mRNA_Ecto-sp13_S_contig7487.18674.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7487.18674.1
Unique NamemRNA_Ecto-sp13_S_contig7487.18674.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7487.18674.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 7.310e-37
Identity = 80/100 (80.00%), Postives = 82/100 (82.00%), Query Frame = 3 
Query:    3 SIALLMTSSLEDGEDAAQIGNSFIDVLGLVTSKTAAMDFDAGSLSVSVPEGAINPTSVQGTRRRMTTSSSSPAGRIINGPLLQRRRMDLIATASAKIMIA 302
            S+ALLMTSSLEDGEDAA IGNSFIDVLGLVTSKTAAMDFDAGSLSVSVPEGAINPTSVQ             AGRIING +LQRRRMD IATASA I IA
Sbjct: 1118 SMALLMTSSLEDGEDAALIGNSFIDVLGLVTSKTAAMDFDAGSLSVSVPEGAINPTSVQRXXXXXXXXXXXXAGRIINGRILQRRRMDSIATASATITIA 1217
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7487.18674.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.850e-15
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 3 
Query:    3 SIALLMTSSLEDGEDAAQIGNSFIDVLGLVTSKTAAMDFDAGS-LSVSVPEGAINPTSVQGTRRRMTTSSSSPA 221
            S+ALLMTSSLEDGEDAA IGNSFIDVLGLVTSKT+AMDFDAG  +++S P       S+       TTSS SP+
Sbjct:  233 SMALLMTSSLEDGEDAALIGNSFIDVLGLVTSKTSAMDFDAGEDITLSAPVRMTMRASMA------TTSSKSPS 300
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7487.18674.1 vs. uniprot
Match: D7FLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ0_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.470e-13
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 3 
Query:    3 SIALLMTSSLEDGEDAAQIGNSFIDVLGLVTSKTAAMDFDAGSLSVS 143
            S+ALLMTS+LEDGEDAA IGNSFIDVLGLVTSKTAAMD  AG   +S
Sbjct:  176 SMALLMTSNLEDGEDAALIGNSFIDVLGLVTSKTAAMDLAAGYCPLS 222
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7487.18674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4X3_ECTSI7.310e-3780.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLT2_9PHAE2.850e-1564.86GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLQ0_ECTSI5.470e-1380.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7487contigEcto-sp13_S_contig7487:4293..4779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score136.3
Seed ortholog evalue7.2e-30
Seed eggNOG ortholog2880.D7G4X3
Model size303
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
Cds size285
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464017.6399393-CDS-Ecto-sp13_S_contig7487:4292..44681681464017.6399393-CDS-Ecto-sp13_S_contig7487:4292..4468Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7487 4293..4468 -
1681464017.6533768-CDS-Ecto-sp13_S_contig7487:4653..47621681464017.6533768-CDS-Ecto-sp13_S_contig7487:4653..4762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7487 4654..4762 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464017.6632214-UTR-Ecto-sp13_S_contig7487:4762..47791681464017.6632214-UTR-Ecto-sp13_S_contig7487:4762..4779Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7487 4763..4779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7487.18674.1prot_Ecto-sp13_S_contig7487.18674.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7487 4293..4762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7487.18674.1

>prot_Ecto-sp13_S_contig7487.18674.1 ID=prot_Ecto-sp13_S_contig7487.18674.1|Name=mRNA_Ecto-sp13_S_contig7487.18674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
MTSSLEDGEDAAQIGNSFIDVLGLVTSKTAAMDFDAGSLSVSVPEGAINP
TSVQGTRRRMTTSSSSPAGRIINGPLLQRRRMDLIATASAKIMIA
back to top

mRNA from alignment at Ecto-sp13_S_contig7487:4293..4779-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7487.18674.1 ID=mRNA_Ecto-sp13_S_contig7487.18674.1|Name=mRNA_Ecto-sp13_S_contig7487.18674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=487bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7487:4293..4779- (Ectocarpus species13 EcNAP12_S_4_19m)
AATCGATAGCGCTGCTCATGACATCAAGCCTGGAAGACGGAGAAGACGCG
GCCCAAATTGGGAACAGTTTCATTGATGTATTGGGCCTTGTCACCTCGAA
GACCGCGGCCATGGACTTCGACGCTGGTGAGAAGATGTCTCTCCTGCCTT
CATCAGTTGACACGGTCCAATGGCGCTAGACGAGGGGCGCGTGCTTTGCT
ATCGTCGGCAAGGAACATGGAGCGACACTAAACGGTTCTTTTTGCTACCC
CCATCCGTGCGAGCACTCAGAGGATCTGCTTGCTTTCCTCGACCACGTGC
CATTCGATCAGGTTCATTATCGGTATCTGTTCCTGAGGGTGCTATTAACC
CTACAAGCGTGCAAGGGACAAGAAGACGAATGACGACCTCATCCTCTAGT
CCAGCGGGTCGAATAATCAACGGTCCCCTTTTGCAACGACGCCGGATGGA
CTTGATCGCGACAGCGTCAGCCAAAATTATGATTGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7487:4293..4779-

>mRNA_Ecto-sp13_S_contig7487.18674.1 ID=mRNA_Ecto-sp13_S_contig7487.18674.1|Name=mRNA_Ecto-sp13_S_contig7487.18674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7487:4293..4779- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACATCAAGCCTGGAAGACGGAGAAGACGCGGCCCAAATTGGGAACAG
TTTCATTGATGTATTGGGCCTTGTCACCTCGAAGACCGCGGCCATGGACT
TCGACGCTGGTTCATTATCGGTATCTGTTCCTGAGGGTGCTATTAACCCT
ACAAGCGTGCAAGGGACAAGAAGACGAATGACGACCTCATCCTCTAGTCC
AGCGGGTCGAATAATCAACGGTCCCCTTTTGCAACGACGCCGGATGGACT
TGATCGCGACAGCGTCAGCCAAAATTATGATTGCC
back to top