prot_Ecto-sp13_S_contig7491.18676.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7491.18676.1
Unique Nameprot_Ecto-sp13_S_contig7491.18676.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length342
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7491.18676.1 vs. uniprot
Match: D8LL06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL06_ECTSI)

HSP 1 Score: 472 bits (1215), Expect = 2.240e-166
Identity = 233/237 (98.31%), Postives = 234/237 (98.73%), Query Frame = 0 
Query:   69 MPSQAQRVPEDPNELQRLEREYYERAKKRNTRKRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYRWKQNAETIELQIPVPDDVTKRKTTLDLDPAGDRIHVSFPNRPDFEPLEGKFKGLISPLDSVWMLDE 305
            MPSQAQR+PEDPNELQRLEREYYERAKKRNTRKRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRY WKQNAETIELQIPVPDDVTKRKTTLDLDPAGDRIHVSF NRPDFEPLEGKFKGLISPLDSVWML E
Sbjct:    1 MPSQAQRIPEDPNELQRLEREYYERAKKRNTRKRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYSWKQNAETIELQIPVPDDVTKRKTTLDLDPAGDRIHVSFSNRPDFEPLEGKFKGLISPLDSVWMLGE 237
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BLAST of mRNA_Ecto-sp13_S_contig7491.18676.1 vs. uniprot
Match: A0A836CLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX2_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.240e-44
Identity = 86/238 (36.13%), Postives = 129/238 (54.20%), Query Frame = 0 
Query:  118 DLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFN-EPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYRWKQNAETIELQIPVPDDVTKRKTTLDLDPAGD--------------RIHVSFPNRPDFEPLEGKFKGLISPLDSVWMLDENDDG-KMLALTVKKRRAARDKTAWWSGVLEGDDKW 339
            ++P QR+CH+YRW QT     VE+P+ +AC+ EDL  V+ +  MQ++I++D +F  + G FPG VD R+ ++ +HS  + + Y+ L + KL  PG  E W+ LL+GE  +PT+RF+G T  Y W Q    I++   VP   T   T +D    G               R+ +S    P+    E +F+G I   D  WMLDE+  G K L++ V KR +      WW G+ E +D W
Sbjct:   43 EVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDEDGKGGKELSIQVAKRPSGAG-VPWWGGLFEHEDGW 279
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7491.18676.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL06_ECTSI2.240e-16698.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CLX2_9STRA1.240e-4436.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 228..341
e-value: 1.9E-17
score: 65.3
coord: 118..227
e-value: 1.5E-10
score: 43.1
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 229..339
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 125..232
IPR007052CS domainPFAMPF04969CScoord: 127..193
e-value: 0.0013
score: 19.7
coord: 236..318
e-value: 3.3E-7
score: 31.2
IPR007052CS domainPROSITEPS51203CScoord: 233..333
score: 13.324
IPR007052CS domainPROSITEPS51203CScoord: 123..220
score: 8.521
NoneNo IPR availablePANTHERPTHR12356:SF3NUCLEAR MIGRATION PROTEIN NUDCcoord: 44..226
NoneNo IPR availablePANTHERPTHR12356:SF3NUCLEAR MIGRATION PROTEIN NUDCcoord: 227..338
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..341
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.785
IPR037898NudC familyPANTHERPTHR12356NUCLEAR MOVEMENT PROTEIN NUDCcoord: 44..226
coord: 227..338

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7491contigEcto-sp13_S_contig7491:3268..6349 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7491.18676.1mRNA_Ecto-sp13_S_contig7491.18676.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7491 3243..6943 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7491.18676.1 ID=prot_Ecto-sp13_S_contig7491.18676.1|Name=mRNA_Ecto-sp13_S_contig7491.18676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=342bp
MAVAVLLAALLAAVRPGAGFIAPTLPRPPGLPSQQAISHQHTPRAARCSQ
SRRASAASEQGEDEGESWMPSQAQRVPEDPNELQRLEREYYERAKKRNTR
KRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDE
DLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYI
HLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYRWKQNAETIELQ
IPVPDDVTKRKTTLDLDPAGDRIHVSFPNRPDFEPLEGKFKGLISPLDSV
WMLDENDDGKMLALTVKKRRAARDKTAWWSGVLEGDDKWEP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR007052CS_dom
IPR037898NudC_fam