mRNA_Ecto-sp13_S_contig7518.18704.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7518.18704.1
Unique NamemRNA_Ecto-sp13_S_contig7518.18704.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7518.18704.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 648 bits (1672), Expect = 1.590e-233
Identity = 302/320 (94.38%), Postives = 309/320 (96.56%), Query Frame = 1 
Query:    1 EPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTVRWRNLFSRRKSKPVTPETALVDMKKVFFIFTPNRQDGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHPPLWKHRPDESVDSFVLRMLPTICHFIHLRYLVLHDKLGGKTIEFTYDESLADPLQWHQRWLSSVGLTPPPSVVLQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHEIAEQLEGICREWLPPVLLEKFGIGAPP 960
            EPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCT RWR  FSRRK KPV+PETALVDMK+VFF+F PNRQ GRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHH P WKH  DESVDSFVLRMLPTICHFIHLRYLVLH+KLGGKT+EFTYDESLADPLQWHQRWLSSVGLTPPP VVLQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISH++AEQLEGICREWLPPVLLEKFGIGAPP
Sbjct:  107 EPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKFGIGAPP 426
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BLAST of mRNA_Ecto-sp13_S_contig7518.18704.1 vs. uniprot
Match: A0A6H5JP89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP89_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 4.410e-102
Identity = 141/152 (92.76%), Postives = 146/152 (96.05%), Query Frame = 1 
Query:  505 SSFFHLKTHHPPLWKHRPDESVDSFVLRMLPTICHFIHLRYLVLHDKLGGKTIEFTYDESLADPLQWHQRWLSSVGLTPPPSVVLQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHEIAEQLEGICREWLPPVLLEKFGIGAPP 960
            SSFFHLKTHH PLWK+  DESVDSFVLRMLPTICHFIHLRYLVLH+KLGGKT+EFTYDESLADPLQWHQRWLSSVGLTPPP+VVLQATNTSLRREYGF GKGVDKHPGGKEATEKRTWEDEIS E+AEQLE ICREWLPPVLLEKFGIGAPP
Sbjct:    8 SSFFHLKTHHTPLWKYWHDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPAVVLQATNTSLRREYGFVGKGVDKHPGGKEATEKRTWEDEISREVAEQLEDICREWLPPVLLEKFGIGAPP 159
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BLAST of mRNA_Ecto-sp13_S_contig7518.18704.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 1.120e-50
Identity = 91/228 (39.91%), Postives = 130/228 (57.02%), Query Frame = 1 
Query:  271 KVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHPPLWKHRPDESVDSFVLRMLPTICHFIHLRYLVLHDKLGGKTIEFTYDESLADPLQWHQRWLSSVGLTPPPSVV--LQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHEIAEQLEGICREWLPPVLLEKFGI 948
            +V I +S++ KH LPV  SCPW H      E  GC + +G  V    D   C+Q+ PC I D+R+Q + +RDPRAVAVS++FH         K  P  S+D  VL +LP +CHF  LR+++    L  +T  F Y++++ DP  WH RW S  GL  P   +  + A N         A K ++ HPGG E ++ RTW+DE+S  I  +++ I R+WLP VLL ++GI
Sbjct:    4 RVEISISTVDKHRLPVNESCPWSHGSGTVHEGDGCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFHRVHKDNNYQKLHP--SLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGMVAENQ--------AHKHLNPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLARYGI 221
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BLAST of mRNA_Ecto-sp13_S_contig7518.18704.1 vs. uniprot
Match: A0A6H5KPP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP2_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 2.080e-48
Identity = 80/91 (87.91%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    1 EPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTVRWRNLFSRRKSKPVTPETALVDMKKVFFIFTPNRQDGRSSAGGPSASPCPCSTVDK 273
            EPKSGT FMFEWAVNALMVTCEELGRLYGEGTCTVR R  FSRRK KPVTPETAL DMK+V F+  PNRQDGRSSAGGPSASPCPCSTVDK
Sbjct:  112 EPKSGTGFMFEWAVNALMVTCEELGRLYGEGTCTVRGRRPFSRRKPKPVTPETALDDMKEVIFVINPNRQDGRSSAGGPSASPCPCSTVDK 202
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BLAST of mRNA_Ecto-sp13_S_contig7518.18704.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 9.790e-36
Identity = 70/169 (41.42%), Postives = 102/169 (60.36%), Query Frame = 1 
Query:  448 IVDDRIQMLILRDPRAVAVSSFFHLKTHHPPLWKHRPD--ESVDSFVLRMLPTICHFIHLRYLVLHDKLGGKTIEFTYDESLADPLQWHQRWLSSVGLTPPPSVVLQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHEIAEQLEGICREWLPPVLLEKFGI 948
            ++DD +Q  +LRDPRAVAVS++F++K+H P  +       +S+D  VL +LP +C F  +R+L+   +L  K+  F Y++++ DPL WH RW S  G   P S +     T    +        D HPGG++ + KRTWEDEIS  I E+++ I R WLP VLLE+ GI
Sbjct:   25 LLDDSLQFAVLRDPRAVAVSTYFYVKSH-PAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDIDATLPEAQQKVKR---DPHPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLERLGI 189
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BLAST of mRNA_Ecto-sp13_S_contig7518.18704.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 5.450e-28
Identity = 62/163 (38.04%), Postives = 96/163 (58.90%), Query Frame = 1 
Query:  478 LRDPRAVAVSSFFHLKTHHPPLWKHRPD--ESVDSFVLRMLPTICHFIHLRYLVLHDKLGGKTIEFTYDESLADPLQWHQRWLSSVGLTPPPSVV--LQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHEIAEQLEGICREWLPPVLLEKFGIGA 954
            +RDPRAVAVS++F++K    P+  H P   +S+D  V+ +LP IC F  +R+++   +L  ++  F Y++++ DPL W+ RW S  G T P   +  +QA+ T    E     +  + HPGG+  +  RTWEDE+S E   ++  I R WLP VLL +F + A
Sbjct:    1 MRDPRAVAVSTYFYIK--RSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLT----EAAENDRKREPHPGGQVVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARFDVPA 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7518.18704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LJE4_ECTSI1.590e-23394.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP89_9PHAE4.410e-10292.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDV7_9PHAE1.120e-5039.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPP2_9PHAE2.080e-4887.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG38_9PHAE9.790e-3641.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2T4_ECTSI5.450e-2838.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7518contigEcto-sp13_S_contig7518:5683..7141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size963
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-06_010120.1
Cds size939
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464020.3967836-CDS-Ecto-sp13_S_contig7518:5682..63731681464020.3967836-CDS-Ecto-sp13_S_contig7518:5682..6373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7518 5683..6373 -
1681464020.4060895-CDS-Ecto-sp13_S_contig7518:6869..71171681464020.4060895-CDS-Ecto-sp13_S_contig7518:6869..7117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7518 6870..7117 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464020.4145756-UTR-Ecto-sp13_S_contig7518:7117..71411681464020.4145756-UTR-Ecto-sp13_S_contig7518:7117..7141Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7518 7118..7141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7518.18704.1prot_Ecto-sp13_S_contig7518.18704.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7518 5683..7117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7518.18704.1

>prot_Ecto-sp13_S_contig7518.18704.1 ID=prot_Ecto-sp13_S_contig7518.18704.1|Name=mRNA_Ecto-sp13_S_contig7518.18704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=313bp
MFEWAVNALMVTCEELGRLYGEGTCTVRWRNLFSRRKSKPVTPETALVDM
KKVFFIFTPNRQDGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPP
SCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQML
ILRDPRAVAVSSFFHLKTHHPPLWKHRPDESVDSFVLRMLPTICHFIHLR
YLVLHDKLGGKTIEFTYDESLADPLQWHQRWLSSVGLTPPPSVVLQATNT
SLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHEIAEQLEGICREWLPP
VLLEKFGIGAPP*
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mRNA from alignment at Ecto-sp13_S_contig7518:5683..7141-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7518.18704.1 ID=mRNA_Ecto-sp13_S_contig7518.18704.1|Name=mRNA_Ecto-sp13_S_contig7518.18704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7518:5683..7141- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCCCAAGTCGGGCACGAGCTTCATGTTCGAGTGGGCCGTGAATGCTTT
GATGGTGACTTGTGAGGAACTGGGGAGGTTGTACGGGGAGGGCACGTGCA
CCGTCAGGTGGAGAAACTTGTTCTCCCGAAGAAAGTCGAAGCCAGTTACC
CCCGAGACAGCTTTGGTCGACATGAAAAAAGTCTTCTTCATCTTTACTCC
GAATAGGCAGGACGGTCGGAGTTCTGCTGGAGGTCCCTCTGCTTCCCCTT
GTCCCTGCTCGACCGTTGACAAGTGAGGATTGCGACAGAGGGAGAGGGAG
ACAGGAGTATCTCTCTCTCTATACATAGAGAGAGAGGAACACAGATAGAG
AGAGAGAGAGAGAGAGAGAGAGAGACAGACAGAGAGACAGATAGACAGAC
AGAGAGAGGGGGGGGGGCAGAGGGAGGGAAGGAGAGAGAGAGTTTTGACT
TAGCGGGGAGTTTGATTTGGCGCTATGGGTGCTTTTATCTCTTTCGCGGC
TGGACTCATACGCCCACTGCACGATTGTATTGTCGCCAATTCCTTGGAGT
CCTCGCAGATGCAAACCTGCGTCTTTGTCACTGTAGCTGTGTCCTTTATC
TCCTCCGCTACATTTGGCTTCCTTTCCTCAACGCCGGTATCGGATCGTCA
CGAACTGTAGAATCGAGCTCAGCTGAAGGACCTGCGCCACTCCCATCACC
GCCAAACCCACCCCCTCTAACTCTTCGCCCCTGCTTCTGCACTCTGCACC
GCCTGCTGCCGCCGCTAGGGTGTCCATCATGGTGTCCAGCTTGTTCAAGC
ACGACCTGCCAGTGCCCCCAAGCTGCCCTTGGCAGCACGTGGACAACGTC
ACGCCTGAGAATAAGGGTTGCACCACCGTGAACGGCAGGAGGGTGGGGAA
CTACACGGACACGGTGGAATGCCTCCAGCAGCACCCCTGCCGTATCGTAG
ACGATCGCATCCAGATGCTGATATTGCGGGACCCCCGGGCGGTGGCTGTC
AGCTCGTTCTTCCACCTCAAGACGCACCACCCCCCCTTGTGGAAACATCG
GCCCGACGAGAGCGTGGACAGCTTCGTCTTGAGGATGCTGCCGACCATCT
GCCATTTCATTCACTTGAGATACCTGGTTCTTCACGACAAACTCGGCGGC
AAGACGATTGAGTTCACATACGACGAGAGCTTAGCAGACCCTTTACAGTG
GCACCAGCGATGGCTGTCTTCCGTAGGGCTTACTCCACCGCCGAGCGTGG
TGCTCCAGGCGACGAACACTTCGCTTAGACGAGAGTACGGGTTTGCAGGT
AAGGGGGTTGACAAGCACCCGGGCGGAAAAGAGGCCACGGAAAAACGGAC
GTGGGAGGACGAGATCAGCCATGAGATCGCGGAACAGTTAGAGGGCATTT
GTCGCGAGTGGCTTCCCCCGGTCCTGTTGGAGAAGTTCGGGATTGGTGCG
CCGCCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7518:5683..7141-

>mRNA_Ecto-sp13_S_contig7518.18704.1 ID=mRNA_Ecto-sp13_S_contig7518.18704.1|Name=mRNA_Ecto-sp13_S_contig7518.18704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=939bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7518:5683..7141- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGAGTGGGCCGTGAATGCTTTGATGGTGACTTGTGAGGAACTGGG
GAGGTTGTACGGGGAGGGCACGTGCACCGTCAGGTGGAGAAACTTGTTCT
CCCGAAGAAAGTCGAAGCCAGTTACCCCCGAGACAGCTTTGGTCGACATG
AAAAAAGTCTTCTTCATCTTTACTCCGAATAGGCAGGACGGTCGGAGTTC
TGCTGGAGGTCCCTCTGCTTCCCCTTGTCCCTGCTCGACCGTTGACAAGG
TGTCCATCATGGTGTCCAGCTTGTTCAAGCACGACCTGCCAGTGCCCCCA
AGCTGCCCTTGGCAGCACGTGGACAACGTCACGCCTGAGAATAAGGGTTG
CACCACCGTGAACGGCAGGAGGGTGGGGAACTACACGGACACGGTGGAAT
GCCTCCAGCAGCACCCCTGCCGTATCGTAGACGATCGCATCCAGATGCTG
ATATTGCGGGACCCCCGGGCGGTGGCTGTCAGCTCGTTCTTCCACCTCAA
GACGCACCACCCCCCCTTGTGGAAACATCGGCCCGACGAGAGCGTGGACA
GCTTCGTCTTGAGGATGCTGCCGACCATCTGCCATTTCATTCACTTGAGA
TACCTGGTTCTTCACGACAAACTCGGCGGCAAGACGATTGAGTTCACATA
CGACGAGAGCTTAGCAGACCCTTTACAGTGGCACCAGCGATGGCTGTCTT
CCGTAGGGCTTACTCCACCGCCGAGCGTGGTGCTCCAGGCGACGAACACT
TCGCTTAGACGAGAGTACGGGTTTGCAGGTAAGGGGGTTGACAAGCACCC
GGGCGGAAAAGAGGCCACGGAAAAACGGACGTGGGAGGACGAGATCAGCC
ATGAGATCGCGGAACAGTTAGAGGGCATTTGTCGCGAGTGGCTTCCCCCG
GTCCTGTTGGAGAAGTTCGGGATTGGTGCGCCGCCTTGA
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