mRNA_Ecto-sp13_S_contig752.18705.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig752.18705.1 vs. uniprot
Match: D8LKW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW2_ECTSI) HSP 1 Score: 1905 bits (4935), Expect = 0.000e+0 Identity = 1147/1486 (77.19%), Postives = 1200/1486 (80.75%), Query Frame = 1
Query: 25 MKPKRPTRVGSRRSAASNTRHLVSASSLGQQVEALRTRADKLSVNDLREIGRQIELALPGEADLRGVGLHRTVRAVLLPLVAQPGFAKKRKGYRQHLVHALAEAAYGPVPPSALLPILRAKETGPAATDLTLEVLERITGEADKGAGGGSIRTNDTPKNAVIDLLHHVVAEVVTSGVTKGGRRGAKGPPAHLMSFLVNAFSTLPEYALVFAKDLLALTESSSSPARKMSLAILAAILEHGRELGAQCGGAILDPALAGVLRLARSDGDATVRSLAFDSVAKFFGEMETTLCRQHLDDDDDTSSDLDDGTPSGDELAHQQSRSTAETLADGDSTGGGGVGGGRGVTHGARSTETMEMEIAPREGGAADHAGDADACPLSERSPSARARTPMACTQMGAMHGAASGRQSGEGDTPVTSPQHTSGHAHRPTRGAGAASEGDRGQRRETNVSAGPWAIEGALQSSLSAAAEALLTDGSKAVRAKALACSLRILEVHGGTIQPRGAFCENTTGDEAGSAAGPGVSSRVERTLSAASSRCALAALEALAGDNIGGSTTQASLNSTGGGGRHRKAADTARALLILPCVESCPVDLVMRYARCRVTPGVGEGEAVGATEAKRALREVAQATFCVDISKLLKAVSVIMAADERRQGLEDGSANIDFADTREDATFPLSEVLCEVLAGVDSGAIASLLFDALEAYAAEDEIAPRDRDRATASAPVLLRTLALLAEASGHAKNGVDERNGARQPGENGNRERLAGRSGQHGAGDEEEQLRTLAGSQGLFWRRLERRMEDLERDGQGEET-------DRGHLRRRGLGVSVEQYHGGGXXXXXXXXXXXXXRSAAPDAVYELSELLRIFQLLATHSLLSPENSAALEALVFPAALSRRRLIRQAVGLALALEEPHRVLLSSLAILQDAAFARTSTDLRSRACDYVRLIGVLAKENASFIEAHIREQYSARYLSRRGEEESAENGEDDYMAGVSSREAMEREIRRLRESSVTSDGMLSCYTPFLLAIVRRRVADTAAARSVTAEKGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGCGGARVGNGGNAQDETRYHVAQQDGGKVEATVFRKDVGQDRRATTAAGVSLPESSCPSALCTEALWALSEYAVLSAGLAAAEVLPLAEGLASDTLEHPQVRHAAVGVLTRRELATDEIAAHACSLLEDENPSLRREVLVRLGQLMKESRIKTAHLSRFALLLVDVSERVRQAAQKVFIDHLQPRPDTVCRCLFETYFTLDAEEAVKRKVLQRLVAVAREAAPEQGLESLGGALVRKAAETGDSEAAFFLSLVPPTVNSFEAAELALRRGQLAQSPHGTTSLVATHFSRGAQRGAGSSVATTAFIAGRGRGAPLSKARALEMAAQIGSLASRGASASKSSRRAKVAAATATDATARNTIPAARPRREKKSEQAAAKQAGQGYSSGSDDDALTSVVECQRGGRYTGLRGGDKGARKKRGVSRK 4461
MKPKR TRVGSRRSAASNTRHLVS+SSLGQQVEALRTRAD LSV+DLREIGRQIELALPGEADLR VGLHRTVRAVLLPLVAQPGFAKKRKGYRQHLVHALAEAA GPVPPSALLPILRAKETGPAATDLTLE+L+RI +AD+G GGGSIR+NDT KNAVIDLLHHVVAEVVTSGVTKGGRRGAKGPPAHL+SFLVNAFSTLPEYALVFAKDLL LTESSSSPARKMSLAILA+IL HGRELGAQCGG ILDPALA VLRL+RSDGDATVRS AFDSVAKF GE+E+TL RQ LDDDDDTSSDLDDGTPSGD LAHQQ R+TAETL D DSTG G GGGRGVTHGAR+TETMEMEIAPR GAA+HAGDADACPLSE+ PSA ARTP ACTQMGAMHGA SGRQSGEGDTPVTS QHT+GHAHR TR AGAASEG+RGQRR+ VSAGPWA+ GALQSSLSAAAEALLTDGSKAVRAKALAC LRILEVHGGTI+PRGA CENTTGD+AGSAA PGVSSRVE LSA + + ALAALE LAGDN GG T QASLNSTGGGGRHRKAADTARALL+LPC+ES PVDLVM YARCRV PGVGEGEAVGATEAKRALRE+AQATFC DI KL KAVSVIMAADERRQGLEDGSANIDFADT E A+FPLSEVLCEVLAGVDSGAIASLL DALEAYAAEDEIAPRDRD A ASAPVLLRTLALLAEA+GHAKNGVDERNGARQPG + NRERLAGRSGQHGAGDEEEQLRTLAGSQGLFWRRLE+RMED+ERD +GEET DRG LRRRG+GVSVEQYHGG XXXXXXXRSAA D + ELSELLR+FQLLAT SLLSPEN AALEALVFPAALSRRR ACDYVRLIGVLA+ENASFI AHIREQYSAR LSR GEEESAENGEDDYMAGVS+REAM + TAE+G XXXXXXXXXXXXXXXXXXX DG CGGARVG+ G+AQDE +Y +AQQDGGKVEATVFR+DVGQDR AT AAGVSLP SSCP ALCTEALWALSEYAVLSAGLAAAEVLPLAE LASDTLEHPQVR+AAVGVLTRRELATDEIAAHACSLLEDENP LRREVLVRLGQL+KES RCLFETYFTLDAEEAVKRKVLQRLVAVAREAAP QGLESLG ALVRK AE GDSEAAFFLSLVPPTVNSFEAAE+A RRGQLAQSPHGT SLVA HFSRGAQRGAGSS+ATTA IAGRG GAPLSKA+ALEMAA+IGSL SR ASAS+SSRRAKVA +L SVVECQRGGRYTGLRG D GARKK G SRK
Sbjct: 1 MKPKRSTRVGSRRSAASNTRHLVSSSSLGQQVEALRTRADNLSVDDLREIGRQIELALPGEADLREVGLHRTVRAVLLPLVAQPGFAKKRKGYRQHLVHALAEAASGPVPPSALLPILRAKETGPAATDLTLEILQRIIRKADEGGGGGSIRSNDTSKNAVIDLLHHVVAEVVTSGVTKGGRRGAKGPPAHLISFLVNAFSTLPEYALVFAKDLLVLTESSSSPARKMSLAILASILGHGRELGAQCGGTILDPALAAVLRLSRSDGDATVRSSAFDSVAKFIGEVESTLYRQRLDDDDDTSSDLDDGTPSGDVLAHQQPRNTAETLTDDDSTGSG-AGGGRGVTHGARATETMEMEIAPRGDGAANHAGDADACPLSEKRPSATARTPAACTQMGAMHGATSGRQSGEGDTPVTSRQHTTGHAHRETREAGAASEGNRGQRRKAKVSAGPWAVGGALQSSLSAAAEALLTDGSKAVRAKALACLLRILEVHGGTIKPRGASCENTTGDKAGSAAAPGVSSRVETILSAVA-KGALAALEPLAGDNTGGPTIQASLNSTGGGGRHRKAADTARALLVLPCIESSPVDLVMCYARCRVAPGVGEGEAVGATEAKRALREIAQATFCADIRKLWKAVSVIMAADERRQGLEDGSANIDFADTTEGASFPLSEVLCEVLAGVDSGAIASLLCDALEAYAAEDEIAPRDRDGAAASAPVLLRTLALLAEATGHAKNGVDERNGARQPGGSSNRERLAGRSGQHGAGDEEEQLRTLAGSQGLFWRRLEQRMEDIERDKRGEETGGRGVEGDRGQLRRRGVGVSVEQYHGG-------XXXXXXXRSAASDTISELSELLRMFQLLATRSLLSPENGAALEALVFPAALSRRR-----------------------------------------ACDYVRLIGVLARENASFIAAHIREQYSARCLSRPGEEESAENGEDDYMAGVSNREAM--------------------------------------GAATTAEEGEXXXXXXXXXXXXXXXXXXXX--------DGDCGGARVGSRGDAQDEMQYRMAQQDGGKVEATVFREDVGQDRGATAAAGVSLPASSCPRALCTEALWALSEYAVLSAGLAAAEVLPLAERLASDTLEHPQVRNAAVGVLTRRELATDEIAAHACSLLEDENPCLRREVLVRLGQLIKES-----------------------------------------RCLFETYFTLDAEEAVKRKVLQRLVAVAREAAPGQGLESLGSALVRKVAEAGDSEAAFFLSLVPPTVNSFEAAEVAHRRGQLAQSPHGTISLVAAHFSRGAQRGAGSSLATTASIAGRGGGAPLSKAQALEMAARIGSLTSRVASASRSSRRAKVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLISVVECQRGGRYTGLRGSDNGARKKGGGSRK 1349
BLAST of mRNA_Ecto-sp13_S_contig752.18705.1 vs. uniprot
Match: A0A6H5L3C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C3_9PHAE) HSP 1 Score: 874 bits (2258), Expect = 1.800e-294 Identity = 558/846 (65.96%), Postives = 588/846 (69.50%), Query Frame = 1
Query: 634 PEYALVFAKDLLALTESSSSPARKMSLAILAAILEHGRELGAQCGGAILDPALAGVLRLARSDGDATVRSLAFDSVAKFFGEMETTLCRQHLDDDDDTSSDLDDGTPSGDELAHQQSRSTAETLADGDSTGGGGVGGGRGVTHGARSTETMEMEIAPREGGAADHAGDADACPLSERSPSARARTPMACTQMGAMHGAASGRQSGEGDTPVTSPQHTSGHAHRPTRGAGAASEGDRGQRRETNVSAGPWAIEGALQSSLSAAAEALLTDGSKAVRAKALACSLRILEVHGGTIQPRGAFCENTTGDEAGSAAGPGVSSRVERTLSAASSRC-------------------------------------------------------------------------------------ALAALEALAGDNIGGSTTQASLNSTGGGGRHRKAADTARALLILPCVESCPVDLVMRYARCRVTPGVGEGEAVGATEAKRALREVAQATFCVDISKLLKAVSVIMAADERRQGLEDGSANIDFADTREDATFPLSEVLCEVLAGVDSGAIASLLFDALEAYAAEDEIAPRDRDRATASAPVLLRTLALLAEASGHAKNGVDERNGARQPGENGNRERLAGRSGQHGAGDEEEQLRTLAGSQGLFWRRLERRMEDLERDGQGEET-------DRGHLRRRGLGVSVEQYHGGGXXXXXXXXXXXXXRSAAPDAVYELSELLRIFQLLATHSLLSPENSAALEALVFPAALSRRRLIRQAVGLALALEEPHRVLLSSLAILQDAAFARTSTDLRSRACDYVRLIGVLAKENASFIEAHIREQYSARYLSRRG 2895
P + +DLLALTESSSSPARKMSLA+LAAILEHGRELGAQCGG ILDPALA +LRLARSDGDATVRS AFDS+AKF G+M TTL RQ L D+DDTSSDLDDGTPSGD LAHQQSRSTAE L D RGVTHGAR+TETM+MEIAP E GAADHAGDADACPLSE+ PSA ARTPMA TQMGAMHGA SGRQS +G TPV SPQHTS AHR TRGAGA SEG+RGQRRE VSAGPW + GALQSSLSAAAEALLTDGSKAVRAKALACSL ILEVHG TIQPRGA CENT GDEAGSAAGPGVSSRVERTLS ASSRC AL ALEALAGDN GGSTTQASLNSTGGGGRHRKAADTARALLILPCVE PV+LVM YARCRV GVGEGEAVGATEAKRALRE+AQATF DI KLLKAVSVIMAADERRQGLEDGSANI+FADT E A+F LSEVL EVLAGVDSGAIASLL DALEAYAAEDEIAPRDRD T R + DEEEQLRTLAGSQGLFWRRLE+RMED+ERD + EE+ DRG LRRRGLG+S+EQYHGGG XXXXXXXXX RSAAPDAV ELSELLRIFQLLAT+SLLS +NSAALEALVFPAALSRRRLI S +I +FA SRACDYVRLIGVLA+ENASFI AH+REQY R G
Sbjct: 4 PNISTTKTQDLLALTESSSSPARKMSLAVLAAILEHGRELGAQCGGTILDPALAALLRLARSDGDATVRSSAFDSIAKFIGQMGTTLYRQRLHDNDDTSSDLDDGTPSGDVLAHQQSRSTAEALTDXXXXXXXXXXX-RGVTHGARATETMDMEIAPSERGAADHAGDADACPLSEKIPSATARTPMARTQMGAMHGATSGRQSRQGRTPVISPQHTSDRAHRATRGAGAPSEGNRGQRREAKVSAGPWTMGGALQSSLSAAAEALLTDGSKAVRAKALACSLLILEVHGDTIQPRGACCENTAGDEAGSAAGPGVSSRVERTLSTASSRCGGILILMAFLRSQRRLPRSSVDFASRPCMSGIAILCPSLRKRDLRQRCFPYTRGSFTWVHLSKSLVVQEPFLPLSTLCRVQVAKGALLALEALAGDNHGGSTTQASLNSTGGGGRHRKAADTARALLILPCVEPSPVELVMCYARCRVASGVGEGEAVGATEAKRALREIAQATFSADIRKLLKAVSVIMAADERRQGLEDGSANINFADTTEGASFSLSEVLGEVLAGVDSGAIASLLCDALEAYAAEDEIAPRDRDGET--------------------------------------------RKYSNYNSDEEEQLRTLAGSQGLFWRRLEQRMEDIERDERREESGWQGAQGDRGQLRRRGLGLSIEQYHGGGGXXXXXXXXXHGHRSAAPDAVSELSELLRIFQLLATYSLLSAKNSAALEALVFPAALSRRRLI------------------VSRSIDIHNSFAFLVLVWGSRACDYVRLIGVLARENASFIAAHVREQYRCEKERREG 786
BLAST of mRNA_Ecto-sp13_S_contig752.18705.1 vs. uniprot
Match: A0A6H5KWW9_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW9_9PHAE) HSP 1 Score: 699 bits (1803), Expect = 7.200e-231 Identity = 420/489 (85.89%), Postives = 435/489 (88.96%), Query Frame = 1
Query: 3010 MLSCYTPFLLAIVRRRVADTAAARSVTAEKGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGCGGARVGNGGNAQDETRYHVAQQDGGKVEATVFRKDVGQDRRATTAAGVSLPESSCPSALCTEALWALSEYAVLSAGLAAAEVLPLAEGLASDTLEHPQVRHAAVGVLTRRELATDEIAAHACSLLEDENPSLRREVLVRLGQLMKESRIKTAHLSRFALLLVDVSERVRQAAQKVFIDHLQPRPDTVCRCLFETYFTLDAEEAVKRKVLQRLVAVAREAAPEQGLESLGGALVRKAAETGDSEAAFFLSLVPPTVNSFEAAELALRRGQLAQSPHGTTSLVATHFSRGAQRGAGSSVATTAFIAGRGRGAPLSKARALEMAAQIGSLASRGASASKSSRRAKVAAATATDATARNTIPAARPRREKKSEQAAAKQAGQGYSSGSDDDALTSVVECQRGGRYTGLRGGDKGARKKRGVSRKDSKKR 4476
MLSCYTPFLLAIVRRRVADTAAAR+VTAEKGA XXXXXXXXXXXXXXXX DG C ARVG+GG+A DETR HV QQDGGKVEAT FRKD GQ R ATTAA VSLP SSCP ALCTEAL ALSEYAVLSAGLAAAEVLPLAEGLASDTLEHPQVR+AAVGVLTRRELATDEIAAHACSLLEDENP +RREVLVRLGQLMKESRIKT HLSRFALLLVDVSE VRQAAQKVFIDHLQPRPDTVCRCLFET+FTLDAEEAVKRKVLQRLVAVAREAAP QGLESLGGALVRKAAETGDSEAAFFLSLVPPTVNSFEAAE+ALRRGQLAQSPH T LVATHFSRGAQRGAGSS+A TA +AGRG GAPLSKA+ALEMAAQIGSLASRGASAS SRRAKVAAA AT A A NT+PAARPRR KK++QAAA Q GQGYSSGSDD +LTSVVECQRG RYTGLRG D GARK SRK SK+R
Sbjct: 1 MLSCYTPFLLAIVRRRVADTAAARNVTAEKGAATKAEXXXXXXXXXXXXXXXXASAGGAADGDCDEARVGSGGDAHDETRLHVVQQDGGKVEATDFRKDGGQGRGATTAASVSLPASSCPRALCTEALRALSEYAVLSAGLAAAEVLPLAEGLASDTLEHPQVRNAAVGVLTRRELATDEIAAHACSLLEDENPCVRREVLVRLGQLMKESRIKTGHLSRFALLLVDVSEGVRQAAQKVFIDHLQPRPDTVCRCLFETFFTLDAEEAVKRKVLQRLVAVAREAAPGQGLESLGGALVRKAAETGDSEAAFFLSLVPPTVNSFEAAEVALRRGQLAQSPHATIFLVATHFSRGAQRGAGSSLAITASVAGRGGGAPLSKAQALEMAAQIGSLASRGASASIFSRRAKVAAAIATGAAAMNTVPAARPRRGKKTDQAAATQGGQGYSSGSDDTSLTSVVECQRGDRYTGLRGFDNGARKTGVGSRKGSKRR 489 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig752.18705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig752.18705.1 >prot_Ecto-sp13_S_contig752.18705.1 ID=prot_Ecto-sp13_S_contig752.18705.1|Name=mRNA_Ecto-sp13_S_contig752.18705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1547bp MKPKRPTRVGSRRSAASNTRHLVSASSLGQQVEALRTRADKLSVNDLREIback to top mRNA from alignment at Ecto-sp13_S_contig752:5030..21493- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig752.18705.1 ID=mRNA_Ecto-sp13_S_contig752.18705.1|Name=mRNA_Ecto-sp13_S_contig752.18705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=16464bp|location=Sequence derived from alignment at Ecto-sp13_S_contig752:5030..21493- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig752:5030..21493- >mRNA_Ecto-sp13_S_contig752.18705.1 ID=mRNA_Ecto-sp13_S_contig752.18705.1|Name=mRNA_Ecto-sp13_S_contig752.18705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=4641bp|location=Sequence derived from alignment at Ecto-sp13_S_contig752:5030..21493- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |