mRNA_Ecto-sp13_S_contig7488.18675.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7488.18675.1
Unique NamemRNA_Ecto-sp13_S_contig7488.18675.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7488.18675.1 vs. uniprot
Match: D7FZD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD6_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.740e-37
Identity = 72/79 (91.14%), Postives = 73/79 (92.41%), Query Frame = 1 
Query:    1 MEPGEPAVDFLSRRLPRMRGGPLPAQEPRRTGQLGRDAAVLLDRDPSYLAMGLRQKTAATKRPVWAACHRLLRVRVELR 237
            MEPGEPAVDFLSRRLPRMRGGPLPA EPRRTGQLGRDAA LLDR PSYLAMG RQKTAAT+RPV A CHRLLRVRVELR
Sbjct:    1 MEPGEPAVDFLSRRLPRMRGGPLPALEPRRTGQLGRDAAALLDRGPSYLAMGPRQKTAATRRPVPATCHRLLRVRVELR 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7488.18675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZD6_ECTSI1.740e-3791.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7488contigEcto-sp13_S_contig7488:2995..4375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size435
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_004750.1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464017.6911697-CDS-Ecto-sp13_S_contig7488:2994..30851681464017.6911697-CDS-Ecto-sp13_S_contig7488:2994..3085Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7488 2995..3085 -
1681464017.7027118-CDS-Ecto-sp13_S_contig7488:3452..36111681464017.7027118-CDS-Ecto-sp13_S_contig7488:3452..3611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7488 3453..3611 -
1681464017.7144618-CDS-Ecto-sp13_S_contig7488:4190..43751681464017.7144618-CDS-Ecto-sp13_S_contig7488:4190..4375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7488 4191..4375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7488.18675.1prot_Ecto-sp13_S_contig7488.18675.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7488 2995..4375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7488.18675.1

>prot_Ecto-sp13_S_contig7488.18675.1 ID=prot_Ecto-sp13_S_contig7488.18675.1|Name=mRNA_Ecto-sp13_S_contig7488.18675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MEPGEPAVDFLSRRLPRMRGGPLPAQEPRRTGQLGRDAAVLLDRDPSYLA
MGLRQKTAATKRPVWAACHRLLRVRVELRRQHQRPPDRSQRPRRVRARLK
RRQEHLGQRRVSEQMRTQARASKSASPVLTESNWALNSSALSRSA
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mRNA from alignment at Ecto-sp13_S_contig7488:2995..4375-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7488.18675.1 ID=mRNA_Ecto-sp13_S_contig7488.18675.1|Name=mRNA_Ecto-sp13_S_contig7488.18675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7488:2995..4375- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACCGGGGGAGCCAGCGGTGGACTTTCTCAGCAGGCGCCTGCCGCG
AATGCGCGGCGGGCCGCTTCCAGCTCAGGAGCCTCGAAGGACGGGGCAGC
TAGGTCGGGACGCGGCGGTGCTGCTCGATCGCGACCCGTCGTACCTCGCG
ATGGGACTTCGGCAGAAGACGGCAGCAACAAAAAGGTGAGAGTGTGTCTT
GCCGCTCTACATGAGTAGCGGGCAAGAGTGGGGTCTGCGCGCAGACACCG
CGTGTACATTTCGCTGTTTCCGGGTACGAGACTGTGTGCTTCCTTACCTG
CTACCCTTCTTCACACCCCGGGATCAGCGCCCGGGGGGAAATTCTCGGAT
GATATTACGGTTCTGGCCGGAAGCTACTGCTGTAGACTCGACACAGCACT
CCTTTTTTTTCTTCCTTTTTGAATTTTTTGAATTTTGCCGGTCACGACGT
ACTTCCAGACTTCGCTAATACGTTGGTGGCATCGGGATGCTAGTATACAA
TAACCAACATTTATTGTAGGGTCGGTCTTCGAAATTATAGCGCAACAGTT
CTTCCCGTGTGTCTCGGGAGATTCAAAATGTCGGTGTTGACGCCGCGGTG
ATGATCAATATGTCCTGATTGCTTTGGACACATCTTCTGCCGTTGTGTAG
AGCTGCTGTGTTTTGAAAAGGTCGTGTAGTTTCCACCTCTTGGGAGGTTT
AGTTGCTTTTTTCGAAGAAGATTCTAACCCTCTTAATCTTGCGTACCAAT
ACTGTCTGGCGCAGGCCCGTTTGGGCGGCTTGCCACCGACTGCTCCGCGT
GCGGGTGGAACTTCGTCGGCAACACCAGCGTCCTCCCGACAGAAGTCAGA
GACCGCGGCGGGTAAGGGCTCGGCTCAAGAGGAGGCAGGAACATCTGGGC
CAAAGACGGGTGTCGGAGCAGATGTGTGGTTAAAGGTGTGTGTAGCTCGA
CGAGAAGGACATGTATGGATGTCCCGGCTGTGGGGCGTCCTCCTCCGATT
TCCTATTGCCGCCGTGGTGTTGTGTATCCTGTTCGTTCCTCATCTTGTGT
GTCCTGTTCGTTCCCCATCTGGAGTTCATTTTTTTGTATTTTTCTTTTTT
TTTGCGGAAGTTGTTAGGACAAAAGGTAGTTGGCTGCCCTGATTTTTTAC
GCATGGGTTGAGGTTGCTCAATGGATTCGAGCGCCAAGTTCCGGTGAGTC
GTTGTATCGGACCCACCATGACGCGTCGCTTCCGCTTGCGTGCCTGCCGC
CTTCCTTGTCCTTCTACCTCGTGCCATGTACCTTATCCAGGCGCACCCAA
GCACGGGCCTCAAAATCGGCGAGTCCCGTCTTGACGGAGTCCAATTGGGC
GTTGAACTCCTCAGCGCTGTCGCGGTCTGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7488:2995..4375-

>mRNA_Ecto-sp13_S_contig7488.18675.1 ID=mRNA_Ecto-sp13_S_contig7488.18675.1|Name=mRNA_Ecto-sp13_S_contig7488.18675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7488:2995..4375- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACCGGGGGAGCCAGCGGTGGACTTTCTCAGCAGGCGCCTGCCGCG
AATGCGCGGCGGGCCGCTTCCAGCTCAGGAGCCTCGAAGGACGGGGCAGC
TAGGTCGGGACGCGGCGGTGCTGCTCGATCGCGACCCGTCGTACCTCGCG
ATGGGACTTCGGCAGAAGACGGCAGCAACAAAAAGGCCCGTTTGGGCGGC
TTGCCACCGACTGCTCCGCGTGCGGGTGGAACTTCGTCGGCAACACCAGC
GTCCTCCCGACAGAAGTCAGAGACCGCGGCGGGTAAGGGCTCGGCTCAAG
AGGAGGCAGGAACATCTGGGCCAAAGACGGGTGTCGGAGCAGATGCGCAC
CCAAGCACGGGCCTCAAAATCGGCGAGTCCCGTCTTGACGGAGTCCAATT
GGGCGTTGAACTCCTCAGCGCTGTCGCGGTCTGCC
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