mRNA_Ecto-sp13_S_contig75.18688.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75.18688.1
Unique NamemRNA_Ecto-sp13_S_contig75.18688.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig75.18688.1 vs. uniprot
Match: D7FZ34_ECTSI (Carnitine/acylcarnitine translocase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ34_ECTSI)

HSP 1 Score: 489 bits (1260), Expect = 3.000e-173
Identity = 259/287 (90.24%), Postives = 266/287 (92.68%), Query Frame = 1
Query:    1 MLQPLDSVLVRVQAGTAAGSSSLAAAIRDLLSSGSGARSLWKGATPMMWSVPAQNALLFAGYGAGLGWCSQGERQQDGDPSSLWHVFAGGCAGGFAQSFVMSPVELVKVRLQLQDRAVLSAAAAGTGSRGGGAFALATGVVRTFGLSGLLSTGLGATMGRDVLPHGVWFASYEWCKQEFSAREGVKACDNGALSVGAQLASGGIAATTAWLVGYPFDVIKTRIQAAGMRKVPDGVVATARHMASVDGMGVFYRGFGLKLARAVPMSMIGFFAYEVAAKRLRDMIATS 861
            + QPLDSVLVRVQAGTAAGSSSL AAIRDLLSSG GARSLWKGA PMMWSVPAQNALLFAGYGAGLGWCS G R+QDG PSSLWHVFAGGCAGGFAQSFVMSPVELVKVRLQL+DR VLSAAA          FALATGVVRTFGLSGLLSTGLGATMGRDVLPHGVWFASYEWCKQEFSAREGVKACDNGALSV AQLASGGIAATTAWLVGYPFDVIKTRIQAAGM KVP GVVATA+HMASVDGMGVFYRGFGLKLARAVPMSMIGFFAYEVAAK+LRDM+A+S
Sbjct:   21 LTQPLDSVLVRVQAGTAAGSSSLPAAIRDLLSSGGGARSLWKGAAPMMWSVPAQNALLFAGYGAGLGWCSGG-RRQDGAPSSLWHVFAGGCAGGFAQSFVMSPVELVKVRLQLEDRVVLSAAAXXXXXXXXXXFALATGVVRTFGLSGLLSTGLGATMGRDVLPHGVWFASYEWCKQEFSAREGVKACDNGALSVAAQLASGGIAATTAWLVGYPFDVIKTRIQAAGMGKVPGGVVATAQHMASVDGMGVFYRGFGLKLARAVPMSMIGFFAYEVAAKQLRDMLASS 306          
BLAST of mRNA_Ecto-sp13_S_contig75.18688.1 vs. uniprot
Match: A0A836CMX5_9STRA (Carnitine/acylcarnitine translocase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMX5_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.850e-59
Identity = 134/306 (43.79%), Postives = 159/306 (51.96%), Query Frame = 1
Query:    7 QPLDSVLVRVQAGTAAGSSSLAAAIRDLLSSGSGARSLWKGATPMMWSVPAQNALLFAGYGAGLGWCSQGERQQDGDPSSLWHVFAGGCAGGFAQSFVMSPVELVKVRLQLQDRAVLSAAAAGTGSRGGGAFALATGV-----------------------VRTFGLSGLL--STGLGATMGRDVLPHGVWFASYEWCKQEFSAREGVKACDNGALSVGAQLASGGIAATTAWLVGYPFDVIKTRIQAAGMRKVPDGVVATARHMASVDGMGVFYRGFGLKLARAVPMSMIGFFAYEVAAKRLRDM 849
            QPLD +LVR QA  A    +LA       SS  G ++LWKG + MM +VPAQNALLFAGYGAGL W    +     +   LWHVF GGCAGG AQSF+ SPVEL+KVRL                                                     R+F L  +     GL AT+ RDVLPHGVWFASYE  K+  +          G L   AQ+A+G  AAT AW VGYP DV+KTR+QA G          T   M + +G+ VF+RG GLKLARA+PMS IGFFAYE  A  LR +
Sbjct:   26 QPLDCILVRRQANAAPARQALA----HSFSSAGGLKALWKGTSIMMGTVPAQNALLFAGYGAGLHWSGADKGDGTSEGGQLWHVFVGGCAGGLAQSFLASPVELLKVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSFALPSVAWAGQGLSATLWRDVLPHGVWFASYEAAKRALAGDAAA-----GPLDPAAQVAAGATAATAAWCVGYPADVVKTRMQAHG---ASGSFAETVARMHAAEGVRVFWRGLGLKLARAIPMSAIGFFAYEEVAAYLRAL 319          
BLAST of mRNA_Ecto-sp13_S_contig75.18688.1 vs. uniprot
Match: A0A7S0I9L0_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0I9L0_MICPS)

HSP 1 Score: 197 bits (500), Expect = 5.080e-58
Identity = 133/296 (44.93%), Postives = 166/296 (56.08%), Query Frame = 1
Query:    4 LQPLDSVLVRVQAGTAAGS--SSLAAAIRDLLSSGSGARSLWKGATPMMWSVPAQNALLFAGYGAGLGWCSQGERQQDGDP---SSLWHVFAGGCAGGFAQSFVMSPVELVKVRLQLQDRAVLSAAAAGTGSRGGGAFALATGVVRTFGLSGLLSTGLGATMGRDVLPHGVWFASYEWCKQEF---SAREGVKACDNGALS-VGAQLASGGIAATTAWLVGYPFDVIKTRIQAAGMRK-----VPDGVVATARHMASVDGMGV---FYRGFGLKLARAVPMSMIGFFAYEVAAKRL 840
            +QPLD+ L R+QA   A     S +AA+R +L+ G GAR+LW+GA PM   +PAQNALLFAGYG G  W S+G    D      SSL  VF GG  GG  QSFV+SP ELVK+R Q               S GG A    + +  T G +GL + GLGAT+ RD +PHG WFA+YEW K+        +G+ A  +G L+     L +G  AA  AW VGYP D++KTR+QA   R      +  G+  T   M    G  V   FYRGF LKL RAVP S + FFAYE A + L
Sbjct:   23 VQPLDTTLTRMQATRLAPGVDGSASAALRVVLAEG-GARALWRGAAPMTAVIPAQNALLFAGYGVGERWASRGGSSSDASSKTSSSLLPVFCGGVVGGVLQSFVVSPFELVKIRQQ---------------SAGGTATLAVSTLAGTLGRAGLATRGLGATLLRDGVPHGAWFAAYEWSKRRMIRDDENDGLSATTSGGLTDAWVPLCAGAFAAAVAWGVGYPADLVKTRVQAHAARSAAAATLAPGLAETCAAMLRESGGDVLRAFYRGFDLKLLRAVPASAVSFFAYEEARRWL 302          
BLAST of mRNA_Ecto-sp13_S_contig75.18688.1 vs. uniprot
Match: A0A8J5XL04_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XL04_DIALT)

HSP 1 Score: 187 bits (476), Expect = 2.300e-54
Identity = 135/300 (45.00%), Postives = 163/300 (54.33%), Query Frame = 1
Query:    7 QPLDSVLVRVQ-AGTAAGSSSLAAAIRDLLSSGSGARSLWKGATPMMWSVPAQNALLFAGYGAG----------------LGWCSQGERQQDGDPSSLWHVFAGGCAGGFAQSFVMSPVELVKVRLQLQDRAVLSAAAAGTGSRGGGAFALATGVVRTFGLSGLLSTGLGATMGRDVLPHGVWFASYEWCKQEFSAREGVKACDNGALSVGAQLASGGIAATTAWLVGYPFDVIKTRIQ--AAGMRKVPDGVVATARHMASVDG---MGVFYRGFGLKLARAVPMSMIGFFAYEVAAKRL 840
            QPLD+VL R+Q A  AA  +SLA  +R       G R+LW+GA+P+ W VP QNALLFAGYG G                                 L  +F GGCAGG  Q FV+SPVELVKV LQ          ++     G G  A A+ V  T G+  +   GL AT+ RD LPHGVWFASYEW K+E +AR+  +     A    A L+ G  AAT AW VGYP D++KTRIQ  A   R  P  V+A AR + +  G      FYRGFGLKLARAVPM+ + FFAYE A   L
Sbjct:   26 QPLDTVLTRLQQAPPAARPASLALQLRR----DGGLRALWRGASPLAWVVPVQNALLFAGYGMGERFXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLAPIFVGGCAGGVLQCFVVSPVELVKVHLQ----------SSSPKEAGAGLLAGASKVYATIGVPAIWR-GLSATLLRDGLPHGVWFASYEWGKRELAARDPDRVLPTAA----APLSCGAFAATVAWAVGYPADIVKTRIQSPAHAGRDAPS-VLAAARELLAESGGRPFAAFYRGFGLKLARAVPMNALSFFAYERAKAAL 305          
BLAST of mRNA_Ecto-sp13_S_contig75.18688.1 vs. uniprot
Match: A0A6U8KEQ0_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6U8KEQ0_EMIHU)

HSP 1 Score: 185 bits (470), Expect = 1.770e-53
Identity = 124/298 (41.61%), Postives = 161/298 (54.03%), Query Frame = 1
Query:    7 QPLDSVLVRVQAGTAAGSSSLAAAIRDLLS-SGSGARSLWKGATPMMWSVPAQNALLFAGYGAGLGWCSQGERQQDGDPSSLWHVFAGGCAGGFAQSFVMSPVELVKVRLQLQDRAVLSAAAAGTGSRGGGAFALATGVVRTFGLSG-------LLSTGLGATMGRDVLPHGVWFASYEWCKQEFSAREGVKA--------CDNGALSVGAQLASGGIAATTAWLVGYPFDVIKTRIQAAGMRKVPDGVVATARHMASVDGMGVFYRGFGLKLARAVPMSMIGFFAYE---VAAKRLR 843
            QP D  + R+QA T     +LA+ +R L+   G+   + W+G  P++   P  NAL+F GYG+G  +   G+      P+SL  VF GGC GGFAQSF+ SPVEL+KVRLQL +         G         A A  +V+    +G       LLS GL AT+ RDV+PHGVWFASYE  K   +    + A          +  LS G QLA+G  AA  AW VGYPFD++KTR QA+      +G +A  R +    G+   Y GFGLK+ RAVPMS IGF  YE      +RLR
Sbjct:   23 QPFDMAVTRMQATTHQPGPTLAS-LRSLMRLDGASLGAAWRGVGPLLLGTPFNNALIFVGYGSGKRFSETGDET----PNSLLPVFIGGCVGGFAQSFLASPVELIKVRLQLAEP--------GGXXXXXXXLAAAGALVKELAAAGHSHTLPPLLSQGLAATIARDVVPHGVWFASYEVAKTALAPPRPIAASAEAPDPQAPDPPLSTGRQLAAGASAAVAAWAVGYPFDIVKTRCQASSSS---EGFLAATRQLWREGGVAAMYSGFGLKMCRAVPMSAIGFLVYEHVYATCRRLR 304          
BLAST of mRNA_Ecto-sp13_S_contig75.18688.1 vs. uniprot
Match: C1E524_MICCC (Mitochondrial carrier family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E524_MICCC)

HSP 1 Score: 184 bits (468), Expect = 3.820e-53
Identity = 130/303 (42.90%), Postives = 164/303 (54.13%), Query Frame = 1
Query:    4 LQPLDSVLVRVQAGTAAGS--SSLAAAIRDLLSSGSGARSLWKGATPMMWSVPAQNALLFAGYGAGLGWCSQGERQQDGDPS-----SLWHVFAGGCAGGFAQSFVMSPVELVKVRLQLQDRAVLSAAAAGTGSRGGGAFALATGVVRTFGLSGLLSTGLGATMGRDVLPHGVWFASYEWCKQEF--SAREGVKACDNGALSVGAQ--LASGGIAATTAWLVGYPFDVIKTRIQA----------AGMRKVPDGVVATARHMASVDGMGV---FYRGFGLKLARAVPMSMIGFFAYEVAAKRL 840
            +QP+D+ L R+QA   A     S  AA+R +L+ G GAR+LW+GA PM   +PAQNALLFAGYG G  W S+ ++   G+P      SL  VF GG  GG  QSFV+SP ELVK+R Q    AV  A +   G+                G  GL + GLGAT+ RD +PHGVWFA+YEW K+    ++R+             A   L +G  AA  AW VGYP D++KTR+QA          A M +   G+  T   M    G  V   FYRGF LKL RAVP S + FFAYE A + L
Sbjct:   23 VQPVDTTLTRMQATRLAPGVDGSARAALRVVLAEG-GARALWRGAAPMTAVIPAQNALLFAGYGVGERWASRRDKDSGGNPDGSSRESLLPVFCGGVVGGVLQSFVVSPFELVKIRQQAAGGAVTLAVSTLAGN---------------LGRVGLCTRGLGATLLRDGVPHGVWFAAYEWSKRRMVQASRDXXXXXXXXXRRTDAAVPLCAGAFAAAVAWGVGYPADLVKTRVQAQAAXXXXXGGATMMRSAPGLAETCAAMLRESGGDVLRAFYRGFDLKLLRAVPASAVSFFAYEEARRWL 309          
BLAST of mRNA_Ecto-sp13_S_contig75.18688.1 vs. uniprot
Match: A0A448ZGK2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGK2_9STRA)

HSP 1 Score: 184 bits (467), Expect = 9.240e-53
Identity = 133/310 (42.90%), Postives = 175/310 (56.45%), Query Frame = 1
Query:    7 QPLDSVLVRVQAGTAAGSSSLAAAIRDLLSSGS------------GARSLWKGATPMMWSVPAQNALLFAGYGAGLGWCSQGERQQD-GDPSSLWHVFAGGCAGGFAQSFVMSPVELVKVRLQLQDRAVLSAAAAGTGSRGGGAFALATGVVRTF--GLSGLLSTGLGATMGRDVLPHGVWFASYEWCKQEF------SAREGVKACDNGA---------LSVGAQLASGGIAATTAWLVGYPFDVIKTRIQAA--GMRKVPDGVVATARHM---ASVDGMGVFYRGFGLKLARAVPMSMIGFFAYEVAA 831
            QPLD+VL R QAG    +  L  A++  +++ +            G RSLW+G++PM+ +VP QNALL  GYG G  + S+G R  D G   +L  VF GGCAGG  QSF+MSPVE +KV+ Q               S G  A A +  V+R F      L + GL AT+ RD +PHGVWFA+YE+CK         +A  G +    GA          +V   + SG +AATTAW VGYPFD+IKTRIQA+  G+R VP GV  T   +   A+ + +   YRGFGLKL R+VP SM+GFF YE+ +
Sbjct:   27 QPLDTVLTRFQAGRVLSAPGLEVAVQGGVTASAVRSSVRGLVGEFGLRSLWRGSSPMIGAVPVQNALLMGGYGFGKRY-SEGARGADTGACDALLPVFVGGCAGGVLQSFLMSPVEWIKVQQQTH------------ASSGAAATASSVSVLRRFLTHRHALWNRGLTATLLRDGIPHGVWFATYEFCKLRMLAGPAEAASGGTETPGAGAEDGPRSSLYKTVAVPVVSGAVAATTAWAVGYPFDIIKTRIQASADGVR-VPPGVWETGIKLVEEANGNLLRGLYRGFGLKLLRSVPASMVGFFTYELVS 322          
BLAST of mRNA_Ecto-sp13_S_contig75.18688.1 vs. uniprot
Match: B7GCN7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GCN7_PHATC)

HSP 1 Score: 181 bits (459), Expect = 4.600e-52
Identity = 130/296 (43.92%), Postives = 161/296 (54.39%), Query Frame = 1
Query:    7 QPLDSVLVRVQAGTAAGSSSLAA--------------AIRDLLSSGSGARSLWKGATPMMWSVPAQNALLFAGYGAGLGWCSQGERQQDGDPSSLWHVFAGGCAGGFAQSFVMSPVELVKVRLQLQDRAVLSAAAAGTGSRGGGAFALATGVVRTFGLSGLLSTGLGATMGRDVLPHGVWFASYEWCKQEFSAREGVKACDNGALSVGAQLASGGIAATTAWLVGYPFDVIKTRIQAAGMRKVPDGVVATARHMASVDGMGV--FYRGFGLKLARAVPMSMIGFFAYEVAAKRLRD 846
            QP+D+VL R+QAGT    SSL                A  DL  S +G ++LW+GA+PM+ +VP QNALL  GYG G  + +      D     L  +F GGC GG  QSF+MSPVEL+KV  Q++          GT  R  G      G V T         GL AT+ RD +PHGVWFA+YE  K       G         SV   LASG +AAT AW VGYP D+IKTRIQAAG  +   G+V TAR + +    GV   YRGFGLKL R++P SMIGF  YE   K+++D
Sbjct:   25 QPVDTVLTRLQAGTV---SSLVTGTTRAXXXXXXXRTATLDLTQS-AGFQALWRGASPMITAVPLQNALLMGGYGVGQAYSAGNLDSAD----RLAAIFVGGCTGGILQSFLMSPVELIKVSQQVR----------GTPLRDAG------GAVLTHWAQPAAWRGLYATLLRDGIPHGVWFATYEVAKDGLEETLGKD-------SVSVPLASGALAATAAWAVGYPADLIKTRIQAAGPTE-NHGIVETARAIMNEGNAGVAGLYRGFGLKLVRSIPASMIGFTVYEFVKKQVQD 288          
BLAST of mRNA_Ecto-sp13_S_contig75.18688.1 vs. uniprot
Match: K0TK08_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TK08_THAOC)

HSP 1 Score: 174 bits (441), Expect = 3.670e-49
Identity = 132/303 (43.56%), Postives = 159/303 (52.48%), Query Frame = 1
Query:    7 QPLDSVLVRVQAGTAAGSSS-------LAAAIRDL--LSSGSGARSLWKGATPMMWSVPAQNALLFAGYGAGLGWCSQ--GERQQDGDPSSLWHVFAGGCAGGFAQSFVMSP---------VELVKVRLQLQDRAVLSAAAAGTGSRGGGAFALATGVVRTFGLSGLLSTGLGATMGRDVLPHGVWFASYEWCKQEF----SAREGVKACDNGALSVGAQLASGGIAATTAWLVGYPFDVIKTRIQA-AGMRKVPDGVVATARHMASVDGMGVFYRGFGLKLARAVPMSMIGFFAYEVAAKRL 840
            QP+D+VL R+QA     S++       LAAA   L  + S  GA SLW+G++ M+ +VP QNALL  GYG G  W     GE +     S +  VF GGC GG  QSFVMSP         VELVKV  Q+   +  SA                T V R    +     GL ATM RD +PHGVWFASYE+ K       S+ EG + C  G   V   + SG  AATTAWLVGYP D+IKTRIQA +G R + D      R       +G+ YRG  LKL RA+P S IGF  YE AAK L
Sbjct:   23 QPIDTVLTRMQANAGMQSTTSVLKRMGLAAATTSLRGMVSNFGASSLWRGSSCMIGAVPFQNALLMTGYGWGKRWSDDFGGEDRA----SKMMAVFVGGCFGGVLQSFVMSPDVTSNSLNKVELVKVTQQVAGASASSAT---------------TNVARGLFSNAGAWRGLSATMLRDGIPHGVWFASYEYAKTSLALHNSSSEGSEECGKGETDVAIPMLSGAFAATTAWLVGYPADLIKTRIQAGSGYRGILDVTRELIRESGGRPILGL-YRGLTLKLCRAIPASAIGFLTYETAAKFL 305          
BLAST of mRNA_Ecto-sp13_S_contig75.18688.1 vs. uniprot
Match: A0A7S4AE61_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AE61_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.120e-48
Identity = 132/340 (38.82%), Postives = 169/340 (49.71%), Query Frame = 1
Query:    7 QPLDSVLVRVQAGTAAG-------------------SSSLAAAIRDLLSSGSGARSLWKGATPMMWSVPAQNALLFAGYGAGLGWCSQGERQQDGD--------------PSSLWHVFAGGCAGGFAQSFVMSPVELVKVRLQLQDRAVLSAAAAGTGSRGGGAFALATGVVRTF--GLSGLLSTGLGATMGRDVLPHGVWFASYEWCKQEF-----------------SAREGVKACDNGALSVGAQLASGGIAATTAWLVGYPFDVIKTRIQAAGMRKVPDGVVATARHMASVDGMGVF---YRGFGLKLARAVPMSMIGFFAYEVAAKRLRDMIATS 861
            QPLD+VL R QAG  A                    +S++   +R L+    G RSLW+G++PM+ +VP QNALL  GYG G  + S+ +                      SL  VF GGC GG  QSF MSPVE +KV  Q          A GT +   GA + ++ V+R F      L + GL AT+ RD +PHGVWFASYE+CK +                         +  +   +V   + SG  AATTAW VGYPFDVIKTRIQA+    VP GV  T RH+       V    YRGFGLKL R+VP SM+GFF YE  +  +  + AT+
Sbjct:   65 QPLDTVLTRFQAGQGAXXXXXXXXXXXXXXXXGIIDASAVRGNLRGLVHE-FGPRSLWRGSSPMIGAVPIQNALLMGGYGFGKRYASENDASNGNGIXXXXXXXXXXXXXXGSLLPVFVGGCVGGVLQSFFMSPVEWIKVNQQT---------ALGTTNGNAGASSSSSSVLRKFVQHRGALWNRGLAATLLRDGIPHGVWFASYEFCKIQMLLGTDTGDGTTXXXXXXXXXNSTPSSSSFYKTVTVPVVSGAFAATTAWSVGYPFDVIKTRIQASA-HTVP-GVYETGRHLVREANGSVLRGLYRGFGLKLVRSVPASMVGFFCYEFVSGSIGSVAATN 392          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75.18688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ34_ECTSI3.000e-17390.24Carnitine/acylcarnitine translocase n=2 Tax=Ectoca... [more]
A0A836CMX5_9STRA1.850e-5943.79Carnitine/acylcarnitine translocase n=1 Tax=Tribon... [more]
A0A7S0I9L0_MICPS5.080e-5844.93Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A8J5XL04_DIALT2.300e-5445.00Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A6U8KEQ0_EMIHU1.770e-5341.61Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
C1E524_MICCC3.820e-5342.90Mitochondrial carrier family n=1 Tax=Micromonas co... [more]
A0A448ZGK2_9STRA9.240e-5342.90Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B7GCN7_PHATC4.600e-5243.92Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
K0TK08_THAOC3.670e-4943.56Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4AE61_9STRA1.120e-4838.82Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75contigEcto-sp13_S_contig75:39249..41600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score493.4
Seed ortholog evalue7e-137
Seed eggNOG ortholog2880.D7FZ34
Model size864
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Belongs to the mitochondrial carrier (TC 2.A.29) family
EggNOG OGsKOG0762@1,KOG0762@2759
Ec32 ortholog descriptioncarnitine/acylcarnitine translocase
Ec32 orthologEc-17_004320.1
Cds size864
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464019.0342472-CDS-Ecto-sp13_S_contig75:39248..394751681464019.0342472-CDS-Ecto-sp13_S_contig75:39248..39475Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75 39249..39475 -
1681464019.0478206-CDS-Ecto-sp13_S_contig75:40283..406291681464019.0478206-CDS-Ecto-sp13_S_contig75:40283..40629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75 40284..40629 -
1681464019.0585923-CDS-Ecto-sp13_S_contig75:41309..416001681464019.0585923-CDS-Ecto-sp13_S_contig75:41309..41600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75 41310..41600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75.18688.1prot_Ecto-sp13_S_contig75.18688.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75 39249..41600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75.18688.1

>prot_Ecto-sp13_S_contig75.18688.1 ID=prot_Ecto-sp13_S_contig75.18688.1|Name=mRNA_Ecto-sp13_S_contig75.18688.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=288bp
MLQPLDSVLVRVQAGTAAGSSSLAAAIRDLLSSGSGARSLWKGATPMMWS
VPAQNALLFAGYGAGLGWCSQGERQQDGDPSSLWHVFAGGCAGGFAQSFV
MSPVELVKVRLQLQDRAVLSAAAAGTGSRGGGAFALATGVVRTFGLSGLL
STGLGATMGRDVLPHGVWFASYEWCKQEFSAREGVKACDNGALSVGAQLA
SGGIAATTAWLVGYPFDVIKTRIQAAGMRKVPDGVVATARHMASVDGMGV
FYRGFGLKLARAVPMSMIGFFAYEVAAKRLRDMIATS*
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mRNA from alignment at Ecto-sp13_S_contig75:39249..41600-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75.18688.1 ID=mRNA_Ecto-sp13_S_contig75.18688.1|Name=mRNA_Ecto-sp13_S_contig75.18688.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2352bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75:39249..41600- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCAGCCCCTGGACAGCGTCCTAGTCCGGGTGCAGGCCGGAACAGC AGCAGGCAGCAGCTCTCTCGCAGCCGCGATCAGGGACCTCCTTTCCTCTG GCAGTGGCGCCCGATCGCTCTGGAAGGGGGCGACCCCGATGATGTGGAGT GTGCCCGCACAGAACGCCCTCCTGTTCGCGGGATACGGGGCCGGTCTGGG GTGGTGTTCGCAGGGGGAGCGACAGCAGGACGGGGACCCATCTTCCTTGT GGCATGTGTTTGCGGGGGGTTGCGCCGGGGGATTCGCGCAGGTGAGTTAA CGTTTGTTCGCGCGAGCTCTTTGCATCGTGTCTCTCTCTTCTTCCTCTTC GGGGAGTGCTCTCTCTGTCTTGATCCCGGTCCTTACCTCCCTGCCTTGCT GTCTTTGGTTTTGTGTGGACGCTTGCGCAGTGACTTACGTGTTCTTTATG GCCCTCCTGGTTGGCTGTAGGTTTGATAGGGACTTGGCGAGAGAGGGCCT GCATTCCGAAGACCTTCCCTGCGCGACAGAGACAGACGAGTTGTGCACGC AAGTGAAACGAGGCAGCAAGAGCAGTGCCAATGATGATAACCAACAACAA GGCAACCCTTCTTGCAGTGGTACGTTTGCTTCCAGAAGATAGCTTAAAAT CTAGACTAGAACGTGTTGCGAGGGTGCCCGGCCCGCGACTTCTTCGCGTC GAACGTCCAAGGCGGTATGGATCCACTGGTAAACCCAACCCACTTGGCCA GGAACACAGTCTCAACCTTGGTTTGGTGGTCGGTGTCTTGTAGAAGGGGT TTGGGGACCAACGACTGGGTGCGCTCATGCGAGACAGCGGTAACATCGAT CCCGTGGCGATACGACCGCGGTACTCAACTCACCCTAGTCGAGAAGCTAC ACCTCGAAAGCCACGGCTCCCTTCATCCCAAAACCTGCCATTTGCCTTCC TACTCGTTTGTCTTCGCGCAGAGCTTCGTCATGAGTCCTGTCGAACTTGT CAAGGTGCGGCTGCAGCTACAGGACCGCGCCGTCCTCAGCGCGGCCGCCG CCGGCACTGGCAGCAGGGGCGGAGGCGCTTTCGCCCTGGCGACGGGGGTA GTGCGCACCTTCGGGCTATCAGGCTTACTCTCGACGGGTCTCGGGGCAAC GATGGGCAGAGACGTCCTCCCACACGGGGTGTGGTTTGCGTCTTACGAGT GGTGTAAGCAAGAGTTTTCCGCAAGAGAAGGCGTCAAGGCCTGCGACAAC GGCGCTCTTAGCGTCGGGGCTCAGCTGGCATCGGGGGGTATCGCAGCGAC GACCGCTTGGCTCGTCGGTGAGTGGATGGGCACAGCCAAAACACTTCCCA TCCGTAACCCTCGGTCCCTCCACTGCTGTCTGGCTCCGTCTGAGGTCGCC CGATGTTGTGGCTGTTTGAAGACCGCTGTCGATTGAACCACTTGATTCGT CAGCCCTCACTGGCTCTCCTAATGGGCCCTGCTGCTGCTCCCTCTTCGCA CCGCAACAGCATGTTGGTGCATCTCTATTTGCTCGTTTTTTGTCTCACGT TTTGCCGAACCGGGTTCGGTGCAGCCTCAGCGTTCTACTCTTTGATTGCC CCGAGCTACGTGTTGTATGTGGCCTTGCAGGGTACCAAAAGTTTTGGCCT CCGCCCGACACCCCCACGTTCCGCGCTGACTCTGCCAGCAGGAACACAAG GAACTTCGGCCACAAGCAACAGTTGCTGTTCAATACAGCGGATGTGTACA AGACGCAAACTGATCAACTCCAAGTATTCTCTGATTGCGATAGGCGAAGC CAAAACCATAGTCTGATCGACTCCAAGAAGCCGTCAGCTTTCGTTTGACG ACCAGACAACACTACCACGTTTTGTACCTGTCCACGCAATCGATCGTTTT CACAACCCTTTCCTCCAGACTGCAGACAGATGTTTGCGCAACTTGTTCAA CGACTAGTTTGTGAACACGGTAGTTATGCGCGCCACGCATGCGAGAAGAA CAATCCTCGTGGTCGATGGCGTGGGTGAGACATCGAAAACGGATTAAATT GAGCCCCCACCCCACCTTTCTCTGTCTCTCACTTCTATCCCGCATCCTGG CCCGCTCTTCCATTTGGTTTTGCAGGGTACCCGTTTGACGTCATCAAGAC TAGGATACAAGCCGCCGGCATGAGAAAGGTTCCAGATGGGGTTGTGGCCA CGGCGCGACACATGGCTAGCGTAGACGGGATGGGGGTCTTCTATCGAGGC TTCGGCCTCAAGCTTGCCCGAGCTGTGCCGATGTCGATGATCGGCTTCTT CGCCTACGAGGTCGCTGCCAAACGGCTCCGAGACATGATCGCCACCTCGT GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75:39249..41600-

>mRNA_Ecto-sp13_S_contig75.18688.1 ID=mRNA_Ecto-sp13_S_contig75.18688.1|Name=mRNA_Ecto-sp13_S_contig75.18688.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75:39249..41600- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCAGCCCCTGGACAGCGTCCTAGTCCGGGTGCAGGCCGGAACAGC
AGCAGGCAGCAGCTCTCTCGCAGCCGCGATCAGGGACCTCCTTTCCTCTG
GCAGTGGCGCCCGATCGCTCTGGAAGGGGGCGACCCCGATGATGTGGAGT
GTGCCCGCACAGAACGCCCTCCTGTTCGCGGGATACGGGGCCGGTCTGGG
GTGGTGTTCGCAGGGGGAGCGACAGCAGGACGGGGACCCATCTTCCTTGT
GGCATGTGTTTGCGGGGGGTTGCGCCGGGGGATTCGCGCAGAGCTTCGTC
ATGAGTCCTGTCGAACTTGTCAAGGTGCGGCTGCAGCTACAGGACCGCGC
CGTCCTCAGCGCGGCCGCCGCCGGCACTGGCAGCAGGGGCGGAGGCGCTT
TCGCCCTGGCGACGGGGGTAGTGCGCACCTTCGGGCTATCAGGCTTACTC
TCGACGGGTCTCGGGGCAACGATGGGCAGAGACGTCCTCCCACACGGGGT
GTGGTTTGCGTCTTACGAGTGGTGTAAGCAAGAGTTTTCCGCAAGAGAAG
GCGTCAAGGCCTGCGACAACGGCGCTCTTAGCGTCGGGGCTCAGCTGGCA
TCGGGGGGTATCGCAGCGACGACCGCTTGGCTCGTCGGGTACCCGTTTGA
CGTCATCAAGACTAGGATACAAGCCGCCGGCATGAGAAAGGTTCCAGATG
GGGTTGTGGCCACGGCGCGACACATGGCTAGCGTAGACGGGATGGGGGTC
TTCTATCGAGGCTTCGGCCTCAAGCTTGCCCGAGCTGTGCCGATGTCGAT
GATCGGCTTCTTCGCCTACGAGGTCGCTGCCAAACGGCTCCGAGACATGA
TCGCCACCTCGTGA
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