCTTCGGC
TTGCATCACGTCAAAGCCGTCAGTTGGTCGAGAGCGGGTTCAAGCAAGGG
AGGAAGAGACGACGAGAGAGAAGCGGACGGAAATCTTGGAGACTTGTGTA
GAGGCATTAGCGAGCAAGTGGAGATATTCGGCGACAAACACAGGGGCTAG
back to top