mRNA_Ecto-sp13_S_contig750.18692.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig750.18692.1
Unique NamemRNA_Ecto-sp13_S_contig750.18692.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig750.18692.1 vs. uniprot
Match: D8LR06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR06_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 9.650e-37
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = -1 
Query:   49 GSCT-VITDLRQRASRCRGGSVGICRCSRRAYQGGEQQQGL-LRVGGRSRSPLGNGEQTPAETDNPVGTCSREYW 267
            GSCT VITDLRQRASRCRGGSVGICRCSRRAYQGGEQ QG  L V GRSRSPLGNGE+T  +TDNPVGTCSREYW
Sbjct:   19 GSCTAVITDLRQRASRCRGGSVGICRCSRRAYQGGEQPQGFFLPVVGRSRSPLGNGEKTSTKTDNPVGTCSREYW 93
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BLAST of mRNA_Ecto-sp13_S_contig750.18692.1 vs. uniprot
Match: A0A6H5KB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB56_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 3.000e-32
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = -1 
Query:   82 DVGGAALGFSVGRFSR*RGSCTVITDLRQRASRCRGGSVGICRCSRRAYQGGEQQQGLLRVGGRSRSPLGNGEQTPAETD 321
            D GGAA GF +G      GSC+VITDLRQRASRCRGGSV ICRCSRRAYQGGEQQQG L VG  SRSPLGNG  TPAE D
Sbjct:    3 DEGGAAQGFLLGGSQDEGGSCSVITDLRQRASRCRGGSVRICRCSRRAYQGGEQQQGSLLVGWWSRSPLGNGVNTPAEAD 82
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BLAST of mRNA_Ecto-sp13_S_contig750.18692.1 vs. uniprot
Match: D8LGJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ8_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 8.680e-12
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = -2 
Query:  138 EGGAAQ-SSQISANALPDVEGAAWAFVVVVGALTRVASSSRGFC--GW 272
            +GGAAQ SSQISANALPDV GAAWAFVVVVGALTRV SSSR F   GW
Sbjct:    2 KGGAAQQSSQISANALPDVGGAAWAFVVVVGALTRVVSSSRFFLAGGW 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig750.18692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR06_ECTSI9.650e-3786.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB56_9PHAE3.000e-3276.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGJ8_ECTSI8.680e-1283.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig750contigEcto-sp13_S_contig750:20609..20941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size335
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464019.0889273-CDS-Ecto-sp13_S_contig750:20608..209411681464019.0889273-CDS-Ecto-sp13_S_contig750:20608..20941Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig750 20609..20941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig750.18692.1prot_Ecto-sp13_S_contig750.18692.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig750 20609..20941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig750.18692.1

>prot_Ecto-sp13_S_contig750.18692.1 ID=prot_Ecto-sp13_S_contig750.18692.1|Name=mRNA_Ecto-sp13_S_contig750.18692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MPSHIVRPHMRQLQLLPVFSATGTNRIVGLSGGLLSIAKWTPAPPTHPQK
PLLLLATLVSAPTTTTNAHAAPSTSGSALAEICDDCAAPPSSGEPPNRKA
QRCPPYIWRRA
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mRNA from alignment at Ecto-sp13_S_contig750:20609..20941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig750.18692.1 ID=mRNA_Ecto-sp13_S_contig750.18692.1|Name=mRNA_Ecto-sp13_S_contig750.18692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig750:20609..20941+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCTCCCATATTGTGCGACCACACATGAGACAGCTCCAATTGCTACC
AGTATTCTCTGCTACAGGTACCAACCGGATTGTCGGTCTCAGCGGGGGTC
TGCTCTCCATTGCCAAGTGGACTCCGGCTCCTCCCACCCACCCGCAAAAG
CCCCTGCTGCTGCTCGCCACCCTGGTAAGCGCGCCGACTACAACGACAAA
TGCCCACGCTGCCCCCTCTACATCTGGAAGCGCGTTGGCGGAGATCTGTG
ATGACTGTGCAGCTCCCCCTTCATCTGGAGAACCGCCCAACCGAAAAGCC
CAGCGCTGCCCCCCCTACATCTGGAGGCGTGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig750:20609..20941+

>mRNA_Ecto-sp13_S_contig750.18692.1 ID=mRNA_Ecto-sp13_S_contig750.18692.1|Name=mRNA_Ecto-sp13_S_contig750.18692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig750:20609..20941+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCTCCCATATTGTGCGACCACACATGAGACAGCTCCAATTGCTACC
AGTATTCTCTGCTACAGGTACCAACCGGATTGTCGGTCTCAGCGGGGGTC
TGCTCTCCATTGCCAAGTGGACTCCGGCTCCTCCCACCCACCCGCAAAAG
CCCCTGCTGCTGCTCGCCACCCTGGTAAGCGCGCCGACTACAACGACAAA
TGCCCACGCTGCCCCCTCTACATCTGGAAGCGCGTTGGCGGAGATCTGTG
ATGACTGTGCAGCTCCCCCTTCATCTGGAGAACCGCCCAACCGAAAAGCC
CAGCGCTGCCCCCCCTACATCTGGAGGCGTGCA
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