mRNA_Ecto-sp13_S_contig7500.18693.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7500.18693.1
Unique NamemRNA_Ecto-sp13_S_contig7500.18693.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7500.18693.1 vs. uniprot
Match: A0A6H5JL55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 6.650e-61
Identity = 114/125 (91.20%), Postives = 115/125 (92.00%), Query Frame = 3 
Query:    9 MVRLLHVTIFEGVGVAPHKEPYACAELLDITGRPIKKERVKTKTVTPGSKLVWGEESPRPSSNSRGGXXXXGGRSPVRGTLGSGETKYDEDGAPSSGGVSLTLGRKHDLRNVGALPVLRLSLWGR 383
            MVRLLHVTIFEGVGVAPHKEPYACAELLDITGRPIKKERVKTKTVTPGSKLVWGEESP PSS     XXX GG+SPVRG LGSGETK DEDGAPSS GVSLTLGRKHDLRNVGALPVLRLSLWGR
Sbjct:    1 MVRLLHVTIFEGVGVAPHKEPYACAELLDITGRPIKKERVKTKTVTPGSKLVWGEESPSPSSXXX--XXXGGGQSPVRGALGSGETKRDEDGAPSSRGVSLTLGRKHDLRNVGALPVLRLSLWGR 123
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BLAST of mRNA_Ecto-sp13_S_contig7500.18693.1 vs. uniprot
Match: D8LF91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF91_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 3.730e-59
Identity = 113/125 (90.40%), Postives = 114/125 (91.20%), Query Frame = 3 
Query:    9 MVRLLHVTIFEGVGVAPHKEPYACAELLDITGRPIKKERVKTKTVTPGSKLVWGEESPRPSSNSRGGXXXXGGRSPVRGTLGSGETKYDEDGAPSSGGVSLTLGRKHDLRNVGALPVLRLSLWGR 383
            MVRLLHVTIFEGVGVAPHKEPYACAELLDITGRPIKKERVKTKTVTPGSKLVWGEESP  S      XXXX GRSPVRG LGSGETK +EDGAPSSGGVSLTLGRKHDLRNVGALPVLRLSLWGR
Sbjct:    1 MVRLLHVTIFEGVGVAPHKEPYACAELLDITGRPIKKERVKTKTVTPGSKLVWGEESP--SXXXXXXXXXXXGRSPVRGALGSGETKREEDGAPSSGGVSLTLGRKHDLRNVGALPVLRLSLWGR 123
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7500.18693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JL55_9PHAE6.650e-6191.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF91_ECTSI3.730e-5990.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7500contigEcto-sp13_S_contig7500:2046..2676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score209.5
Seed ortholog evalue8.8e-52
Seed eggNOG ortholog2880.D8LF91
Model size384
KEGG koko:K19949,ko:K22125,ko:K22127
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1326@1,KOG1326@2759
Cds size375
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464019.3827808-UTR-Ecto-sp13_S_contig7500:2045..20531681464019.3827808-UTR-Ecto-sp13_S_contig7500:2045..2053Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7500 2046..2053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464019.3942144-CDS-Ecto-sp13_S_contig7500:2053..21821681464019.3942144-CDS-Ecto-sp13_S_contig7500:2053..2182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7500 2054..2182 +
1681464019.4043522-CDS-Ecto-sp13_S_contig7500:2430..26761681464019.4043522-CDS-Ecto-sp13_S_contig7500:2430..2676Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7500 2431..2676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7500.18693.1prot_Ecto-sp13_S_contig7500.18693.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7500 2054..2676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7500.18693.1

>prot_Ecto-sp13_S_contig7500.18693.1 ID=prot_Ecto-sp13_S_contig7500.18693.1|Name=mRNA_Ecto-sp13_S_contig7500.18693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MVRLLHVTIFEGVGVAPHKEPYACAELLDITGRPIKKERVKTKTVTPGSK
LVWGEESPRPSSNSRGGGGSGGGRSPVRGTLGSGETKYDEDGAPSSGGVS
LTLGRKHDLRNVGALPVLRLSLWGR
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mRNA from alignment at Ecto-sp13_S_contig7500:2046..2676+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7500.18693.1 ID=mRNA_Ecto-sp13_S_contig7500.18693.1|Name=mRNA_Ecto-sp13_S_contig7500.18693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=631bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7500:2046..2676+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGACATCATGGTGCGCCTGCTGCACGTGACGATATTCGAGGGGGTCGGG
GTGGCGCCTCACAAGGAGCCCTACGCCTGTGCCGAGCTGCTCGACATCAC
GGGGCGCCCGATCAAGAAGGAGCGAGTTAAGACGAAGGTGTGCTCGCGAA
CGCAGCAAAATCCGATGCTATATAAAGGTGGTTTGCTACAGCAGCTTGCT
TGCAGCAGGAGAGAGGGTTCTTTCTTCGGAAGAGTAGAGCTGGTTAAGTC
CTGAAAGTCAAAACTTGTAGCACATTCCTGCGTGTGGATACTAGTCTACC
TGCGGAGAAAACAACCCTCTCGAGTTCTTCATTCCCCCCCCACTCCAAAA
TATTCGTGCACTTTCATTTCTCTCTTGTGTAACAGACGGTCACCCCTGGC
TCCAAGCTTGTCTGGGGCGAGGAGAGCCCAAGGCCAAGCAGCAACAGCCG
CGGCGGCGGCGGCAGCGGCGGCGGCCGAAGTCCCGTGAGAGGGACGTTGG
GCAGCGGAGAGACGAAGTACGACGAAGATGGCGCGCCGTCGAGCGGGGGC
GTCTCGCTGACGCTCGGGCGCAAGCACGACCTGCGCAACGTGGGCGCGCT
CCCGGTGCTCCGGCTGTCGCTGTGGGGGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7500:2046..2676+

>mRNA_Ecto-sp13_S_contig7500.18693.1 ID=mRNA_Ecto-sp13_S_contig7500.18693.1|Name=mRNA_Ecto-sp13_S_contig7500.18693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7500:2046..2676+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCGCCTGCTGCACGTGACGATATTCGAGGGGGTCGGGGTGGCGCC
TCACAAGGAGCCCTACGCCTGTGCCGAGCTGCTCGACATCACGGGGCGCC
CGATCAAGAAGGAGCGAGTTAAGACGAAGACGGTCACCCCTGGCTCCAAG
CTTGTCTGGGGCGAGGAGAGCCCAAGGCCAAGCAGCAACAGCCGCGGCGG
CGGCGGCAGCGGCGGCGGCCGAAGTCCCGTGAGAGGGACGTTGGGCAGCG
GAGAGACGAAGTACGACGAAGATGGCGCGCCGTCGAGCGGGGGCGTCTCG
CTGACGCTCGGGCGCAAGCACGACCTGCGCAACGTGGGCGCGCTCCCGGT
GCTCCGGCTGTCGCTGTGGGGGCGA
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