mRNA_Ecto-sp13_S_contig7499.18683.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7499.18683.1
Unique NamemRNA_Ecto-sp13_S_contig7499.18683.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7499.18683.1 vs. uniprot
Match: D7FYA5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYA5_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 9.000e-86
Identity = 206/268 (76.87%), Postives = 210/268 (78.36%), Query Frame = 1 
Query:    1 MGNLMSRKKKRERDHVTDQDRAVLDLKNSRDRLTRYQKKVRGFLVVDNFSSCLFSANVFSFPNHCLFFVVRLKQDQADKASSQLLSVHQMMDTIDWETQQLQVFKALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEEEISKAIGGSWTDANEEDLLAELAELESEAAPESVPATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVXXXXXXXXXXXXXXXXXXXXLEELLPXXXXXXXXXXXXVTDTAEPQQEEERPMLVPA 804
            MGNLMSRKKKRERDHVTDQDRAVLDLKNSRDRLTRYQKK+          +              L  + +LKQDQADKASSQLLSVHQMMDTIDWETQQLQVF ALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEEEISKAIGGSWTDANEEDLLAELAELESEAAPE VPATVXXXXXXXXXXXXXXXXXXXXXX        AVXXXXXXXXX           LEELLP     XXXXXXX    AEPQQEEERP LVPA
Sbjct:    1 MGNLMSRKKKRERDHVTDQDRAVLDLKNSRDRLTRYQKKLDLECAKLQAQAAAMVKEKRKDRALLLLKIKKLKQDQADKASSQLLSVHQMMDTIDWETQQLQVFNALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEEEISKAIGGSWTDANEEDLLAELAELESEAAPEPVPATVXXXXXXXXXXXXXXXXXXXXXX--------AVXXXXXXXXXSEETAAQGASSLEELLPEAPTEXXXXXXXXXXAAEPQQEEERPTLVPA 260
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BLAST of mRNA_Ecto-sp13_S_contig7499.18683.1 vs. uniprot
Match: A0A836CK96_9STRA (Snf7-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK96_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.390e-31
Identity = 72/168 (42.86%), Postives = 104/168 (61.90%), Query Frame = 1 
Query:   25 KKRERDHVTDQDRAVLDLKNSRDRLTRYQKKVRGFLVVDNFSSCLFSANVFSFPNHCLFFVVRLKQDQADKASSQLLSVHQMMDTIDWETQQLQVFKALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEEEISKAIGGSWTDANEEDLLAELAELESEAAPESVP 528
            K + R HV+D D+AVLDLK +RDRL RYQKK+ G   +    +              L  + R K +QA KA +QL +V ++++T++WE  Q QV  AL EG  ALN LHE MP++ VE+LMADT E++  E++++  I G+W+  NE++LL E   L+ E A E+ P
Sbjct:   16 KVKNRPHVSDHDKAVLDLKVARDRLKRYQKKLDGEAQMLTTQAQALVKEGRKDRALVLLKIKRFKAEQASKADAQLFTVTELLETVEWEGHQAQVLAALSEGTKALNSLHEAMPIEDVEQLMADTQEALEYEQQVNSIIAGAWSPENEDELLEEFEALQKEMAAEAAP 183
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BLAST of mRNA_Ecto-sp13_S_contig7499.18683.1 vs. uniprot
Match: U9TY63_RHIID (Snf7-domain-containing protein n=6 Tax=Rhizophagus TaxID=1129544 RepID=U9TY63_RHIID)

HSP 1 Score: 106 bits (265), Expect = 1.830e-24
Identity = 70/171 (40.94%), Postives = 110/171 (64.33%), Query Frame = 1 
Query:    1 MGNLMSRKKKRERDHVTDQDRAVLDLKNSRDRLTRYQKKVRGFLVVDNFSSCLFSANVFSFPNHCLFFVVRLK-QDQA-DKASSQLLSVHQMMDTIDWETQQLQVFKALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEEEISKAIGGSWTDANEEDLLAELAELESE 507
            MGN  SR        +T QDRA+LDLK  RD+L +YQKK++  LV D  +     A + +     L  + + K Q+Q   K+ +QLL++ Q+  TI++   +  VF+ LK+GN+ LN++H+E P++KVE+LM DTA++IA + EIS+A+ G  T  +EE++LAEL ++ +E
Sbjct:    1 MGNKNSR--------ITSQDRAILDLKVQRDKLKQYQKKLQ--LVADRETQIAKEALLKNNKRGALLALKKKKYQEQLLSKSDAQLLNLEQLTQTIEFTLVEKDVFEGLKQGNLILNEIHKETPIEKVEKLMEDTADAIAYQNEISEALSGKLTSEDEEEILAELDQIVNE 161
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BLAST of mRNA_Ecto-sp13_S_contig7499.18683.1 vs. uniprot
Match: H3H1K0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1K0_PHYRM)

HSP 1 Score: 106 bits (264), Expect = 5.080e-24
Identity = 68/157 (43.31%), Postives = 100/157 (63.69%), Query Frame = 1 
Query:   37 RDHVTDQDRAVLDLKNSRDRLTRYQKK--VRGFLVVDNFSSCLFSANVFSFPNHCLFFVVRLKQDQADKASSQLLSVHQMMDTIDWETQQLQVFKALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEEEISKAIGGSWTDANEEDLLAELAELE 501
            R  +T +D+A+LDLKN+RDRL +YQ +  +    + D+ +  L  A         L  + + K+ Q  +A   L+ V  M+DT++WETQQLQVF+ LK GN  LN +H+EM ++ VEELM +T E+ A   EIS+ IGGS T  +E+ +L+ELAE+E
Sbjct:   28 RAQITSKDKAILDLKNARDRLKKYQARLDIEANQLHDS-AKRLLQAGKRDRAKLALK-LKKYKEQQMHQADEHLIQVLGMLDTVEWETQQLQVFEGLKAGNSILNAIHKEMTVEAVEELMMETEEAQATANEISRVIGGSLTVEDEDAVLSELAEIE 182
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BLAST of mRNA_Ecto-sp13_S_contig7499.18683.1 vs. uniprot
Match: A0A1V9ZMW9_9STRA (Hydroxymethylglutaryl-CoA lyase, mitochondrial n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZMW9_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.610e-23
Identity = 72/189 (38.10%), Postives = 118/189 (62.43%), Query Frame = 1 
Query:    1 MGNLMSRKKKRERD---------------HVTDQDRAVLDLKNSRDRLTRYQKKV-RGFLVVDNFSSCLFSANVFSFPNHCLFFVVRLKQDQADKASSQLLSVHQMMDTIDWETQQLQVFKALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEEEISKAIGGSWTDANEEDLLAELAELESEAAPE 519
            MG L+S+KK+   D                V+D+D+AVL+LK SRDRL +YQK++ +    + N +  L +         CL  + + K  Q ++A + L++VH M+D+++WE+QQLQ+F+ LK GN  L+ +H+EM ++ VE+LM +T E+ A  +EIS+ +GG+ +  +E+ +LAELAE+E+  A E
Sbjct:  658 MGGLLSKKKESPNDVLAARRAANVAKAKNQVSDKDKAVLELKASRDRLKKYQKQLEKDSEALQNKARELIANKHKDRALLCLK-MRKFKLQQLEQADNHLMNVHTMIDSVEWESQQLQIFQGLKAGNAVLDAIHKEMTVEAVEDLMLETQEAQAHADEISRILGGALSTQDEDAVLAELAEIEAAEAAE 845
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BLAST of mRNA_Ecto-sp13_S_contig7499.18683.1 vs. uniprot
Match: A0A4D9D5S7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5S7_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.620e-23
Identity = 76/187 (40.64%), Postives = 116/187 (62.03%), Query Frame = 1 
Query:    1 MGNLMSR-------KKKRERDHVTDQDRAVLDLKNSRDRLTRYQKKVRGFLV-VDNFSSCLFSANVFSFPNHCLFFVV--RLKQDQADKASSQLLSVHQMMDTIDWETQQLQVFKALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEEEISKAIGGSWTDANEEDLLAELAELESEA-APESVP 528
            MG L SR       K  ++   +TD D+AVLDLK ++DRL RYQ K+    + +   +  L +A      +  L  +   RL++D+  KA+ QLL+V Q++  I+WE +QLQVF ALK GN AL  +H+ + L++V++LMADTA+SIA E+EIS+ +  + +   EE++L E  EL++   APE+ P
Sbjct:    1 MGGLFSRHGRHHGGKSPKKPVQITDHDKAVLDLKVAKDRLKRYQMKMHSETMRLTEKAKELVTAGR---KDRALLVLKMRRLREDEQAKAAGQLLNVEQLITQIEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQEISRLLSNNLSAGAEEEVLREFDELQALIEAPENTP 184
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BLAST of mRNA_Ecto-sp13_S_contig7499.18683.1 vs. uniprot
Match: A0A5D6XUA9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUA9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.780e-23
Identity = 65/155 (41.94%), Postives = 97/155 (62.58%), Query Frame = 1 
Query:   46 VTDQDRAVLDLKNSRDRLTRYQKK--VRGFLVVDNFSSCLFSANVFSFPNHCLFFVVRLKQDQADKASSQLLSVHQMMDTIDWETQQLQVFKALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEEEISKAIGGSWTDANEEDLLAELAELES 504
            VT +D+A+LDLKN+RDRL +YQ +  V    + ++    L +             V + K+ Q  +A   LL+V +M+DT++WETQQL+VF+ LK GN  LN +H+EM ++ VE LM +T E+     EIS+ IGGS T  +E+ +L ELAE+E+
Sbjct:   32 VTSKDKAILDLKNARDRLRKYQARLDVEAQQLHESAKKLLLAEK--RDRAKLALKVKKFKEQQMKQADEHLLTVLEMLDTVEWETQQLKVFEGLKAGNSLLNAIHQEMSVEAVENLMLETEEAQETANEISRLIGGSLTLEDEDAVLLELAEIEA 184
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BLAST of mRNA_Ecto-sp13_S_contig7499.18683.1 vs. uniprot
Match: A0A067CN09_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CN09_SAPPC)

HSP 1 Score: 103 bits (258), Expect = 2.900e-23
Identity = 63/162 (38.89%), Postives = 107/162 (66.05%), Query Frame = 1 
Query:   46 VTDQDRAVLDLKNSRDRLTRYQKKVR-GFLVVDNFSSCLFSANVFSFPNHCLFFVVRLKQDQADKASSQLLSVHQMMDTIDWETQQLQVFKALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEEEISKAIGGSWTDANEEDLLAELAELESEAAPESVP 528
            V+ +D+A+L+LK SRDRL +YQK +      +++ +  L +         CL  + + K  Q ++A + LL+VHQM+ +++WE+QQLQ+F+ LK GN  L+ +H+EM ++ VE+LM +T E+ A  +EIS+ +GG+ +  +E+ +LAELAE+E+ A    +P
Sbjct:   31 VSSKDKAMLELKASRDRLKKYQKALEVESATLESKARQLLAKKQKDRAMLCLK-MRKFKLQQIEQADTHLLNVHQMIGSVEWESQQLQIFEGLKAGNSVLDAIHKEMTIEAVEDLMLETQEAQAHADEISRILGGALSTQDEDAVLAELAEIEAAAFEAQLP 191
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BLAST of mRNA_Ecto-sp13_S_contig7499.18683.1 vs. uniprot
Match: A0A3M6VKN6_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKN6_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.310e-23
Identity = 65/157 (41.40%), Postives = 97/157 (61.78%), Query Frame = 1 
Query:   37 RDHVTDQDRAVLDLKNSRDRLTRYQKK--VRGFLVVDNFSSCLFSANVFSFPNHCLFFVVRLKQDQADKASSQLLSVHQMMDTIDWETQQLQVFKALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEEEISKAIGGSWTDANEEDLLAELAELE 501
            R  +T +D+A LDLKN+RDRL +YQ +  +    + ++    L +             + + K+ Q  +A   L+ V  M+DT++WETQQLQVF+ LK GN  LN +H+EM ++ VEELM +T E+ A   EIS+ IGGS T  +E+ +L+ELAE+E
Sbjct:   29 RAQITSKDKATLDLKNARDRLKKYQTRLDIEANQLYESAKKLLQAGK--RDRAKLALKLKKYKEQQMHQADEHLIQVLGMLDTMEWETQQLQVFEGLKAGNSILNAIHKEMTVEAVEELMLETEEAQATANEISRIIGGSLTVEDEDAVLSELAEIE 183
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BLAST of mRNA_Ecto-sp13_S_contig7499.18683.1 vs. uniprot
Match: A0A0P1AN92_PLAHL (Hydroxymethylglutaryl-mitochondrial n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AN92_PLAHL)

HSP 1 Score: 103 bits (256), Expect = 7.110e-23
Identity = 66/157 (42.04%), Postives = 101/157 (64.33%), Query Frame = 1 
Query:   37 RDHVTDQDRAVLDLKNSRDRLTRYQKK--VRGFLVVDNFSSCLFSANVFSFPNHCLFFVVRLKQDQADKASSQLLSVHQMMDTIDWETQQLQVFKALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEEEISKAIGGSWTDANEEDLLAELAELE 501
            R  +T +D+AVLDLKN+RDRL +YQ +  +    + D+ +  L  A+        L  + + K+ Q  +A   L+ V  M+DT++WETQQLQVF+ LK  N+ LN +H+EM ++ VEELM +TAE+ A   EI + IGG+ +  +E+ +L+ELAE+E
Sbjct:   27 RAQITSKDKAVLDLKNARDRLRKYQARLDIEANQLHDS-AKRLLQADKRDRAKLALK-LKKYKEQQMHQADEHLIQVLGMLDTVEWETQQLQVFEGLKASNLILNAIHKEMTVEAVEELMLETAEAQATANEIGRIIGGNLSVEDEDAVLSELAEIE 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7499.18683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYA5_ECTSI9.000e-8676.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CK96_9STRA3.390e-3142.86Snf7-domain-containing protein (Fragment) n=1 Tax=... [more]
U9TY63_RHIID1.830e-2440.94Snf7-domain-containing protein n=6 Tax=Rhizophagus... [more]
H3H1K0_PHYRM5.080e-2443.31Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A1V9ZMW9_9STRA1.610e-2338.10Hydroxymethylglutaryl-CoA lyase, mitochondrial n=1... [more]
A0A4D9D5S7_9STRA1.620e-2340.64Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A5D6XUA9_9STRA2.780e-2341.94Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A067CN09_SAPPC2.900e-2338.89Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A3M6VKN6_9STRA5.310e-2341.40Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A0P1AN92_PLAHL7.110e-2342.04Hydroxymethylglutaryl-mitochondrial n=1 Tax=Plasmo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7499contigEcto-sp13_S_contig7499:2221..7015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score270.4
Seed ortholog evalue9.1e-70
Seed eggNOG ortholog2880.D7FYA5
Preferred nameCHMP6
Model size807
KEGG rclassRC00502,RC00503,RC01118,RC01946
KEGG koko:K01640,ko:K07204,ko:K08675,ko:K12195,ko:K16302
KEGG TC9.A.40.3
KEGG ReactionR01360,R08090
KEGG Pathwayko00072,ko00280,ko00281,ko00650,ko01100,ko04136,ko04138,ko04140,ko04144,ko04146,ko04150,ko04151,ko04152,ko04211,ko04213,ko04217,ko04714,ko04910,ko05206,map00072,map00280,map00281,map00650,map01100,map04136,map04138,map04140,map04144,map04146,map04150,map04151,map04152,map04211,map04213,map04217,map04714,map04910,map05206
KEGG ModuleM00036,M00088,M00412
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000815,GO:0000819,GO:0000920,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005768,GO:0005770,GO:0005829,GO:0005886,GO:0006469,GO:0006508,GO:0006511,GO:0006515,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006900,GO:0006914,GO:0006996,GO:0006997,GO:0007005,GO:0007032,GO:0007034,GO:0007049,GO:0007059,GO:0007080,GO:0007175,GO:0007176,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008593,GO:0009056,GO:0009057,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010256,GO:0010469,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019058,GO:0019068,GO:0019220,GO:0019222,GO:0019538,GO:0019941,GO:0022402,GO:0022607,GO:0023051,GO:0023057,GO:0030163,GO:0031090,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031410,GO:0031974,GO:0031982,GO:0032268,GO:0032269,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0033365,GO:0033673,GO:0034613,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0042058,GO:0042059,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042623,GO:0042886,GO:0043086,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043328,GO:0043549,GO:0043632,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045324,GO:0045859,GO:0045936,GO:0046618,GO:0046755,GO:0046907,GO:0047485,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050000,GO:0050730,GO:0050732,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051338,GO:0051348,GO:0051503,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0060255,GO:0061024,GO:0061097,GO:0061099,GO:0061919,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070676,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:0140096,GO:1901184,GO:1901185,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1903047,GO:1904669,GO:1904895,GO:1904902,GO:2000272
Exons4
EggNOG free text desc.vacuolar transport
EggNOG OGsKOG2910@1,KOG2910@2759
Ec32 ortholog descriptionSnf7 family
Ec32 orthologEc-24_003200.1
EC3.4.21.53,4.1.3.4
Cds size807
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03029,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464018.447725-CDS-Ecto-sp13_S_contig7499:2220..26041681464018.447725-CDS-Ecto-sp13_S_contig7499:2220..2604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7499 2221..2604 -
1681464018.463658-CDS-Ecto-sp13_S_contig7499:3625..37781681464018.463658-CDS-Ecto-sp13_S_contig7499:3625..3778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7499 3626..3778 -
1681464018.47436-CDS-Ecto-sp13_S_contig7499:4130..42751681464018.47436-CDS-Ecto-sp13_S_contig7499:4130..4275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7499 4131..4275 -
1681464018.4836814-CDS-Ecto-sp13_S_contig7499:6890..70151681464018.4836814-CDS-Ecto-sp13_S_contig7499:6890..7015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7499 6891..7015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7499.18683.1prot_Ecto-sp13_S_contig7499.18683.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7499 2221..7015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7499.18683.1

>prot_Ecto-sp13_S_contig7499.18683.1 ID=prot_Ecto-sp13_S_contig7499.18683.1|Name=mRNA_Ecto-sp13_S_contig7499.18683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp
MGNLMSRKKKRERDHVTDQDRAVLDLKNSRDRLTRYQKKVRGFLVVDNFS
SCLFSANVFSFPNHCLFFVVRLKQDQADKASSQLLSVHQMMDTIDWETQQ
LQVFKALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEEEISKAIGGS
WTDANEEDLLAELAELESEAAPESVPATVPEPVPATAPEPVPATASEPVP
ATASEPVPAAVPAAAEASKPSEEPAAQEASSLEELLPEAPTEAPVVVPAV
TDTAEPQQEEERPMLVPA*
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mRNA from alignment at Ecto-sp13_S_contig7499:2221..7015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7499.18683.1 ID=mRNA_Ecto-sp13_S_contig7499.18683.1|Name=mRNA_Ecto-sp13_S_contig7499.18683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4795bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7499:2221..7015- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAACCTCATGTCCAGGAAGAAGAAGAGGGAGAGAGATCATGTTAC
CGACCAGGATAGAGCGGTCCTTGATCTCAAGAACTCTCGCGATCGGCTGA
CGCGTTACCAGAAGAAGGTAAGAGGGTAGACAGCACCTGCACACGGTCTG
CAGTCTACAGGGTAGATGAGAACGCACACGCAACGAACTTTGCTGGCCGA
CTTGTTTGTATTCACCGCAGTAGATGACAGGTCACATATAAGAGCACCCA
CCTGCCTAATGTAACAAGTCTTTTTCGTTGAGAACTGCGTCTCAGTTCAC
ACAAATCTCGATTCACGCGGTCACGCCCCCGCGGTACAGCTGCAACCCCG
TAGAAAATGCCAGGAAAAGTGCAGTCTGTGAGCGATTAAACCGACGGCTG
ATGTTATTTTTCTAGTCCATCAAAAGACCGGATAGTGGGAACCACACATG
GGGCGTTAGCGCTGTGACTACTACACCCAGTGAAACTAAGTGGCATCAGT
TGCTGGGAGACTGGTTCCAAACAAAATCCTCCTGAGTAGTGCACCTTGGG
GCAAGTTTGACCTGTGGATACTTTTTGTTCGTATCCTGTTCATAAGTGCT
GAGCATTAACCGGTAACCGGTACACTGGGAGCGATAAATGCTTGCAGTGG
CGAGCATGTTGTCGCCGGTAGTGTTGTTGTATCTTCGCGTAGGCGTTTTG
CGGTGGAATAGCGGAAGAATGCGCTGTTGTTTTCTTCGCACGAGGGCTTG
TATCAAGCCTCTAGACAAACAAAGAACAGGGAACTCGGAATTCCCTGCTG
TTCCCTGTGTCATGTCGTTGAGTCAAAACCGCACCACATGCAGCAGTACT
CAGGCATGGAACACGAAAACACTTGAGCGGTGCGTGCGGCAGGCAGGTAC
TCGGAGGCAACAGGCACAGCCAAAAGGGGCAGAAAGAGGAACGGTGTAGG
TTTCGAAGCTGTTGACCAGCGACCATCATCTGCATGTGCTGAGTATCAGT
TACAACAGCAGGCGGTGCTCGTCGTGCAATCCGCTCCCTCGAGAGTGCCC
TGGAAGAGTTGATTCTTGCGGTTGCGGTCAACAGCAATTTGTCGTCTTCT
TTGGTACTCCTTCTTGCCCAATACAACAGCACGAGAGCATCCGCTGCCTT
TTTTGTGAGAAACCTGGTGATTGTGGCAAGGCATGTATCGCGCGAACCGG
GAAGGAAGGCACCTGTGGCAACGACGTATGCCCGAGTTGATCACGCATAT
CCCACGATGTTGCCACCGACGAGTCCGTGTTCCACGTTCCACATGGTCCA
TTGGGCTATTCAGTTCATGTGCGGTGTATGCAAAAAAAAGGAGGAACCTA
TGGGTGGCGAGATTTTTTCCAGGGACGATCCCAGGAACATTATTTGCTGT
GGTAGGTCAATCAGAGAATAATTCCGAGTCCCGTGTCCCCGGTTCTCTTT
GTTTCAGGCGGGGTTAGTGCACGCCCTGAGCANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGTGCTGTTTGATGGCGCGCATGCACAACACACACACATTGGTGGTTT
CATGGGTTCGCAGGCGGGCCGGCTTGAAGCTTTGGTGCATGTAGATATCT
CCCGAAAGGTTGGATACAGGGGTTATTTTTTGGGCTTTCTGGGCTTGACT
CATTCTTTCTTTGTTTTTTTTTGCCCCCTATGGGACCTTGATTGTTGCCC
GGTTAGCCTGGCGCCTTTTCGTTGGCCGGCCAGTATGCGCGGTCGATGCC
AATTTATGAGCCAGGTGCACACTTCTCCTCTTGCGCACGCATCTCTTGCT
GTTACTGTTTGTGGGATCAATTTCTCTCGAATGCTCTGCCGCGTGCTTCC
TGTGTTTGCCCGGGGACCCTGCGGCTGCGTCCCCTGGTCTCACCGCCGGG
GCGCCCCCTTTCTTATCTCCATGCAGTGTAGTAGACGCCCTGCCTGCGCT
TTGAGTCACGCTACCCCACATCGCCCACACCATGCCGTTCTTCCGCATGC
TTCACCTAGTTCAGGAACACGTTGGGTATGCTCCTGTGAGCTTCCTTGTC
GTGGACAACTTCTCTTCTTGTTTGTTTTCGGCAAACGTTTTTTCTTTCCC
GAACCATTGCCTTTTTTTTGTCGTCAGGCTTAAGCAAGATCAAGCGGACA
AGGCTAGCTCGCAGCTCCTCAGCGTTCACCAGATGGTGAGTTCCCTGTGT
AGGCCTGCATCGGTGGGAGTTCTGACGTTAAGTTTGGCACGGTGTGTCTT
GAATAATGTGGTGGAGCGGGTTTGATCGTGCAGAAATGTCGCGGAGGATG
GTAAATATCTACCATGCATGTTACTGTTTTCTTTTCGTTTTCCGGTGTTG
TTGTCTCTCTCGGCTGCTGTTGCTGCTCGACGTGATGTTTCTGCTGTTGT
GCCCACGATCTGCAATCATGCCGAGGGTACCCGGGAGTCTGCTCAAGACG
TTCAGGAACATCTCTTTATTATTTCGCCATGTAGCGGGCGAAACCGCACT
CACCCCCCCCCCCTACACCACCCCTCCCCCACGTTAGATGGACACCATCG
ATTGGGAGACCCAGCAGCTTCAGGTGTTCAAAGCCCTCAAAGAGGGAAAT
GTGGCGCTCAACAAGCTCCACGAGGAGATGCCCCTGGACAAGGTGGAGGA
GCTCATGGCTGACACTGCGGAGTCCATCGCCATGGAAGAGGTTTGTTTTG
TTCGTGTTGCTCAGTGCTCTTTTGTGCAGTGGCGGCTACGGTTGAAGAGA
GGGTCGTGACACGCCAGTTTTCTCTCTTAAATCCGGTTTCTCTTAAACCG
TACTGTGAAATCTTTCTCATAGTCGTGGCAAGCCAGTTTGACTCTCTGAA
ATCGGTGCTTTCTCTTAAATAGTCTCTTAAACCGTAGCCGCCACTGTGTA
CAATAGTCGTAGGAGCCGAAGTCAAATCATTAGACTAAATCGTCAGCGCT
AACGAGTCTCACGGTATGATTTCGGCTTCTACAAACGTTATTCATGGGTT
TCGTGAGCCCCGGCACTTGCACTTCCGAGGAAGGTGACTCCCTCAGCGCT
CACTGCTCAAATGGTTTTGGTTTCTTCTTCTGTATAGTATAGTGTAACAT
CGCAGTGTCTGTTGAAAACAGCTCGTGATCGACGGGAAACGATTGAGTGC
TCTTGCTTCTGTTGTTGCTGTGCTTTCTTTTTTTTGCTTCGTGTAAACGG
ATATTATGGCCAGCACCAGGTGACGGTAGCTGAGTTTCTACGACGCAACG
AATTGATTTTACGAGAGTTTTTCCGGGGGAGGGACGGATGAAGTTCTTCC
GATTCAAATTCGAGTCGGGCGTCGTCACATGTTCTTGTAAACAGCGCCTG
GGCCATGTCAGCCGCGTGACCAGGGGATTCGCCCCCGACTCTTGTAGGAC
GGGTTCCAACTGTGGACGGACCAGGCGCGTGTGTATATGCGTTGTTTTTT
CTATGAAAACGAAATTGTGTTTGTTTATGCATACGAAGATGGAAGCCAAC
GTGTTCCTCCTGCAATGGCGATGGTGTTTGTTTTAGCATGAAGTCGAGGT
CTTCTACATAGCGTCACCCCGTTTGAATGCCCACATTTTTCTCAAGAGTC
ACGTCTGCCGTTTATGCAACCCCTTTTCGACAACGCCGCCAACACAAATG
CTGAAATATTATTCCTGCTTCACCGCGTTTGCTGTTTTTTCAACTGCTGT
CCCGACCGCAGGAAATTTCCAAGGCCATCGGCGGCTCTTGGACGGACGCC
AACGAGGAGGACCTCCTTGCCGAGTTGGCCGAGCTAGAATCCGAAGCGGC
ACCCGAATCAGTTCCAGCAACGGTACCGGAACCAGTTCCAGCAACGGCAC
CAGAACCAGTTCCAGCAACGGCATCAGAACCAGTTCCAGCAACGGCATCA
GAACCAGTTCCAGCAGCGGTCCCCGCCGCCGCCGAGGCCTCGAAACCGTC
GGAGGAACCTGCTGCACAGGAAGCATCCTCCCTGGAGGAACTGTTGCCGG
AGGCCCCAACGGAGGCGCCGGTGGTCGTCCCTGCCGTTACAGATACGGCA
GAACCTCAGCAGGAGGAGGAACGACCCATGCTCGTGCCGGCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7499:2221..7015-

>mRNA_Ecto-sp13_S_contig7499.18683.1 ID=mRNA_Ecto-sp13_S_contig7499.18683.1|Name=mRNA_Ecto-sp13_S_contig7499.18683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7499:2221..7015- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAACCTCATGTCCAGGAAGAAGAAGAGGGAGAGAGATCATGTTAC
CGACCAGGATAGAGCGGTCCTTGATCTCAAGAACTCTCGCGATCGGCTGA
CGCGTTACCAGAAGAAGGTAAGAGGCTTCCTTGTCGTGGACAACTTCTCT
TCTTGTTTGTTTTCGGCAAACGTTTTTTCTTTCCCGAACCATTGCCTTTT
TTTTGTCGTCAGGCTTAAGCAAGATCAAGCGGACAAGGCTAGCTCGCAGC
TCCTCAGCGTTCACCAGATGATGGACACCATCGATTGGGAGACCCAGCAG
CTTCAGGTGTTCAAAGCCCTCAAAGAGGGAAATGTGGCGCTCAACAAGCT
CCACGAGGAGATGCCCCTGGACAAGGTGGAGGAGCTCATGGCTGACACTG
CGGAGTCCATCGCCATGGAAGAGGAAATTTCCAAGGCCATCGGCGGCTCT
TGGACGGACGCCAACGAGGAGGACCTCCTTGCCGAGTTGGCCGAGCTAGA
ATCCGAAGCGGCACCCGAATCAGTTCCAGCAACGGTACCGGAACCAGTTC
CAGCAACGGCACCAGAACCAGTTCCAGCAACGGCATCAGAACCAGTTCCA
GCAACGGCATCAGAACCAGTTCCAGCAGCGGTCCCCGCCGCCGCCGAGGC
CTCGAAACCGTCGGAGGAACCTGCTGCACAGGAAGCATCCTCCCTGGAGG
AACTGTTGCCGGAGGCCCCAACGGAGGCGCCGGTGGTCGTCCCTGCCGTT
ACAGATACGGCAGAACCTCAGCAGGAGGAGGAACGACCCATGCTCGTGCC
GGCTTGA
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