mRNA_Ecto-sp13_S_contig7491.18676.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7491.18676.1
Unique NamemRNA_Ecto-sp13_S_contig7491.18676.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7491.18676.1 vs. uniprot
Match: D8LL06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL06_ECTSI)

HSP 1 Score: 472 bits (1215), Expect = 4.270e-163
Identity = 233/237 (98.31%), Postives = 234/237 (98.73%), Query Frame = 2 
Query:  230 MPSQAQRVPEDPNELQRLEREYYERAKKRNTRKRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYRWKQNAETIELQIPVPDDVTKRKTTLDLDPAGDRIHVSFPNRPDFEPLEGKFKGLISPLDSVWMLDE 940
            MPSQAQR+PEDPNELQRLEREYYERAKKRNTRKRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRY WKQNAETIELQIPVPDDVTKRKTTLDLDPAGDRIHVSF NRPDFEPLEGKFKGLISPLDSVWML E
Sbjct:    1 MPSQAQRIPEDPNELQRLEREYYERAKKRNTRKRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYSWKQNAETIELQIPVPDDVTKRKTTLDLDPAGDRIHVSFSNRPDFEPLEGKFKGLISPLDSVWMLGE 237
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BLAST of mRNA_Ecto-sp13_S_contig7491.18676.1 vs. uniprot
Match: A0A836CLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX2_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.450e-42
Identity = 86/238 (36.13%), Postives = 129/238 (54.20%), Query Frame = 2 
Query:  377 DLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFN-EPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYRWKQNAETIELQIPVPDDVTKRKTTLDLDPAGD--------------RIHVSFPNRPDFEPLEGKFKGLISPLDSVWMLDENDDG-KMLALTVKKRRAARDKTAWWSGVLEGDDKW 1042
            ++P QR+CH+YRW QT     VE+P+ +AC+ EDL  V+ +  MQ++I++D +F  + G FPG VD R+ ++ +HS  + + Y+ L + KL  PG  E W+ LL+GE  +PT+RF+G T  Y W Q    I++   VP   T   T +D    G               R+ +S    P+    E +F+G I   D  WMLDE+  G K L++ V KR +      WW G+ E +D W
Sbjct:   43 EVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDEDGKGGKELSIQVAKRPSGAG-VPWWGGLFEHEDGW 279
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7491.18676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL06_ECTSI4.270e-16398.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CLX2_9STRA1.450e-4236.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7491contigEcto-sp13_S_contig7491:3243..6943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1645
Hectar predicted targeting categorysignal peptide
Exons6
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-11_006260.1
Cds size1026
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7491.18676.1prot_Ecto-sp13_S_contig7491.18676.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7491 3268..6349 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464017.751827-UTR-Ecto-sp13_S_contig7491:3242..32671681464017.751827-UTR-Ecto-sp13_S_contig7491:3242..3267Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7491 3243..3267 +
1681464017.8296404-UTR-Ecto-sp13_S_contig7491:6349..69431681464017.8296404-UTR-Ecto-sp13_S_contig7491:6349..6943Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7491 6350..6943 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464017.7638414-CDS-Ecto-sp13_S_contig7491:3267..35191681464017.7638414-CDS-Ecto-sp13_S_contig7491:3267..3519Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7491 3268..3519 +
1681464017.7748065-CDS-Ecto-sp13_S_contig7491:4113..43861681464017.7748065-CDS-Ecto-sp13_S_contig7491:4113..4386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7491 4114..4386 +
1681464017.7858372-CDS-Ecto-sp13_S_contig7491:4996..51021681464017.7858372-CDS-Ecto-sp13_S_contig7491:4996..5102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7491 4997..5102 +
1681464017.796996-CDS-Ecto-sp13_S_contig7491:5276..53891681464017.796996-CDS-Ecto-sp13_S_contig7491:5276..5389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7491 5277..5389 +
1681464017.8079152-CDS-Ecto-sp13_S_contig7491:5678..58441681464017.8079152-CDS-Ecto-sp13_S_contig7491:5678..5844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7491 5679..5844 +
1681464017.8187408-CDS-Ecto-sp13_S_contig7491:6233..63491681464017.8187408-CDS-Ecto-sp13_S_contig7491:6233..6349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7491 6234..6349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7491.18676.1

>prot_Ecto-sp13_S_contig7491.18676.1 ID=prot_Ecto-sp13_S_contig7491.18676.1|Name=mRNA_Ecto-sp13_S_contig7491.18676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=342bp
MAVAVLLAALLAAVRPGAGFIAPTLPRPPGLPSQQAISHQHTPRAARCSQ
SRRASAASEQGEDEGESWMPSQAQRVPEDPNELQRLEREYYERAKKRNTR
KRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDE
DLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYI
HLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYRWKQNAETIELQ
IPVPDDVTKRKTTLDLDPAGDRIHVSFPNRPDFEPLEGKFKGLISPLDSV
WMLDENDDGKMLALTVKKRRAARDKTAWWSGVLEGDDKWEP*
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mRNA from alignment at Ecto-sp13_S_contig7491:3243..6943+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7491.18676.1 ID=mRNA_Ecto-sp13_S_contig7491.18676.1|Name=mRNA_Ecto-sp13_S_contig7491.18676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3701bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7491:3243..6943+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGCGGTAGAGAGAGATACTAGAGATGGCGGTGGCCGTGCTATTAGCAG
CACTGCTGGCAGCTGTGAGGCCTGGTGCCGGCTTCATAGCTCCAACCCTC
CCTAGACCACCCGGTCTCCCATCCCAACAAGCGATCTCACACCAGCACAC
ACCGCGGGCCGCACGATGCTCACAGTCCCGCCGAGCCTCCGCCGCATCAG
AGCAAGGAGAAGACGAAGGAGAGTCGTGGATGCCCTCGCAGGCGCAGCGT
GTCCCGGAGGATCCCAATGAGTTGCAGGTGGGTGGTGGTGGTGGTTCCTG
CCGTCGCTCTCCCTGGCGCGCTATGTTTTCATCAAGAAACAAGACAAGAC
GCGTGTGGTTTCGCGAAACGCAAGTTTGCACGTGTGTTTATGTAGCAGTT
GAAGAAGGGCCAGCGTCGGAGTGTTCGTCGTATAACTTGTTCGTAGTCGC
CGTGATGACTGCTGTTGACGTCTCGAAGGGTAAAGCAGCATCTACCAAGC
GTTAGTATTACCTTGTTTGATATTTTCAGTGGCCCAGGCATGGTCTCGTG
CCAGCTCTCCATCTCTCCGTCTTCTTACGCGTGGAGATTGGTTCCAGTCA
GTTGGCACTGCTGCCCCCCACCACTACATGCACCTACAATACAAGTCGCC
ACAGTAGTGTTTCGCTTTTTTATACCATCACGTGCATAGGCGTCAATATA
CTCGAAATAAGCCCAGTACCCAGCCGGTCCACCTCCACTCACTTACAAGA
CTCCAACATATCCTGTTCGACTGTGGTTATATCTCGAACGGGTGGTCTTT
CTGTGTTTGCATTTATTTTTCCGAATAATCCCGCCCCCGCCCCACCCCGC
CTACGCCGAAACTGAAACCAGAGGTTGGAGCGAGAGTACTACGAAAGAGC
CAAAAAGCGAAACACGCGGAAGCGCCAGGAGGACATCGACAGGCTCACGG
AACTCAGGCACAATCTCCGAGACTTGCCGATGCAGCGCCAGTGCCACCGC
TACCGCTGGACACAGACGGAGACGACTTTCGACGTGGAGATCCCGATGCT
GAAAGCCTGCAGAGACGAGGACCTGTACCTCGTGGTGGAGAAGGACCAGA
TGCAGGTGGCCATCAAGACGGACGAGTCCTTCGGGGCAATAACGGTACGG
CTTAGGCTATAGGCTACTCGTTTCGGTTGGCCCTTGAATGTCGTATGCAT
GCCAGTTTTCGAGGGTGCGCTCTATCGAGCATCTTGTCAATTGAGGGGTA
CACTCCGGTTCATCAATCTCCTCCTCCACAAGGACACATTTGAGGTCGTT
GAGCTGCTTGAGTGTGGGCCTGTCTCCTTTTGTTCAAACTGCTTTATAAC
CCCAACTATGTCTGGGTAAGTGTTGATGTTGTCTGGAGGAAAGCAACATG
TTGTGGAATTAAAAATGAATTTGCTGTCAAAATCGAGGTCCGTATGGAAG
GACGCTGCATTGGTCGGGGTAAGTAATGATGTTGTCTGGAGGAAAGCAAC
ATGCAGTGGAGAATCAATAAATGAATTTGCTGTCAAATCTGCGAGGTCCA
TACTGTACAAGTTTGGCAGGAACGCGGCATTGGCTTGAGTCGGTCTGTCA
TCCTGTTCTAAATCTGATCGATTATCGCAGTTTTTCTGTGGGCTCTCGCT
GGTTGTTGCCGACACTGCTGCTGTCTCCCGCTGTATACTGCCAATATTTC
ACGCGTTTCGTGGGCCTGGGTGTGCGCGTCTGTTTTGTGCGCCGATGGAT
GTAGGGCGTGTTCCCTGGGGATGTGGATGCAAGAAGCTGCAGCTTTCGGA
TCCACAGTCGGTTCAACGAACCCTACATTCACCTGGAGATCGTGAAATTG
ACCGCGCCAGGTAATTTGAAGAGGCTCAAGCTCCTCTCATTGAAGTCCGG
ATGTTGTGCGTCGTACGTAACATTACTGATGTTTATGGCGGAAGCAGATA
GTTACGGTACTGTAACGGTTGAAGTGAGCTGGCACTCTGTGCACACGGTG
AACACGGTCACTGTATGCCTTTTTTTCGGAAAAGGTATGTACGAGTTTTG
GCACGAGCTGCTGCAGGGCGAAGAGGAGAGCCCTACGATCCGCTTCAAAG
GGGAAACGCCGCGCTACCGCTGGAAGCAGAACGCCGAAACAATAGAGGTC
CGTGTCGTGTCGCTGTTAGGGGTATAGCGGTATCGTCACCACCAGTTGTT
TTTGGCGTTCTTCTCTGCGTGAGCTGTAATAGTGGCCATGCTGCGCTTTG
AGAACCCGGCAGCTTACAAGGACGCACATCGGTGAGATACACAGCAGCAG
CAGTGACGTCACAACAGACGCCGCGCGTCGTCAAAAGGTTGCACTGGTCC
ATCGCATGACATCTGTCCACCTTGGAGACGATTTCGTACATACTTCCTGT
GCTATTTTGTGTTGTTTCTTTTGTGAACCAATCCAGTTGCAGATCCCCGT
CCCAGATGACGTGACAAAGCGGAAGACCACTCTCGACCTCGATCCTGCGG
GAGACCGGATACACGTTTCCTTCCCGAACAGGCCGGACTTTGAGCCCCTG
GAGGGCAAGTTCAAGGGCCTCATTAGCCCCCTCGACTCCGTGTGGATGCT
GGGTGAGCTTGCGTTCCTGCAGCCAGCTGTCGTCGTCTTGACCTTGCGGA
TAATTACCATGGATTTGCATTGGCGGAGTTAGACTCGCTGATGTGTTGAG
TGCCTCACTGGCGTTGCTTGATGATAAACCGTCTTTTTACCGGAGTGAGA
CTAGGGAAACCCCGTTGTTGCCCCCCGGTCTTGTTCCTTGCAGCATTCTT
TGTTTTCTTCACACTCATTGCTTCCACGCCTTGTTGAACGGCACTTCAAT
GATTCAAGCTTGCGATAGGCTTGTTCATGTGCTGTCTCGCTTGCCCTCAT
CGCAACACGTTAGCTCTACATTAGACGAGCCATGTTTCTGCAATCGCCCT
CTCACACCTGGTATTAACAACATTTTTTTTTTTCCTTCAAGACGAGAACG
ACGACGGGAAGATGCTGGCGCTGACCGTGAAGAAACGAAGAGCTGCCCGA
GACAAAACGGCTTGGTGGAGCGGTGTGCTGGAGGGGGACGACAAATGGGA
GCCATAGGAGCAGACGAGTACAAGCCCACGACCGCCACAGCAGTAGTTAC
AGGAGTATTTCCTGTCTGGTATTTTTGTATGCATACTTGCCAACGTTGGG
GATACAAAATCTTGCGGATGGTCTAGTGTCTGTAGATAAAGGAAGGTGAG
GTCACCCACGGCTTGACAGCGAGTATTTTCAGAGGGAGCCGGTTTGCGAA
GAAGTGTACGCATACCTGATGCAAAAAAATTAACCGTTTCCAATGTTTCG
GGGCAGCAGTTCCTGCCGCATGATCACTGTCCTCGCTTCATGCGTATCAG
TCCCGGTCGGGCATGTTGGAGAGCAAACACAACGGAGCCAGGCCACACTT
TGCTGCTCTACCTTTTCCGGTAGCGCGTTTTGTGTGAGGGACGGTTGACG
ACAAGATGCGTCTGCTCTTTGATCTTTTTGACCTCTTCCTACGTTGATCA
GCCCGCCTTGCTTCGCAATGCCGCCGCGTGCAGAATGTATCAACCTCGAG
TGAACGAGATGAGCACCATGTGCCCACGCCTCTCAATCGCTTCAACCACG
CGATGAAGGCACAACGGAGAGACTAAAAACCAACTACTTGATTCAAGACA
T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7491:3243..6943+

>mRNA_Ecto-sp13_S_contig7491.18676.1 ID=mRNA_Ecto-sp13_S_contig7491.18676.1|Name=mRNA_Ecto-sp13_S_contig7491.18676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7491:3243..6943+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGTGGCCGTGCTATTAGCAGCACTGCTGGCAGCTGTGAGGCCTGG
TGCCGGCTTCATAGCTCCAACCCTCCCTAGACCACCCGGTCTCCCATCCC
AACAAGCGATCTCACACCAGCACACACCGCGGGCCGCACGATGCTCACAG
TCCCGCCGAGCCTCCGCCGCATCAGAGCAAGGAGAAGACGAAGGAGAGTC
GTGGATGCCCTCGCAGGCGCAGCGTGTCCCGGAGGATCCCAATGAGTTGC
AGAGGTTGGAGCGAGAGTACTACGAAAGAGCCAAAAAGCGAAACACGCGG
AAGCGCCAGGAGGACATCGACAGGCTCACGGAACTCAGGCACAATCTCCG
AGACTTGCCGATGCAGCGCCAGTGCCACCGCTACCGCTGGACACAGACGG
AGACGACTTTCGACGTGGAGATCCCGATGCTGAAAGCCTGCAGAGACGAG
GACCTGTACCTCGTGGTGGAGAAGGACCAGATGCAGGTGGCCATCAAGAC
GGACGAGTCCTTCGGGGCAATAACGGGCGTGTTCCCTGGGGATGTGGATG
CAAGAAGCTGCAGCTTTCGGATCCACAGTCGGTTCAACGAACCCTACATT
CACCTGGAGATCGTGAAATTGACCGCGCCAGGTATGTACGAGTTTTGGCA
CGAGCTGCTGCAGGGCGAAGAGGAGAGCCCTACGATCCGCTTCAAAGGGG
AAACGCCGCGCTACCGCTGGAAGCAGAACGCCGAAACAATAGAGTTGCAG
ATCCCCGTCCCAGATGACGTGACAAAGCGGAAGACCACTCTCGACCTCGA
TCCTGCGGGAGACCGGATACACGTTTCCTTCCCGAACAGGCCGGACTTTG
AGCCCCTGGAGGGCAAGTTCAAGGGCCTCATTAGCCCCCTCGACTCCGTG
TGGATGCTGGACGAGAACGACGACGGGAAGATGCTGGCGCTGACCGTGAA
GAAACGAAGAGCTGCCCGAGACAAAACGGCTTGGTGGAGCGGTGTGCTGG
AGGGGGACGACAAATGGGAGCCATAG
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