prot_Ecto-sp13_S_contig7496.18680.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig7496.18680.1
Unique Name	prot_Ecto-sp13_S_contig7496.18680.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	646

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7496.18680.1 vs. uniprot
Match: A0A6H5JRX7_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRX7_9PHAE)

HSP 1 Score: 895 bits (2313), Expect = 0.000e+0
Identity = 538/631 (85.26%), Postives = 552/631 (87.48%), Query Frame = 0

Query:   20 MDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASSARVANLPDEVETELFQHVSWLCENGHPTNWDNIKAIAWKLGKMAGIE---DFAASNHWLKRFKARFPALEARYSHHLRTTQLRKADMASAERWRDERDHSDATSLCDGGSSGGECGGGGGRYVVPTDLKATTAAGGYLALERAKVEAEAGTAGRHPQQQAAGIALNTAGAVTPTATASGAXXXXXTSTSAAHQEAQLRLAHASMVGGLPGHLLSAQPYNGSQLQIASSPHGRHRLLDSTVRGGVWGQAGTGPLVGSPSTLGEIPPTTTPPPNFQLQQQYQHLGVGLHQAGQMGMGGQRMVPIPGQLKQEPQXXXXXXXXXXXXXXXXX-LVSGGGVPGVPSGQMDASRMQAVRSQGPTPMQFAGMAGQNMNMGLGGGAHPQQVGMAMDARGGAMTTMYPPAGVGGAGTQAMGMVGPWQATVGWPDQLMGPWQHVAISQVQGIQQQQLLHPAATPPSSYESQGMLNPSNTGLA-LLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGPASSAWLNSPAGLAFGQHPQPAMLASIALGHAVGNGXXXXXXADSLLDMQHYAVGATAGAGSAEQESVQHQEQPPK 645
            MDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASSAR  NLPDEVETELFQHV WLCENGHPTNWDNIKAIAWKLGK+AGIE   DFAASNHWLKRFKARFP LEARYSHHLRTTQL KAD+ASA+R RD+RDHSDATSL DGG           RY V TDLK TTAAGGYLALERAKVEAEAGTA R     AAGIALNTAGAVTP AT    XXXXX   SAAHQEAQLRLAHASMVGGLPGHLLSA PY+GSQLQIA SP G HRLLDSTVRGGVWGQAG G LVGSPSTLGEIPPTT PP NFQLQQQYQHLG+GLHQAGQMG+GGQRMVPIPGQLKQEP XXXXXXXXXXXXXXXXX LVSGGG+PGVP+GQMDASRMQAVRSQGPTPMQF GM GQNMNMGLGGGAHPQQVGMA+DARGGAMTTMYPPAGVGGAGTQAMGMVGPWQA VGWP+QLMGPWQH  ISQVQGIQQQQLLHP ATPPSSYESQG LNPS TGL+ LLQXXXXXXXXXXXXXXXXXXXXX              QGPASSAWLNSPAGL  GQHPQPAMLAS+ALGHAVG GXXXXXXA+ LLDMQHY  GATAGAGSAEQESVQ QEQ PK
Sbjct:    1 MDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASSARATNLPDEVETELFQHVLWLCENGHPTNWDNIKAIAWKLGKVAGIEGDADFAASNHWLKRFKARFPELEARYSHHLRTTQLSKADIASADRGRDKRDHSDATSLGDGGXXXXXXXXXXXRYFVSTDLKVTTAAGGYLALERAKVEAEAGTARRXXXXXAAGIALNTAGAVTPAATXXXXXXXXXXXXSAAHQEAQLRLAHASMVGGLPGHLLSAHPYSGSQLQIAPSPQGCHRLLDSTVRGGVWGQAGAGVLVGSPSTLGEIPPTTCPP-NFQLQQQYQHLGLGLHQAGQMGIGGQRMVPIPGQLKQEPXXXXXXXXXXXXXXXXXXXLVSGGGLPGVPAGQMDASRMQAVRSQGPTPMQFTGMTGQNMNMGLGGGAHPQQVGMAIDARGGAMTTMYPPAGVGGAGTQAMGMVGPWQAAVGWPEQLMGPWQHTTISQVQGIQQQQLLHPTATPPSSYESQGKLNPSGTGLSWLLQXXXXXXXXXXXXXXXXXXXXX--------------QGPASSAWLNSPAGLGLGQHPQPAMLASVALGHAVGIGXXXXXXAEPLLDMQHYTAGATAGAGSAEQESVQRQEQSPK 616

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7496.18680.1 vs. uniprot
Match: D8LTF1_ECTSI (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTF1_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 5.280e-124
Identity = 210/251 (83.67%), Postives = 213/251 (84.86%), Query Frame = 0

Query:   20 MDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASSARVANLPDEVETELFQHVSWLCENGHPTNWDNIKAIAWKLGKMAGIEDFAASNHWLKRFKARFPALEARYSHHLRTTQLRKADMASAERWRDERDHSDATSLCDGGSSGGECGGGGGRYVVPTDLKATTAAGGYLALERAKVEAEAGTAGRHPQQQAAGIALNTAGAVTPTATASGAXXXXXT------STSAAHQEAQLRLAHASMVG 264
            MDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASSAR  NLPDEVETELFQHV WLCENGH TNWDNIKAIAWKLGKMAGIEDFAASNHWLKRFK RFPALEARYSHHLRTTQL KADMA AER RDERD+SDATSL DGG SGGE    G  YVVPTDLK TTAAGGYLALERAKVEAEA TA RH QQQAAGIA NTAGAVTP       XXXXX       STS+AHQEAQLRLA A + G
Sbjct:    1 MDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASSARATNLPDEVETELFQHVLWLCENGHSTNWDNIKAIAWKLGKMAGIEDFAASNHWLKRFKVRFPALEARYSHHLRTTQLSKADMAYAERGRDERDNSDATSLGDGGCSGGEGXXXGRSYVVPTDLKVTTAAGGYLALERAKVEAEASTARRHQQQQAAGIAPNTAGAVTPAXXXXXXXXXXXXXXXXXXSTSSAHQEAQLRLAPAPIAG 251

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7496.18680.1 vs. uniprot
Match: A0A835YWV1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWV1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.630e-20
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 0

Query:   16 ADASMDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASSARVANLPDEVETELFQHVSWLCENGHPTNWDNIKAIAWKLGKMAGIEDFAASNHWLKRFKARFPALEAR 130
            A+ +M DS+   +  SKR+++E+FG+AWST+QPRLVGKV    +SS+R   LPD  E  L Q V W+ ++    NWD IK  A  L ++  +E F A + W KR + RFP L AR
Sbjct:  353 AEPAMVDSDPVCLG-SKREISEYFGIAWSTLQPRLVGKVDQDASSSSRKTRLPDATERSLAQRVLWMVDHRVSVNWDGIKICADALARVQNLEGFTADDTWAKRIRYRFPGLAAR 466

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig7496.18680.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig7496.18680.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5JRX7_9PHAE	0.000e+0	85.26	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
D8LTF1_ECTSI	5.280e-124	83.67	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A835YWV1_9STRA	3.630e-20	45.22	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 539..559
None	No IPR available	GENE3D	1.10.10.60		coord: 68..124 e-value: 1.5E-8 score: 36.6
IPR006600	HTH CenpB-type DNA-binding domain	SMART	SM00674	cenpb	coord: 65..130 e-value: 0.0039 score: 26.4
IPR006600	HTH CenpB-type DNA-binding domain	PROSITE	PS51253	HTH_CENPB	coord: 59..130 score: 9.517
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 70..124

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig7496	contig	Ecto-sp13_S_contig7496:1344..4470 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig7496.18680.1	mRNA_Ecto-sp13_S_contig7496.18680.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig7496 1344..4470 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig7496.18680.1 ID=prot_Ecto-sp13_S_contig7496.18680.1|Name=mRNA_Ecto-sp13_S_contig7496.18680.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=646bp
RGLSVEPIDTARGDDADASMDDSEVAYIARSKRDVAEHFGVAWSTMQPRL
VGKVGGKPASSARVANLPDEVETELFQHVSWLCENGHPTNWDNIKAIAWK
LGKMAGIEDFAASNHWLKRFKARFPALEARYSHHLRTTQLRKADMASAER
WRDERDHSDATSLCDGGSSGGECGGGGGRYVVPTDLKATTAAGGYLALER
AKVEAEAGTAGRHPQQQAAGIALNTAGAVTPTATASGAAAGVATSTSAAH
QEAQLRLAHASMVGGLPGHLLSAQPYNGSQLQIASSPHGRHRLLDSTVRG
GVWGQAGTGPLVGSPSTLGEIPPTTTPPPNFQLQQQYQHLGVGLHQAGQM
GMGGQRMVPIPGQLKQEPQQQQQQQQQQQQQQQQQHLVSGGGVPGVPSGQ
MDASRMQAVRSQGPTPMQFAGMAGQNMNMGLGGGAHPQQVGMAMDARGGA
MTTMYPPAGVGGAGTQAMGMVGPWQATVGWPDQLMGPWQHVAISQVQGIQ
QQQLLHPAATPPSSYESQGMLNPSNTGLALLQQQHQQHQQLLQQQHQHHQ
QQRQQQQQQQQHQQQHHQGPASSAWLNSPAGLAFGQHPQPAMLASIALGH
AVGNGGGGGGGADSLLDMQHYAVGATAGAGSAEQESVQHQEQPPK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006600	HTH_CenpB_DNA-bd_dom
IPR009057	Homeobox-like_sf