mRNA_Ecto-sp13_S_contig7504.18698.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7504.18698.1
Unique NamemRNA_Ecto-sp13_S_contig7504.18698.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7504.18698.1 vs. uniprot
Match: D7FHL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL8_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 2.260e-81
Identity = 145/158 (91.77%), Postives = 147/158 (93.04%), Query Frame = 1 
Query:  133 TFDRCRAADACRRCSLDVTTTTSDANERWQRQGRQGQGDSRGQRRGRRSSELWGGKVGKLASSKPSEDFAGEGRADGGSTTAGVAQGREALGGGGGGSVASVNQRQGAVPPSEGVLGADSPVTSAAVAEAGRGKDKDSLEWSEVGTECQKRVYICTNR 606
            TF+RCRAADACRRCSLDVT TTSDANERWQRQ RQ QG SRGQRRGRRSSELW GKVGKLASSKPSEDFAGEGRADGGSTTAGVAQGREALGGGG  S AS+NQRQGA P SE VLGADSPVTSAAVAEAGRGKDKDSLEWSEVGTECQKRVYICTNR
Sbjct:   45 TFNRCRAADACRRCSLDVTPTTSDANERWQRQERQWQGGSRGQRRGRRSSELWWGKVGKLASSKPSEDFAGEGRADGGSTTAGVAQGREALGGGG--SAASMNQRQGA-PASEEVLGADSPVTSAAVAEAGRGKDKDSLEWSEVGTECQKRVYICTNR 199
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BLAST of mRNA_Ecto-sp13_S_contig7504.18698.1 vs. uniprot
Match: A0A6H5JBU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU1_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 3.690e-52
Identity = 102/130 (78.46%), Postives = 108/130 (83.08%), Query Frame = 1 
Query:    1 MTLKMIAAKKSAGGIVVFLAASCSKAVSFMASPASTTSLAAASWTFDRCRAADACRRCSLDVTTTTSDANERWQRQGRQGQGDSRGQRRGRRSSELWGGKVGKLASSKPSEDFAGEGRADGGSTTAGVAQ 390
            MTLKMIAAKKSAG +VVFLAASCSKAVSFM SP+ST+++AA SWTF+RCRAADACRRCSLDVTTTTSDANERW                 RRSSELWGGKVGKLASSKPSEDFA EGRADGGSTTAG AQ
Sbjct:    1 MTLKMIAAKKSAGAVVVFLAASCSKAVSFMPSPSSTSAVAA-SWTFNRCRAADACRRCSLDVTTTTSDANERWXXXXXXXXXXXXXXXXXRRSSELWGGKVGKLASSKPSEDFAREGRADGGSTTAGAAQ 129
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7504.18698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHL8_ECTSI2.260e-8191.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBU1_9PHAE3.690e-5278.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7504contigEcto-sp13_S_contig7504:4135..7074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size645
Hectar predicted targeting categorysignal peptide
Exons3
Cds size645
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464019.702563-CDS-Ecto-sp13_S_contig7504:4134..44001681464019.702563-CDS-Ecto-sp13_S_contig7504:4134..4400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7504 4135..4400 -
1681464019.715716-CDS-Ecto-sp13_S_contig7504:5263..55221681464019.715716-CDS-Ecto-sp13_S_contig7504:5263..5522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7504 5264..5522 -
1681464019.7264564-CDS-Ecto-sp13_S_contig7504:6954..70741681464019.7264564-CDS-Ecto-sp13_S_contig7504:6954..7074Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7504 6955..7074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7504.18698.1prot_Ecto-sp13_S_contig7504.18698.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7504 4135..7074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7504.18698.1

>prot_Ecto-sp13_S_contig7504.18698.1 ID=prot_Ecto-sp13_S_contig7504.18698.1|Name=mRNA_Ecto-sp13_S_contig7504.18698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=215bp
MTLKMIAAKKSAGGIVVFLAASCSKAVSFMASPASTTSLAAASWTFDRCR
AADACRRCSLDVTTTTSDANERWQRQGRQGQGDSRGQRRGRRSSELWGGK
VGKLASSKPSEDFAGEGRADGGSTTAGVAQGREALGGGGGGSVASVNQRQ
GAVPPSEGVLGADSPVTSAAVAEAGRGKDKDSLEWSEVGTECQKRVYICT
NRQGGGGGGAARDF*
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mRNA from alignment at Ecto-sp13_S_contig7504:4135..7074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7504.18698.1 ID=mRNA_Ecto-sp13_S_contig7504.18698.1|Name=mRNA_Ecto-sp13_S_contig7504.18698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2940bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7504:4135..7074- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTTGAAGATGATCGCGGCCAAGAAGAGCGCAGGCGGTATCGTGGT
CTTCCTGGCGGCATCATGCAGCAAAGCTGTGTCCTTCATGGCCTCTCCCG
CATCTACCACATCTCTAGCGGTAAGTGTTGTCAAGGCAACTCGAATTCTG
GACTACTGCTGCATCTAGTTTCTTTTCAACCTACTGTAAGCCCTTGATTA
TCATTACCAGCTGGGAGGTACAGCAGCCACAGACACGGCGGTATTGCTGA
CGAGCGGGCGTTGTAGACCAGACAGAGGCAAGACGAGGTATCGGTGCGTC
GATTGCCGTGGTTATCTTTTGGCGTTTGCCAGGTGTTGCTGTTGACGTTG
AACGTTGAACGTTGAACTCAACCTTCCCCGAACCGATCGGACAGCCGCGG
TGCACCGTACTTCGCACATTGTAGTGTGGCTACGTGGTTACGAAAAGTGC
TCATGGTCTAGTTGCGGTAGGGGCATCAAAGTTCAGCTTTCGACAGCCGT
GCCTTGTTGTAGTGATTATAGGTCGTCTTGCGTCGGCCGGTCGGCTGGTC
TGCTGCCGCACACACATCCTAAAGTGAGATGAGAAAGAAGCTGTGGCATG
GTGCTCATGGCTACGAGTCTGCCGGATCTGCCGTGGACGCTATTTAGCAG
CGCAGGTCATCAGCGACGTAGCTGCGTGTGTTCAGCTTTGACAAGTCGGT
ACCATAGTTGGGAAGGAGACCAACAAGTAATCCGCGTCCCTGCTGTGCTG
TTGATCACAGCAGCGGGGGAAACACCTCACTCTCGCAGCGGAAAGCGTGG
TGTAGTTCGAGCTTGAGCGTGCGATGCGGCACAATTGCCTGCTCACCCGT
CCGTAGTACCCGCCTTCCAGCTTTTCCGTAAGTAGGATACTACTGTGGGT
CGAGTACGGAAAGCGGTGTTCTGAGCCGATAGGTTGTGGGCGTTTCAATT
GTTTTACGTGATGTGGTGAAATGCGGACGGCAGTTACCCGAACCTTATTC
TTCGAAGTCCTGTACTGTATAATGGGTTGTCCAATGCATCAGCGGTGGAC
CCCCGATCGTATCAAAGGTCAACAACGAGTACCGCACAGGCAATGCGGTG
GAACAACGCGGCGACCGAACGTGTTGACCTGACGTAGCTCAAGCACTTTT
TATCGGAGTCACTCCATGTACCACGCACCCTTACCCCCACAGCAGAGATT
GTGCCGGAGCCAGCAACGAGAAACGACACATCATCCCGCGTGTGATCTCT
CCGATCCCTGTGAGGAAATGCTTTTCATCCTTCTCTTGATTGATTTTCGC
AAGATGGTGCATCTCCCAGGAGCCTTGCCAAATATCCGACTATTACGGTA
TCTGTAAATACCGGACGCACGTTGCGGTAAACGACACACGTTAGTGGCAA
AGGTGTTTGTCCACACACCATGGGCGATGGGTCCTGCGGGAACAATGCCC
CGTCCCCTCGGGGAAGCGTGGTCAATGATCTGACAACTGAGGCATGCGAA
ACATGATTGCGCCCCTGCGGCGACTCTGTTGCATTTCGCCTTTGATCCCT
AGGCTGCTTCGTGGACCTTCGACCGCTGTCGAGCTGCGGACGCATGCCGC
CGCTGCTCGTTAGATGTCACCACCACAACGTCCGACGCAAACGAAAGATG
GCAAAGGCAAGGACGGCAAGGGCAAGGGGATAGCAGAGGACAAAGGCGAG
GCAGGAGGAGTAGCGAGCTGTGGGGGGGGAAGGTCGGGAAGCTGGCGTCC
TCAAAACCTTCGGAAGACTTCGCTGGAGAGGGACGAGCAGATGGCGGATC
AACTACAGCAGGTGCGGCACAATTAGCAACAATAGAAATTGTTCCGAGAT
TTTCACGAGATTTTCACCCCGTGATATCCACGTCTCTTCGCTCCGTAGAC
CGGCCGTTTGGCATGTCAGCTGCTGTGAAAGCCGACAAGAAATAGCTGTA
GAGGATTGGATGAACTAAGTTCACGCTCGGGTAGGGTTTGTTGATGATAT
TCCACCGCATAATCCTCTAGAGCGGGGATGGATCCCGCAGGGTACTTGCG
AGACAGGGCAAATGTTGGCGCTGTGATGCGTTTGATTTCGCTAGTCTCGA
GGTGTTTGGTCTTGTTCGACCTCCAGAACGCCTTTGAGGGCGGACTTGGG
GCACACCCTTCCCCCGGTGGTGGCAGAATGTACGTCTTCTGTGTACCTCC
CTGATCAAATCATGTAGGGAATACATAGTCCTGTCCTGAGTTGGAATTTT
TCGAGGTTGCCCTATTCTGTTTTTTTCTAAACATTATGCTCCCTTTTAAA
GGCAAGCAAGGGTTCTTTTTTTTGCCAATTATGCAGGAAACTATGCCCAA
AACTGTCTGTCATGCTCGTTTTTTGGTCAATTTTGCTCGATTCGGTAAAG
TTTCGGTAAATTATGCTCGAATTATGCCGAAAACAATTCGTTACTCTCTT
CTCCTTTTTGACACCCGAGCATAATGGGGATGGCTCTAGGACAGTGCATC
CTTGTGTGTGCACCCCGCGAGCCTATGGGCTCAGTACATAGCTAGCGCCA
CGGGAAGGGTAAGCAGTATCTTCTCGGACATGCATGCGGCGTCCCGATAC
GGCGGCACAGCACAGCATAACCCCCCTCCCCCCTCCCCCAACGTGTTGTT
CGGCTACTCTGTTATCATGGGCAGGTGTCGCACAAGGCCGCGAGGCTCTA
GGGGGAGGGGGAGGGGGCTCCGTGGCATCAGTGAACCAACGACAGGGGGC
GGTGCCGCCCTCGGAAGGGGTTCTGGGAGCGGACTCTCCGGTGACATCGG
CGGCGGTGGCGGAAGCAGGCAGGGGGAAGGATAAGGATAGCCTGGAGTGG
TCCGAAGTGGGGACCGAGTGCCAGAAGAGGGTCTACATCTGCACCAACAG
GCAAGGGGGGGGGGGGGGGGGGGCCGCACGTGATTTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7504:4135..7074-

>mRNA_Ecto-sp13_S_contig7504.18698.1 ID=mRNA_Ecto-sp13_S_contig7504.18698.1|Name=mRNA_Ecto-sp13_S_contig7504.18698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7504:4135..7074- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTTGAAGATGATCGCGGCCAAGAAGAGCGCAGGCGGTATCGTGGT
CTTCCTGGCGGCATCATGCAGCAAAGCTGTGTCCTTCATGGCCTCTCCCG
CATCTACCACATCTCTAGCGGCTGCTTCGTGGACCTTCGACCGCTGTCGA
GCTGCGGACGCATGCCGCCGCTGCTCGTTAGATGTCACCACCACAACGTC
CGACGCAAACGAAAGATGGCAAAGGCAAGGACGGCAAGGGCAAGGGGATA
GCAGAGGACAAAGGCGAGGCAGGAGGAGTAGCGAGCTGTGGGGGGGGAAG
GTCGGGAAGCTGGCGTCCTCAAAACCTTCGGAAGACTTCGCTGGAGAGGG
ACGAGCAGATGGCGGATCAACTACAGCAGGTGTCGCACAAGGCCGCGAGG
CTCTAGGGGGAGGGGGAGGGGGCTCCGTGGCATCAGTGAACCAACGACAG
GGGGCGGTGCCGCCCTCGGAAGGGGTTCTGGGAGCGGACTCTCCGGTGAC
ATCGGCGGCGGTGGCGGAAGCAGGCAGGGGGAAGGATAAGGATAGCCTGG
AGTGGTCCGAAGTGGGGACCGAGTGCCAGAAGAGGGTCTACATCTGCACC
AACAGGCAAGGGGGGGGGGGGGGGGGGGCCGCACGTGATTTTTAA
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