mRNA_Ecto-sp13_S_contig7498.18682.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7498.18682.1
Unique NamemRNA_Ecto-sp13_S_contig7498.18682.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7498.18682.1 vs. uniprot
Match: D7FMD1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD1_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 9.920e-55
Identity = 244/305 (80.00%), Postives = 245/305 (80.33%), Query Frame = 1 
Query:    1 MKWGARSAGFGAG----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGGGAVGRGGDGGVDAAAGGAKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGLPTMKPPSSAATFSSFGSVNLPVPKPSASSPPSPTTTFGITPLTTSTQAFPSQXXXXXXXXXXXXXXXPASTSGGQLKFGLSPAAAAPGAGPPSFGSAVPTFGRPSAGEKPGDGGGDATKAAAAALAAREKRFAAQASGSXXXXXXXXXXXXXXXXXXXDTDAAXXXXXXXXXXXSRVAGDEDGEVDEEDEGDPV 903
            MKWGARSAG GAG    +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DG GAVGRGGDGGVDAAAGGAK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGLP MKPPSSAATFS FGSVNLPVP PSASSPPSPTT FGITPLTTSTQ FPSQXXXXXXXXXXXXXXX     GGQLKFGLSPAAAAPGA PPSFGSAVPTFG  SAGEKPGDG              REKRFAAQASGSXXXXX            XX     XXXXXXXXXXX        GEVDEEDEGDPV
Sbjct:    1 MKWGARSAGLGAGFSSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSGAVGRGGDGGVDAAAGGAKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGLPAMKPPSSAATFSPFGSVNLPVPNPSASSPPSPTTAFGITPLTTSTQGFPSQXXXXXXXXXXXXXXX--XXXGGQLKFGLSPAAAAPGAVPPSFGSAVPTFG--SAGEKPGDGXXXXXXXXXXXXXXREKRFAAQASGSXXXXXEKSAAGTTGAAPXXXXXXXXXXXXXXXXXXXXXXXXXXGEVDEEDEGDPV 301
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BLAST of mRNA_Ecto-sp13_S_contig7498.18682.1 vs. uniprot
Match: A0A6H5KRL3_9PHAE (TPR_MLP1_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRL3_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.210e-28
Identity = 194/343 (56.56%), Postives = 195/343 (56.85%), Query Frame = 1 
Query:    1 MKWGARSAGFGAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGGGA---------VGRGGDGGVDAAAGGAKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGLPTMKPPSSAATFSSFGSVNLPVPKPSASSPPSPTTTFGITPLTTSTQAFPSQXXXXXXXXXXXXXXXPASTSGGQLKFGLSPAAAAPGAGPPSFGSAVPTFGRPSAGEKPGDGGG---------------------------------DATKAAAAALAAREKRFAAQASGSXXXXXXXXXXXXXXXXXXXDTDAAXXXXXXXXXXXSRVAGDEDGEVDEEDEGDPV 903
            MKWGARSAGFGAGSXXXXXXXXXXXXXXXX      XXXXXXXXXXX               VGR GDGGVD        XXXXX  XXXX             XXXXXX  SSGLPTMKPPSSAATF S                   TTTFGITPLTT TQ FPSQ XXXXXXXXXXXXXX     GGQLKFGLSPAAAAPGA PPSFGSAVPTFGRP A                                          D        LAAREKRFAAQASGS                   DTD  XXXXXXXXXXXSRVAG+EDGEVDEEDEGDPV
Sbjct: 1666 MKWGARSAGFGAGSXXXXXXXXXXXXXXXXSVGTTPXXXXXXXXXXXXXXXXXXXXXXXXXXVGRRGDGGVDXXXXXXXXXXXXXKDXXXXKGGVFGSGKGFAGXXXXXXFGSSGLPTMKPPSSAATFPSXXXXXXXXXXXXXXXXXXXTTTFGITPLTTPTQGFPSQQXXXXXXXXXXXXXX-XXXXGGQLKFGLSPAAAAPGAVPPSFGSAVPTFGRPVASTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXLAAREKRFAAQASGSAGASAEKSAAGITGTAPASDTDXXXXXXXXXXXXXSRVAGEEDGEVDEEDEGDPV 2007
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7498.18682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMD1_ECTSI9.920e-5580.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRL3_9PHAE2.210e-2856.56TPR_MLP1_2 domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7498contigEcto-sp13_S_contig7498:2046..4987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size906
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_003410.1
Cds size906
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464018.3552225-CDS-Ecto-sp13_S_contig7498:2045..23981681464018.3552225-CDS-Ecto-sp13_S_contig7498:2045..2398Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7498 2046..2398 +
1681464018.3667557-CDS-Ecto-sp13_S_contig7498:2789..30691681464018.3667557-CDS-Ecto-sp13_S_contig7498:2789..3069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7498 2790..3069 +
1681464018.3760033-CDS-Ecto-sp13_S_contig7498:3165..32361681464018.3760033-CDS-Ecto-sp13_S_contig7498:3165..3236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7498 3166..3236 +
1681464018.3860118-CDS-Ecto-sp13_S_contig7498:3779..38311681464018.3860118-CDS-Ecto-sp13_S_contig7498:3779..3831Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7498 3780..3831 +
1681464018.4018593-CDS-Ecto-sp13_S_contig7498:4837..49871681464018.4018593-CDS-Ecto-sp13_S_contig7498:4837..4987Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7498 4838..4987 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7498.18682.1prot_Ecto-sp13_S_contig7498.18682.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7498 2046..4987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7498.18682.1

>prot_Ecto-sp13_S_contig7498.18682.1 ID=prot_Ecto-sp13_S_contig7498.18682.1|Name=mRNA_Ecto-sp13_S_contig7498.18682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=302bp
MKWGARSAGFGAGSSSSTTPSTTTTTTAAGTAATTPSSASVPAPAPAADG
GGAVGRGGDGGVDAAAGGAKVGGSGEKDGGGGKGGVFGSGKGFAGFGGGG
GFGSSGLPTMKPPSSAATFSSFGSVNLPVPKPSASSPPSPTTTFGITPLT
TSTQAFPSQQQQKPSSSSSLFSSSPASTSGGQLKFGLSPAAAAPGAGPPS
FGSAVPTFGRPSAGEKPGDGGGDATKAAAAALAAREKRFAAQASGSAAAS
AEKSAAGTTGSAPPSDTDAAGDTNASGGVSGSRVAGDEDGEVDEEDEGDP
V*
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mRNA from alignment at Ecto-sp13_S_contig7498:2046..4987+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7498.18682.1 ID=mRNA_Ecto-sp13_S_contig7498.18682.1|Name=mRNA_Ecto-sp13_S_contig7498.18682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2942bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7498:2046..4987+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTGGGGAGCACGGTCGGCTGGTTTCGGCGCGGGCTCCTCGTCGTC
GACGACCCCTAGTACTACCACAACCACAACCGCTGCCGGTACCGCTGCGA
CCACCCCGTCCTCCGCTTCTGTGCCGGCGCCGGCGCCGGCGGCGGACGGA
GGCGGTGCCGTTGGACGCGGAGGAGACGGCGGGGTAGATGCCGCTGCTGG
TGGCGCGAAAGTAGGAGGTAGCGGGGAGAAGGACGGCGGTGGTGGGAAGG
GAGGCGTGTTCGGCAGCGGCAAAGGGTTCGCCGGCTTCGGGGGAGGGGGA
GGGTTCGGGAGCAGCGGCTTGCCTACCATGAAGCCGCCCTCGTCAGCCGC
AACGTGAGGTTTTGGTTTGATGTTGTTGCTGGTTTTCTAGCGGGGGTGGG
GCCGGTTTGATGGGGGCTCAGAAAGCAGAAGCCTCAATTACAGCAGGCCC
CCCATGTGTCTGGCTGTGTAAAGGGACAACGAGAGCTGACGTTGATTTCA
CGGGTGTGTATCTCGTCACCTCCCCACCGAATTCTTGTGTCACCTCGGTA
GTGGTGTCGTGTGATGTTGTTTCTGTTGACCCCTAGTAGCGTATCAATAC
CACATGCACGCTTTTGCCGTTAGAGAAACACATTGGCACCCCCGTCTTCG
ACACCAACATACCTACCTTGGCCCACCGACGAGGGGTGGGTATCCCCTTT
GTCCTTTCTCACATCCGCGGCGCCCCCGTTGTCGTAACTCCCAGGTTCTC
TTCCTTCGGGTCGGTAAACCTGCCGGTCCCCAAACCTTCCGCATCATCGC
CTCCTTCCCCGACGACGACCTTCGGGATCACCCCGCTCACCACCTCGACA
CAAGCGTTCCCGTCCCAGCAGCAGCAGAAGCCGTCGTCATCGTCGTCGCT
GTTCAGCTCGTCTCCTGCTTCAACCAGCGGCGGGCAGCTTAAGTTCGGAC
TCAGCCCCGCGGCCGCGGCTCCCGGAGCGGGCCCCCCTTCCTTCGGCTCC
GCGGTTCCGACGTTCGGCAGGCCGGTGGCTTCGACTTCGGCGACGGCTCC
TGCTGCTGCTGCTGGGGTGGCGAATGCCGCAACGACGACCCCGGCTGTTT
CTTCTACCGCTGCGGGCGAGAGCGCGGGGGAGAAGCCAGGCGACGGCGGC
GGGGATGCGACTAAGGCTGCTGCCGCGGCGCTGGCCGCAAGGTTCGTGTT
TGAGTCGATGGGCCGTCATACTGTTGTTGTGGTGATCATCGTCGCATCCA
CGTGGAAAGGCGGTTGTGATGCGACCGTTTCATGGAGTACCACTGTATGT
ATTCCATGTGCAATACGTGCCATTCCGACCAGTGAGAACCGGATTAGGTT
AGATTCGAACGGATCGAGCACGCGACGCTAGTCGTGGGTGTTGTTGTATG
TCGCAGGTTTGCTCTTTTTGTCGATTCTGTTGTGTGACTGCTGTTTCGAC
GTGTGGTTGTGTAGGCCTGGAGTGGCCTGTCCTGTATTTCATCTTCTCGC
GGAAGTATTGATGGTACACGCCAATTTTTTTTTGTCTACCCGCGGAACAT
GTCTCCTAGCAGTGACCAGCGCTGGGTCCAATGCTCTCTGCCTGGTCGAT
ATCGCTACGTTGTCTGCTGCTTGTTGTTTGTTTTCGGTTCTTCTCTAGTC
CCCTCGTTTTGTCCATTGTTTTGTTGTGCTCGATTCTGACGCATTCCTCC
GCCCGTGCTCCCACTTTATCCTTCTGTCGGCCAGGGAGAAGCGTTTCGCT
GCCCAAGCTTCTGGTTCTGCGGCTGCCTCCGCTGAGGTAGGCACCGGGTT
GTTCTCTGTGTTTGTTGCATTCTTTTTTTTTCTGAATTCTCCCAAGAGTC
TTGATTTTTCTTGTTCACCAGGTCTAGGCCTAGTCTCTCTTTCTCCTCCA
AACTCTCGGTTTTCACGCATCAGAACGTTAGACGAAGCCTTATTAATTCA
GCAGTCCAATTGGTTCGCCTTCCTCTATCTAGCAAGACTTCCTGTCCACC
CTTCCGACGCCCCTGTGCGGTGTGGCATGCCGTTGTCTTGACCGTGACAA
GGGTTCGGACGCCCTTCTGCTCTTCTTGCTCTGCTGTGGCGCCTATTTTT
TGCAAGCTAAAGCAATTAGTCCTATACATTACATGGTCAAAGACCAAGGT
GTATTGCATTGCCCCGACGACAGTTTGAAACTGCCATCCCGTAAGTCTTG
AGGCAAGGCTTTTATTTGAACACGCTTCCAAGCTAAGTTGTTCTTTTGTG
TTTAGGATCCTTTCTTTGAAGGAACTTTGGAGCGAACCCGCTCGACCGGT
GCTGTTAGACGACGCGATGGACGAAGCCTAGTTGGGGGGGTTATTTTACG
GACCTAACCCGAGTGGCTCATTGTGCGTCATTGCCCGTGTCGTATATTTT
GCGTTTCTCGCCACCGCTGAAAGACAACACTTTCCACTGATTCCCTCCCG
CCGCGCACGAAGGAACGGTTGGCCATCGTTTATCGATCGTGTGGCAACAA
TGATCCGTCCTCTCGAGTACGGGCGGTCAACGGCCTAACAACGAATGCGC
GCAAAGCATGAGTACGCCCCCCCCCCCCCCCCCCCCCTTCGCCCGCTTCG
TGGAACGGATTCAGCAAAGTGCAGGCGGGACCCCGGGGTGTGCGCCCCCC
CCCGGCACCNNNNNNNNNNGCAAAAAAGAACCGCCCCCTCCAGTTAGGGG
GGTCAACGGCCAAAAAAAGAAAGCCCGAAAAGCATGAGTACGCCCCCCCC
CCCCCCCGCTCCCATTTCGCCTGCTTCGTGGAACGTATTCAGAAGAGTGC
TGCTGGAACCACGGGTTCTGCTCCCCCCAGCGACACCGATGCCGCCGGCG
ACACGAACGCCTCTGGCGGAGTTTCGGGGAGCAGGGTTGCCGGTGACGAG
GACGGGGAGGTTGACGAAGAAGACGAGGGCGACCCGGTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7498:2046..4987+

>mRNA_Ecto-sp13_S_contig7498.18682.1 ID=mRNA_Ecto-sp13_S_contig7498.18682.1|Name=mRNA_Ecto-sp13_S_contig7498.18682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7498:2046..4987+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTGGGGAGCACGGTCGGCTGGTTTCGGCGCGGGCTCCTCGTCGTC
GACGACCCCTAGTACTACCACAACCACAACCGCTGCCGGTACCGCTGCGA
CCACCCCGTCCTCCGCTTCTGTGCCGGCGCCGGCGCCGGCGGCGGACGGA
GGCGGTGCCGTTGGACGCGGAGGAGACGGCGGGGTAGATGCCGCTGCTGG
TGGCGCGAAAGTAGGAGGTAGCGGGGAGAAGGACGGCGGTGGTGGGAAGG
GAGGCGTGTTCGGCAGCGGCAAAGGGTTCGCCGGCTTCGGGGGAGGGGGA
GGGTTCGGGAGCAGCGGCTTGCCTACCATGAAGCCGCCCTCGTCAGCCGC
AACGTTCTCTTCCTTCGGGTCGGTAAACCTGCCGGTCCCCAAACCTTCCG
CATCATCGCCTCCTTCCCCGACGACGACCTTCGGGATCACCCCGCTCACC
ACCTCGACACAAGCGTTCCCGTCCCAGCAGCAGCAGAAGCCGTCGTCATC
GTCGTCGCTGTTCAGCTCGTCTCCTGCTTCAACCAGCGGCGGGCAGCTTA
AGTTCGGACTCAGCCCCGCGGCCGCGGCTCCCGGAGCGGGCCCCCCTTCC
TTCGGCTCCGCGGTTCCGACGTTCGGCAGGCCGAGCGCGGGGGAGAAGCC
AGGCGACGGCGGCGGGGATGCGACTAAGGCTGCTGCCGCGGCGCTGGCCG
CAAGGGAGAAGCGTTTCGCTGCCCAAGCTTCTGGTTCTGCGGCTGCCTCC
GCTGAGAAGAGTGCTGCTGGAACCACGGGTTCTGCTCCCCCCAGCGACAC
CGATGCCGCCGGCGACACGAACGCCTCTGGCGGAGTTTCGGGGAGCAGGG
TTGCCGGTGACGAGGACGGGGAGGTTGACGAAGAAGACGAGGGCGACCCG
GTCTAA
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