mRNA_Ecto-sp13_S_contig7504.18697.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7504.18697.1 vs. uniprot
Match: D7FHL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL8_ECTSI) HSP 1 Score: 347 bits (890), Expect = 4.840e-117 Identity = 173/179 (96.65%), Postives = 175/179 (97.77%), Query Frame = 2
Query: 2 WCMEKGSSATLGSFVGLAPEGEVLVQGVNCLGRCNKGPNVRVRQENGNWLEFNRIENVERVYKILRDYLGADVSKEAALCLKYNFLANAALDRNEVTLAIDYYDKAIDTGYADQQGVLLVRTSCGREG*WCETAVVDDEVMRATAFIQRAYSHGRALTELLQKVVVDRPTQTTLDVLHE 538
WCMEKGS+ATLGSFVGLAPEGEVLVQGVNCLGRCNKGPNVRVRQE GNWLEFNRIENVERVYKILRDYLGADVSKEAALCLKYNFLANAAL+RNEVTLAIDYYDKAIDTGYADQQGVLLVRTSCGREG WC T VVDDEVMRATAFIQRAYSHGRALTELLQKVVVDRPTQTTLDVLHE
Sbjct: 200 WCMEKGSAATLGSFVGLAPEGEVLVQGVNCLGRCNKGPNVRVRQETGNWLEFNRIENVERVYKILRDYLGADVSKEAALCLKYNFLANAALNRNEVTLAIDYYDKAIDTGYADQQGVLLVRTSCGREGSWCGT-VVDDEVMRATAFIQRAYSHGRALTELLQKVVVDRPTQTTLDVLHE 377
BLAST of mRNA_Ecto-sp13_S_contig7504.18697.1 vs. uniprot
Match: A0A835YYQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ6_9STRA) HSP 1 Score: 206 bits (525), Expect = 8.180e-62 Identity = 111/195 (56.92%), Postives = 131/195 (67.18%), Query Frame = 2
Query: 2 WCMEKGSSATLGSFVGLAPEGEVLVQGVNCLGRCNK----------------GPNVRVRQENGNWLEFNRIENVERVYKILRDYLGADVSKEAALCLKYNFLANAALDRNEVTLAIDYYDKAIDTGYADQQGVLLVRTSCGREG*WCETAVVDDEVMRATAFIQRAYSHGRALTELLQKVVVDRPTQTTLDVLHE 538
WC E+GS ATL SFVGLAPE EVLVQGVNCLGRCN GPN+RV QE+G WLEFNRI++VERVYKILRD+L VS+ AA CLKYNF N+ LD+NEVT AI+ Y+KAI G+ADQ+GVLLV MRATA++QRAYSH RALT LL +V D P TL+++H+
Sbjct: 30 WCKERGSGATLSSFVGLAPEDEVLVQGVNCLGRCNXXXXXXXXXXXXXXXXXGPNLRVLQEDGTWLEFNRIDSVERVYKILRDFLSVGVSRTAAECLKYNFQGNSHLDKNEVTEAIECYNKAISMGWADQEGVLLV--------------------MRATAYLQRAYSHRRALTALLSRVARDMPGTGTLEIIHK 204
BLAST of mRNA_Ecto-sp13_S_contig7504.18697.1 vs. uniprot
Match: A0A7R9U417_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U417_9STRA) HSP 1 Score: 166 bits (420), Expect = 3.300e-47 Identity = 81/153 (52.94%), Postives = 104/153 (67.97%), Query Frame = 2
Query: 2 WCMEKGSSATLGSFVGLAPEGEVLVQGVNCLGRCNKGPNVRVRQENGNWLEFNRIENVERVYKILRDYLGADVSKEAALCLKYNFLANAALDRNEVTLAIDYYDKAIDTGYADQQGVLLVRTSCGREG*WCETAVVDDEVMRATAFIQRAYSH 460
WC EKGS ATL SF+GL P+ VLV GV CLG+CNKGPN+++ NG W E NR+++V++VY+IL D+L VS AA CL++NF NA LDRNEVT AI Y+KAID G+ DQ+GV+LV MR+TA++QRA+SH
Sbjct: 49 WCKEKGSGATLASFIGLIPDDNVLVSGVGCLGKCNKGPNIQIMHRNGTWYELNRVDSVDKVYRILTDHLQCRVSPAAAECLQHNFEGNAHLDRNEVTQAIASYNKAIDAGFKDQEGVILV--------------------MRSTAYLQRAFSH 181
BLAST of mRNA_Ecto-sp13_S_contig7504.18697.1 vs. uniprot
Match: W7U8R6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U8R6_9STRA) HSP 1 Score: 147 bits (370), Expect = 1.780e-39 Identity = 76/179 (42.46%), Postives = 110/179 (61.45%), Query Frame = 2
Query: 2 WCMEKGSSATLGSFVGLAPEG-EVLVQGVNCLGRCNKGPNVRVRQENGNWLEFNRIENVERVYKILRDYLGADVSKEAALCLKYNFLANAALDRNEVTLAIDYYDKAIDTGYADQQGVLLVRTSCGREG*WCETAVVDDEVMRATAFIQRAYSHGRALTELLQKVVVDRPTQTTLDVLH 535
WCM++G+ AT+GSF+GL P G +V VQGV+CLGRCN+GPN+R+ + NG + E + +++V++VY + LG +++ +A CLK NF NA LD+NEV AI+ YDKAI + Q+GVL VMR+TA++QRAY+H EL+++ P Q L L
Sbjct: 203 WCMQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVL--------------------RVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQ 361
BLAST of mRNA_Ecto-sp13_S_contig7504.18697.1 vs. uniprot
Match: A0A4D9DHN8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DHN8_9STRA) HSP 1 Score: 139 bits (350), Expect = 2.760e-37 Identity = 74/177 (41.81%), Postives = 108/177 (61.02%), Query Frame = 2
Query: 8 MEKGSSATLGSFVGLAPEG-EVLVQGVNCLGRCNKGPNVRVRQENGNWLEFNRIENVERVYKILRDYLGADVSKEAALCLKYNFLANAALDRNEVTLAIDYYDKAIDTGYADQQGVLLVRTSCGREG*WCETAVVDDEVMRATAFIQRAYSHGRALTELLQKVVVDRPTQTTLDVLH 535
M++G+ AT+GSF+GL P G +V VQGV+CLGRCN+GPN+R+ + NG + E + +++V++VY + LG +++ +A CLK NF NA LD+NEV AI+ YDKAI + Q+GVL VMR+TA++QRAY+H EL+++ P Q L L
Sbjct: 1 MQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVL--------------------RVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQ 157
BLAST of mRNA_Ecto-sp13_S_contig7504.18697.1 vs. uniprot
Match: A0A7S3XUL9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUL9_HETAK) HSP 1 Score: 90.1 bits (222), Expect = 1.450e-18 Identity = 52/145 (35.86%), Postives = 79/145 (54.48%), Query Frame = 2
Query: 62 GEVLVQGVNCLGRCNKGPNVRVRQENGNWLEFNRIENVERVYKILRDYLGADVSKEAALCLKYNFLANAALDRNEVTLAIDYYDKAIDTGYA-DQQGVLLVRTSCGREG*WCETAVVDDEVMRATAFIQRAYSHGRALTELLQKV 493
G V V GV+CLGRC +GPNVR + WL+F+ +++V++ +IL + +G VS++ A CL N N L N+V A+++YD+A+ G DQ+GV+ + MRATA +QRA H + Q+V
Sbjct: 5 GAVNVDGVSCLGRCKRGPNVRCQLGRDAWLDFSGVDSVDQARQILVETMGVPVSQKVATCLDMNLKGNYYLANNKVGKALEHYDRALAAGRGTDQEGVVAL--------------------MRATARLQRALGHRGQMEGAAQRV 129
BLAST of mRNA_Ecto-sp13_S_contig7504.18697.1 vs. uniprot
Match: A0A7S1Z4G4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z4G4_TRICV) HSP 1 Score: 81.6 bits (200), Expect = 1.170e-15 Identity = 46/129 (35.66%), Postives = 74/129 (57.36%), Query Frame = 2
Query: 158 NRIENVERVYKILRDYLG-ADVSKEAALCLKYNFLANAALDRNEVTLAIDYYDKAIDTGYADQQGVLLVRTSCGREG*WCETAVVDDEVMRATAFIQRAYSHGRALTELLQKVVVDRPTQTTLDVLHEV 541
N +++V++VY+IL ++G A +S A CLK+N+ NA L++ ++ AI YDKAIDTGY +Q+GV+L+ MRATA+++RA+ H R L ++ + P +L L+ V
Sbjct: 2 NNVDSVDKVYRILTKHMGIAGISSVACECLKWNYRGNAHLEKGDIADAIAAYDKAIDTGYVEQEGVVLL--------------------MRATAYLKRAFEHQRELKTVVSDLSDAVPDPQSLRALYGV 110
BLAST of mRNA_Ecto-sp13_S_contig7504.18697.1 vs. uniprot
Match: A0A1Z5JQ11_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQ11_FISSO) HSP 1 Score: 82.0 bits (201), Expect = 3.250e-15 Identity = 48/164 (29.27%), Postives = 86/164 (52.44%), Query Frame = 2
Query: 8 MEKGSSATLGSFVGLAPEGEVLVQGVNCLGRCNKGPNVR-VRQENGNWLEFNRIENVERVYKILRDYLGADVSKEAALCLKYNFLANAALDRNEVTLAIDYYDKAIDTGYADQQGVLLVRTSCGREG*WCETAVVDDEVMRATAFIQRAYSHGRALTELLQKVV 496
+EK ++ L +F+ LAP + V KG +R + + E + +++V++VY+IL ++ VS + CLK+ + N L+ ++ LAID YDKAI+TG Q+G++L+ MR+TA++QRA +H L E++ +++
Sbjct: 67 LEKRANTALDAFLALAPSSVEVTPAV--FKSKAKGGMIRCISSKKNKTFEVSNVDSVDKVYRILTKHMELKVSTKVCDCLKWKYKGNGHLEAGQIDLAIDAYDKAIETGVTQQEGIVLL--------------------MRSTAYLQRAITHRTTLKEIVNELI 208
BLAST of mRNA_Ecto-sp13_S_contig7504.18697.1 vs. uniprot
Match: A0A7S3L8D0_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8D0_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 2.690e-11 Identity = 48/169 (28.40%), Postives = 90/169 (53.25%), Query Frame = 2
Query: 8 MEKGSSATLGSFVGLAPEGEVLVQGVNCLGRCNKG--PNVR-VRQENGNWLEFNRIENVERVYKILRDYLGAD-VSKEAALCLKYNFLANAALDRNEVTLAIDYYDKAIDTGYAD--QQGVLLVRTSCGREG*WCETAVVDDEVMRATAFIQRAYSHGRALTELLQKVV 496
MEKG++ATL +F+ L V V+ + G P +R V + + +E +++V++VY++L ++ + +S+ A CL+Y + AN L+ +V+LAI+ Y KA+ + D Q+GV+L +R+ A++QRA H L +++Q+++
Sbjct: 93 MEKGAAATLDAFLSLTQSRRVQVKAAFLPKQTKSGGYPWIRCVSIQKSSAIELFGVDSVDKVYRVLTKHMQIEGISRRACRCLQYKYKANGFLEAGKVSLAIEAYQKALQSSKGDKQQEGVILF--------------------LRSAAYLQRAEQHRDELKDIVQELI 241 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7504.18697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7504.18697.1 >prot_Ecto-sp13_S_contig7504.18697.1 ID=prot_Ecto-sp13_S_contig7504.18697.1|Name=mRNA_Ecto-sp13_S_contig7504.18697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp MEKGSSATLGSFVGLAPEGEVLVQGVNCLGRCNKGPNVRVRQENGNWLEFback to top mRNA from alignment at Ecto-sp13_S_contig7504:465..3159- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7504.18697.1 ID=mRNA_Ecto-sp13_S_contig7504.18697.1|Name=mRNA_Ecto-sp13_S_contig7504.18697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2695bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7504:465..3159- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7504:465..3159- >mRNA_Ecto-sp13_S_contig7504.18697.1 ID=mRNA_Ecto-sp13_S_contig7504.18697.1|Name=mRNA_Ecto-sp13_S_contig7504.18697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7504:465..3159- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |