mRNA_Ecto-sp13_S_contig7516.18703.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7516.18703.1
Unique NamemRNA_Ecto-sp13_S_contig7516.18703.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7516.18703.1 vs. uniprot
Match: D7FXJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ5_ECTSI)

HSP 1 Score: 510 bits (1313), Expect = 3.040e-179
Identity = 249/270 (92.22%), Postives = 258/270 (95.56%), Query Frame = 1
Query:  136 MLLACFAVVVGVHHLWSQHIGGSAFESNPPDPTGQGILFFAYGSETSTAEHYLEQVLASARRIKSLNPTTNITVVTNPGIRPGVEGVFDMVVHVEEKHLYRGKQQSWGPKGLARQWFTRLEYISRSPYEVTLALDSQALCCGTSVEEILTEGGEGFDVAFAVQGPRTLGPHNWAILYRLNDRTRRLFDRWKSLQLAYTRNGSDQLTLHMAAGSLALKGELNVGVLAQNAALATVVYNRTVEKFPKTSTLVDPRPVHFIHYDAQSHEDAEA 945
            M LACFAVV GVH  WSQH GG AFESNPPDPTGQG+LFFAYGSETSTAEHYLEQVL SARRIKSLNP+TNITVVTNPGIRP VEGVFD+VVHVEEKHLYRGKQQSWGPKGLARQWFTRLEYISRSPYEVTLALDSQALCCGTSVE+ILTEGGE FD+AFAVQGPR LGPHNWAILYRLNDRTRRLFDRWKSLQLAY R+GSDQLTLHMAAGSLALKGELNVGVLAQNAALATV+YNRTV +FPKTSTLVDPRPVHF+HYDAQSHEDAEA
Sbjct:    1 MFLACFAVV-GVHRQWSQHTGGDAFESNPPDPTGQGVLFFAYGSETSTAEHYLEQVLVSARRIKSLNPSTNITVVTNPGIRPEVEGVFDVVVHVEEKHLYRGKQQSWGPKGLARQWFTRLEYISRSPYEVTLALDSQALCCGTSVEDILTEGGEEFDIAFAVQGPRMLGPHNWAILYRLNDRTRRLFDRWKSLQLAYARSGSDQLTLHMAAGSLALKGELNVGVLAQNAALATVIYNRTVAEFPKTSTLVDPRPVHFVHYDAQSHEDAEA 269          
BLAST of mRNA_Ecto-sp13_S_contig7516.18703.1 vs. uniprot
Match: D8LTZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ7_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 5.650e-106
Identity = 163/278 (58.63%), Postives = 198/278 (71.22%), Query Frame = 1
Query:  223 PDPTGQGILFFAYGSETSTAEHYLEQVLASARRIKSLNPTTNITVVTNPGIRPGVEGVFDMVVHVEEKHLYRGKQQSWGPKGLARQWFTRLEYISRSPYEVTLALDSQALCCGTSVEEILTEGGEGFDVAFAVQGPRTLGPHNWAILYRLNDRTRRLFDRWKSLQLAYTRNGSDQLTLHMAAGSLALKGELNVGVLAQNAALATVVYNRTVEKFPKTSTLVDPRPVHFIHYDAQSHEDAEATCKKLNREADRARVVVLPRPFPRSD-TGHRLLNNYEV 1053
            P    +GILFFAYG+E +TAEHYL+Q + SARRIK LNP+TNIT+VTNPG+RP ++G FD VV+VEEK LY G  QSW P G++RQW TRLEY++RSPY                                  Q P  L PHNWAILYR N+ T+RLF+RW+ LQ+ Y+R GSDQ TL MAAGSLAL+G+LNV V+++N ALATVVYNRTV  FPKTS L+DP PVHF+HYDA S EDAE TC+KLNR    ARVVV+P PFP+S+ TG R+ +NY+V
Sbjct:   30 PPAAPEGILFFAYGAEITTAEHYLQQAITSARRIKLLNPSTNITLVTNPGMRPDIDGAFDAVVNVEEKLLYSGTVQSWNPNGVSRQWLTRLEYLARSPY----------------------------------QNPDLLAPHNWAILYRKNENTKRLFNRWRVLQIEYSRAGSDQQTLEMAAGSLALQGKLNVSVISENLALATVVYNRTVPTFPKTSMLIDPGPVHFVHYDAASDEDAEMTCRKLNRHWSLARVVVMPAPFPKSEETGLRIESNYKV 273          
BLAST of mRNA_Ecto-sp13_S_contig7516.18703.1 vs. uniprot
Match: A0A7S4KCU6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCU6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.640e-19
Identity = 64/184 (34.78%), Postives = 97/184 (52.72%), Query Frame = 1
Query:  220 PPDPTGQGILFFAYGSETSTA-EHYLEQVLASARRIKSLNPTTNITVVTNPGIRPGVEGVFDMVVHVEEKHLYRGKQQSWGPKGLARQWFTRLEYISRSPYEVTLALDSQALCCGTSVEEILTEGGE-GFDVAFAVQGPRTLGPHNWAILYRLNDRTRRLFDRWKSLQLAYTRNGSDQLTLHMA 765
            P +  G G+++ AY  +T+ A   +L +   SA ++K  NP   + ++TN    P V   FD V+ V    L+  K +S  P G+ RQWF R+ Y++ SP+++T  LDS A+   T + E   +  + G D+A A   P     HN+AIL+R N+R + +F  W   QL    N  DQ TL  A
Sbjct:  129 PREKKGYGVVYSAYSFDTTKALPQFLGEAATSAAQVKRNNPRIPVAIITNADTIPDV---FDHVIPVAPSFLF--KSESTRPDGIFRQWFARMYYLAHSPFQITWYLDSHAVVPTTKLWEAFEDFEKSGIDIATANSHPSDFSCHNFAILFRWNERVKAVFLDWILNQLNTGINLDDQGTLCQA 307          
BLAST of mRNA_Ecto-sp13_S_contig7516.18703.1 vs. uniprot
Match: A0A8J6CJX9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CJX9_DIALT)

HSP 1 Score: 87.4 bits (215), Expect = 3.740e-15
Identity = 57/174 (32.76%), Postives = 83/174 (47.70%), Query Frame = 1
Query:  232 TGQGILFFAYGSETSTAEHYLEQVLASARRIKSLNPTTNITVVTNPGIRPGVEGVFDMVVHVEEKHLYRGKQQSWGP---------KGLARQWFTRLEYISRSPYEVTLALDSQALCCGTSVEEIL-------TEGGEGFDVAFAVQGPRTLGPHNWAILYRLNDRTRRLFDRW 705
            +G G+L FAY          LE   ASARR+K+L+P   + + TN      V GVFD +V +E++H+  G   + G          + +  Q  TR+ Y++RSP+ +TLAL+  A+ C   V+  L        EG   FDVA + Q        +  +L R N  TR L   W
Sbjct:   69 SGAGVLLFAYAESAQALASRLEAATASARRMKALSPRLRVALATNG---EPVRGVFDHIVAIEQRHVLDGGDPAAGKASESSAPTFRPVESQALTRIYYLARSPFALTLALEGTAIACAGGVDAALHALLDSAAEGEGQFDVAVSTQMQTESSHASTVLLIRANAATRALLRDW 239          
BLAST of mRNA_Ecto-sp13_S_contig7516.18703.1 vs. uniprot
Match: A0A819H895_9BILA (Hypothetical protein n=4 Tax=Adineta steineri TaxID=433720 RepID=A0A819H895_9BILA)

HSP 1 Score: 66.6 bits (161), Expect = 2.460e-8
Identity = 82/324 (25.31%), Postives = 137/324 (42.28%), Query Frame = 1
Query:  232 TGQGILFFAYGSETSTAEHYLEQVLASARRIKSLNPTTNITVV-TNPGIRPGVEGVFDMVVHVEEKHLYRGKQQSWGPKGLARQWFTRLEYISRSPYEVTLALDSQALCCGTSVEEI-LTEGGEGFDVAFAVQGPRTLGPHNW----------AILYRLNDRTRRLFDRWKSL---QLAYTRNGSDQLTLHMAAGSLALKGELNVGVLAQNAALATVVYNRTVEKFPKTS---TLVDPRPVHFIHYDAQSHEDAEATCKKLNREA--DRARVVVLPRPFPRSDTGH----RLLNNYEVVYSEEGLATTVNTARKDAAYFRGLDW 1131
            +G GI++F YGS+    + YL++VL SA     + P  +I ++ T+P I    +  F  +V + ++  Y G           RQW TR+E +S +P+  TLA+DS    C    +++ L      +D AF        G HN            +L R    T+RL   W  +   Q+  ++   DQ++L +A  S A K  + + V   + +     Y    E +       T+V    V  IH  A  +      CK +N E+   R R++ + R       G     +L + +++ +S    A  +N A       R +DW
Sbjct:   41 SGFGIVYFLYGSQDQL-QKYLKEVLQSAETYWRVEPNISIALISTDPTIIHETDHHFTHIVKIPQEINYSG-----------RQWLTRIESLSLTPFMTTLAVDSDTFACTKLSDDLKLAHLSVQYDYAFT-------GYHNHYNKTILMDAGTMLMRWTPGTKRLLKEWAKVHKEQMTKSKQ-DDQVSLVLALLS-AKKRNMTLKVARLDYSYGLRWYGAKGEGWINRRFEHTMVTHGEVRTIHMRAM-YPSYRLICKIINEESLLTRPRLLTVDRKLHSDLYGKVSETQLRSGFQLAFSTNECAYQLNGAE-----CRDMDW 337          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7516.18703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FXJ5_ECTSI3.040e-17992.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTZ7_ECTSI5.650e-10658.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4KCU6_9STRA4.640e-1934.78Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A8J6CJX9_DIALT3.740e-1532.76Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A819H895_9BILA2.460e-825.31Hypothetical protein n=4 Tax=Adineta steineri TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7516contigEcto-sp13_S_contig7516:2242..7389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1341
Hectar predicted targeting categorysignal anchor
Exons9
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_001940.1
Cds size1341
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7516.18703.1prot_Ecto-sp13_S_contig7516.18703.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7516 2242..7389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464020.2978184-CDS-Ecto-sp13_S_contig7516:2241..23701681464020.2978184-CDS-Ecto-sp13_S_contig7516:2241..2370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7516 2242..2370 -
1681464020.3070173-CDS-Ecto-sp13_S_contig7516:2608..27701681464020.3070173-CDS-Ecto-sp13_S_contig7516:2608..2770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7516 2609..2770 -
1681464020.315734-CDS-Ecto-sp13_S_contig7516:2966..30721681464020.315734-CDS-Ecto-sp13_S_contig7516:2966..3072Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7516 2967..3072 -
1681464020.3242753-CDS-Ecto-sp13_S_contig7516:3685..38821681464020.3242753-CDS-Ecto-sp13_S_contig7516:3685..3882Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7516 3686..3882 -
1681464020.332827-CDS-Ecto-sp13_S_contig7516:4762..48851681464020.332827-CDS-Ecto-sp13_S_contig7516:4762..4885Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7516 4763..4885 -
1681464020.343878-CDS-Ecto-sp13_S_contig7516:5359..54611681464020.343878-CDS-Ecto-sp13_S_contig7516:5359..5461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7516 5360..5461 -
1681464020.3525925-CDS-Ecto-sp13_S_contig7516:6035..61521681464020.3525925-CDS-Ecto-sp13_S_contig7516:6035..6152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7516 6036..6152 -
1681464020.3637612-CDS-Ecto-sp13_S_contig7516:6455..66201681464020.3637612-CDS-Ecto-sp13_S_contig7516:6455..6620Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7516 6456..6620 -
1681464020.372091-CDS-Ecto-sp13_S_contig7516:7149..73891681464020.372091-CDS-Ecto-sp13_S_contig7516:7149..7389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7516 7150..7389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7516.18703.1

>prot_Ecto-sp13_S_contig7516.18703.1 ID=prot_Ecto-sp13_S_contig7516.18703.1|Name=mRNA_Ecto-sp13_S_contig7516.18703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=447bp
TIDSEVGQRRPKRKPSSSPSPSPSSRASGNPLSPRRLKLQHKALLMLLAC
FAVVVGVHHLWSQHIGGSAFESNPPDPTGQGILFFAYGSETSTAEHYLEQ
VLASARRIKSLNPTTNITVVTNPGIRPGVEGVFDMVVHVEEKHLYRGKQQ
SWGPKGLARQWFTRLEYISRSPYEVTLALDSQALCCGTSVEEILTEGGEG
FDVAFAVQGPRTLGPHNWAILYRLNDRTRRLFDRWKSLQLAYTRNGSDQL
TLHMAAGSLALKGELNVGVLAQNAALATVVYNRTVEKFPKTSTLVDPRPV
HFIHYDAQSHEDAEATCKKLNREADRARVVVLPRPFPRSDTGHRLLNNYE
VVYSEEGLATTVNTARKDAAYFRGLDWTNDFGKWGHVATPWRDHYPNCWR
DLVNDVNEGLRHIYDRNPRNILRDTHFPEEFGGDHLEWLEGETNTR*
back to top

mRNA from alignment at Ecto-sp13_S_contig7516:2242..7389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7516.18703.1 ID=mRNA_Ecto-sp13_S_contig7516.18703.1|Name=mRNA_Ecto-sp13_S_contig7516.18703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5148bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7516:2242..7389- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTATTGACAGCGAAGTTGGCCAACGGAGGCCCAAGCGAAAGCCGTCATC ATCACCGTCACCATCGCCATCATCGCGAGCGAGTGGCAACCCGTTGTCAC CACGACGGCTCAAGCTTCAACACAAAGCCTTGTTGATGCTCTTGGCGTGT TTTGCAGTGGTGGTGGGAGTGCACCATCTGTGGTCCCAGCACATCGGAGG CAGCGCCTTCGAGAGCAACCCTCCCGACCCCACTGGCCAGGTCAGTCTCT CACAAACAGCATGTGTTTTCGGTACTCCCAGAACCCGTCCACTCTGTACG CGGCAGATGGCTTTGTTGAGAAGAATCCCACCATTCGGGGTTTAAGATTG TTGCAGATTCTTTCATATTGCAAACCATAGACATGTTGTATCATTCGAGC GCTCGTGCGGGTTCGGGCAGCAGTAGTAGCCATCAACTTCCGCTGGCTCT GGTCCTGAAAATTGACAACGGGGCGCCGAAGCGATCCAACCATCCTGTGA AATCTCAGGGAAACGCTTCCTGCTGGGCTAGCTAGAGGAACCGATCATTT ACGCCAATGTACGCAGCGAACAAGAACATAGAAGTACAATTTTGTTCCAA TACTCAAGTTCGCCCAAACGTCGTCTGTACGGTTCGCACTATTCTTTCCA CATGGACTCAAAGACGATACGAACCCTAATCACAGACAAGGGAGAATTCC CGAATCATACTGAAGTTTACCTTGACAAGGTTGGCTCTCGCTTCATCTCC TGACATGTTCGAATTGTAGGGAATTTTGTTCTTCGCTTACGGTTCGGAGA CAAGCACGGCGGAGCACTACTTAGAACAGGTGCTCGCATCAGCCCGGCGC ATCAAGTCGCTCAACCCAACCACCAACATCACGGTCGTCACGAATCCAGG AATCCGTCCTGGAGTGGAGGGAGTATTCGACATGGTAAGGATGAAGGTAT TAGCAACCCTTCACCTCGAAGACGTGCCTCGACACACGGAAACCGCAATC CACCTATCGCTGAACAGGCACATGATTGTGTTTCAGCACGAACAAGTGAT AGCCAACACACGGCGCCGAGTTCTCTCCGCCCTCCTATCCCAAAAAGCCT ACCAACCAAACAAGTGGTACTTCTGGACAAGGACGCAAAGTGACAAGATT TGAAACTCCTCCTGTCGCGACAGCCCTGCCCACGAAAGTAGGTTGAAGCG AACCTCGCAGCGTTTCGCTGCATCTCGTTTTGATCAGGTCGTTCACGTAG AGGAGAAACACCTCTATCGAGGAAAACAACAATCCTGGGGGCCCAAGGGC CTCGCCAGGCAATGGTTTACGCGCCTCGAGTACATTTCTCGCTCTCCGTA TGAGGTGAGTTGGGTCAACTGATGCCCTGCTACTATGGCCGACGAACAGG GGGCAAGGGGAGCGAGAGAGAGAGAGAGCGTAGGCGAAATGAGTCGGCGG TGCGATTTCGCTTGTTGAGAAGACTTGTTGTACCCTGTCTCTGCAACGTG TCGATCGGGGGTCGTCACAGCTAAAGTTTGGCGGGAACTACGATGAGTTG TTCGTCTCGGACGTTGGAAGCGTCGAGCATCCAGCATGGTCCCTGTATGG GTGGACAGTATGGTAGTCCTGCCAGGGAATGATGTACTTTGGCTGCACGG CATCAACAACAATACGTCTGACGCACCCCCAAGCAGACTACCATGAAACG TTGGTACTACTTGTACTGTTCGTTCAAGCATGGTGAAGAAGCCAATCTTC CTTAGTCCAACTCCGTTGAAGGGTGCAAAGATGTCGGGCTGCGGCTAACA CGTTGATGGGGATGATCGATGCCGGGCACGGACTCAAGCACAGTCCAAGC CTCATGATGATTCGGCACAGAGGTTTTTTGGGCCAGAATAACCACTTTCT CTGATGTATTTCTCACATTTTCTCGCAGGTTACGCTAGCGTTAGACTCCC AGGCCCTTTGTTGTGGCACAAGCGTGGAGGAAATCCTCACGGAAGGCGGG GAGGGGTTCGACGTTGCTTTCGCTGTGCAGGTAAATTAGGCATAGAACCT CATATTAAACGGTTATGCTGAAACGTAAACGAGGATATGGTTGACTCTAT CAATGAGACTCAACTGCGGGTTACAAACAATGTTGCGTATTTCCTTGCCA TCCCTCCGTTCCGCGTCATGTATCTGCAGAAGCTTCGACATTGTACGTAG TTTTGGGGGGTCTCATCATCATATACAAAAACTGCCAAGGTTGTAGGCGG CAACCAAGTATTTGTACCACTTGGGAGGCAATGAACGGCCGCGATGCCCA ACCATCCTCTTTGTCAGGTCTGTGGATGGTTCCTTTTCGCAACCTACGCA CCACACTTGTGCACTGGTCTGACATGCAGTGCACTGGTGCACTGCTTTGC GACATTGCTCTCGATGTGGCTGCTGTGCATTTGTTGAATTGCCTATCTCC GTTCGGTAACCGACAACACACGTCGTTCGCTTGGACCCGACGCTACTGAT TCAGGGCCCCAGAACGCTAGGGCCGCACAACTGGGCAATTTTGTACCGCC TCAACGACAGGACTCGCCGCCTTTTTGACCGCTGGAAAAGCCTGCAGCTG GCATATACCCGAAATGGTTCGGACCAGGTCTGCAGCAGCGTTTTTTGACG ACATGTTTCAGTCTCACCACAATGGCTGGGTCTTGACTGTCAATGTCACA ATACCCTCGTAAACCTTCTAGCTCAAGGCTGCCGATCAAGTCTCACTGTA GAGAAATCCTCGCAATTTGTGCGCACTGGAAAGTGCACGTCGTGAGTACG CCCAACAACGAGGCAAGGCGCTGCTGGACCCTTCTCGCGTATTATATTGA AGGCATGGATTGATCCCCAGAATGCGTCGGGAGGGCGTACAAAAAACTTG GAACACCATGTTGTGAGTAGCATAGTTCCGGAATACTGAACACCTAGTGA GCGCACAGGACGAGAATGCATGTTTCACGCAAGCACTTTGTCAACCACGA CGTACGCGTGGGACGAGATTGTTGCTGTGATTGCACGTCTCTGCTAAAGC ACTACAGTAGAAATTCACCGTTCTCTACGGTTTCGGTGGGCCAAGGCGTT TGTTGAGGCAACGATTGTCGTCTTTGTCTTGAAGCCACAGCTAATGGGTG GTCGAGTGGGAACTCCCAACTTTTTCCTCCCGTTTGAAGCGTTCTTTGAA TTGGATGCTCGCCGCACTTGGTCTGTTGACTCTCTTGCGTACGCATTTCA CGACTTGCGTATGACTTTCCGTAGTTTTTCTCTACAGTACCTGTGTTGCG TTCGGCGGACTGCCAGTACTAACATCGAATCATGCCCGCAAAGAAAAACG CCCGACGCCACGGTTTGTCACTCGTGCTACGAAGAAGTGTACTTGTCACC AGGAAATTCCACTTTAAAAATCGCCCCAATGTATAGACTATAGTCTTACC GTAATCCTGTTCATCTTGCACGAATTCTTCAATTCAAACACCGGTTCCGC GACACAGTTGACGCTCCACATGGCGGCGGGGTCCCTGGCTCTCAAAGGCG AGCTCAACGTTGGCGTTCTTGCACAGAACGCCGCGCTCGCGACCGTGGTC TACAACCGCACGGTCGAGAAATTTCCCAAGACTTCCACCCTCGTCGACCC ACGGCCGGTTCATTTCATCCACTACGACGCACAATCTCATGAAGACGCCG AAGCGTAAGCATAAATGCCGCTTTTCTCTATTGTGGTTTCTGTTCGGTGT TGTCAGGATGGATGCTTGCGCCATTGGCTGCATTAAAAATTGTCAAGAAC TGTCGGATTTCCCGTAGCGTCAAGTGCACGCCAAGTACGTCAAAATCTCG CTCCTGTCGCAGGCCCAGAAGGAATTGTTGGCTGTTCTCGCCACGGCCTT GCTTCTCTAAGTGCACATGTGAGGGTGCTCACTTGTTTAGTTCATGCAAA CCACACACTGCTTTCCTTGACTGCACAACGCCAAGGTTGCGAGACATGGG GTCTTCGCTCTGCCCTCCGCTGACATCTTCTTTCTCGTAGTTACCCTTTA CACAGCACATGCGGTTTGAGAAAGAGCATCGATTGTCACACCACACGCAC GCAGTAGTGGTCAATGCAAGTTCATTGCCGTCTTCGTCCTGCGTAAAGTG GGGTTCTTTACGTTGACCACTTCTTGCACCTGATGTCGCGTCTATTCCCT CCCGAGTACCGCTTGTGCTTCGAATTTGGGTCCACGCAAGCAAAAACGCA ACCAATCTCCAACAAGATATCCATGTTCCGCAAGAGATCCGCGCCCCCCG GACGTGCTCACAAACAGGACATGCAAGAAATTGAACAGAGAGGCGGACCG TGCGCGAGTTGTGGTCCTTCCACGACCATTCCCAAGGTCGGACACCGGGC ACCGCCTCCTGAACAACTACGAGGTAACAGAAGGTTGTTGCAGAGACAAC GCACCACGGGAAAAAAAAGTGAAAAGCCAAGAGTCTTGGCTCTACGATAT TATTGAAACTGTTCGTACCTCCTCTCGTCTCTAGCTTGTGTCAGTTCAAC CCCATTCCAAGCTGCTGCTCTTCTCGCTGTTCTTGAATAACTTTGAAATC GCATGCGCAACATCACAAGGTGGTGTACAGCGAGGAAGGACTAGCGACAA CGGTAAACACGGCCAGGAAAGATGCTGCCTACTTTCGCGGGCTGGACTGG ACAAACGACTTTGGAAAATGGGGACACGTGGCGACCCCATGGCGAGACCA CTACCCGAACTGCTGGCGAGATCTCGTCAACGTGAGCAGCTGTTTCGAAG CAGTCCCAAAAGGGGAGATACTCGCACTCGTATACACAAAAATAGAGATG TCGGAGGTGTGCTGCATGCATATGCGTGCAGACTTGTCCACGGTGCTGTG CCTGGTATTGTATCTTAAACCATGGTGACCGATATGTGTGTCTATCCGAC GACAGACATTGATTTTCGCCTTACACCACTGTTCTGTTTCTCTCGGCGAA TACGACTACGCAAACGCAGGACGTGAACGAAGGACTCCGGCACATATACG ATCGCAACCCGAGGAACATCTTGCGTGATACGCACTTCCCTGAAGAGTTT GGTGGTGACCATTTGGAATGGCTTGAGGGTGAAACAAACACCCGTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7516:2242..7389-

>mRNA_Ecto-sp13_S_contig7516.18703.1 ID=mRNA_Ecto-sp13_S_contig7516.18703.1|Name=mRNA_Ecto-sp13_S_contig7516.18703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1341bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7516:2242..7389- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTATTGACAGCGAAGTTGGCCAACGGAGGCCCAAGCGAAAGCCGTCATC
ATCACCGTCACCATCGCCATCATCGCGAGCGAGTGGCAACCCGTTGTCAC
CACGACGGCTCAAGCTTCAACACAAAGCCTTGTTGATGCTCTTGGCGTGT
TTTGCAGTGGTGGTGGGAGTGCACCATCTGTGGTCCCAGCACATCGGAGG
CAGCGCCTTCGAGAGCAACCCTCCCGACCCCACTGGCCAGGGAATTTTGT
TCTTCGCTTACGGTTCGGAGACAAGCACGGCGGAGCACTACTTAGAACAG
GTGCTCGCATCAGCCCGGCGCATCAAGTCGCTCAACCCAACCACCAACAT
CACGGTCGTCACGAATCCAGGAATCCGTCCTGGAGTGGAGGGAGTATTCG
ACATGGTCGTTCACGTAGAGGAGAAACACCTCTATCGAGGAAAACAACAA
TCCTGGGGGCCCAAGGGCCTCGCCAGGCAATGGTTTACGCGCCTCGAGTA
CATTTCTCGCTCTCCGTATGAGGTTACGCTAGCGTTAGACTCCCAGGCCC
TTTGTTGTGGCACAAGCGTGGAGGAAATCCTCACGGAAGGCGGGGAGGGG
TTCGACGTTGCTTTCGCTGTGCAGGGCCCCAGAACGCTAGGGCCGCACAA
CTGGGCAATTTTGTACCGCCTCAACGACAGGACTCGCCGCCTTTTTGACC
GCTGGAAAAGCCTGCAGCTGGCATATACCCGAAATGGTTCGGACCAGTTG
ACGCTCCACATGGCGGCGGGGTCCCTGGCTCTCAAAGGCGAGCTCAACGT
TGGCGTTCTTGCACAGAACGCCGCGCTCGCGACCGTGGTCTACAACCGCA
CGGTCGAGAAATTTCCCAAGACTTCCACCCTCGTCGACCCACGGCCGGTT
CATTTCATCCACTACGACGCACAATCTCATGAAGACGCCGAAGCGACATG
CAAGAAATTGAACAGAGAGGCGGACCGTGCGCGAGTTGTGGTCCTTCCAC
GACCATTCCCAAGGTCGGACACCGGGCACCGCCTCCTGAACAACTACGAG
GTGGTGTACAGCGAGGAAGGACTAGCGACAACGGTAAACACGGCCAGGAA
AGATGCTGCCTACTTTCGCGGGCTGGACTGGACAAACGACTTTGGAAAAT
GGGGACACGTGGCGACCCCATGGCGAGACCACTACCCGAACTGCTGGCGA
GATCTCGTCAACGACGTGAACGAAGGACTCCGGCACATATACGATCGCAA
CCCGAGGAACATCTTGCGTGATACGCACTTCCCTGAAGAGTTTGGTGGTG
ACCATTTGGAATGGCTTGAGGGTGAAACAAACACCCGTTGA
back to top