mRNA_Ecto-sp13_S_contig7485.18672.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7485.18672.1
Unique NamemRNA_Ecto-sp13_S_contig7485.18672.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7485.18672.1 vs. uniprot
Match: D7FUW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUW0_ECTSI)

HSP 1 Score: 583 bits (1503), Expect = 4.430e-202
Identity = 384/493 (77.89%), Postives = 398/493 (80.73%), Query Frame = 1 
Query:    1 TAKASLRTDLQGLGLSSTPHPSSPYGRTGRTGVHDHRHARAQGGPDHDLNHSSYGESDCKLEIRFPXXXXXXXXXXXXXXXXXXXXXXXXCSSGVRRDYGGGVKDVGQLVRRVEASTTAVSREREHIAKILRIEKENTARLQEALRQEGGTKREWEMLTQASSLLKQRLESTERIRNRQKELIRELQAVEADIAFANAGNMAGLVSTDPLPNLSPPLPXXXXXXXXXXXXXXXXXXXXXXXXXXX--GNNTEHDHTVDERRVRRSRGSASDRARTPLGGKHGEQRRSPPTGTNSAKGDNFSAGRTATVELKDGGGGGG--TRLGRAAASASVRTLSRAAAVRPERPRRGGGPTDGATKSGISATGARKSSEGAVVSKAKRIQTGRTRSSIIDSSSVDTKARRAEVDRKSKSATTATAQSRXXXXXXXXXXXXXXXXRVLRRQASTKTKVRSGATFGAPTAASAGKIRTAPRRAVVSSGGRVGATKRAGDGCIP 1467
            TA+AS+RTDLQ LGLS+TPHPSSP GRTGRT VHDHRHARAQGGPDHDL HSS G +                                 CSSGVRRDYGGGV+DVG+LVRRVEAST AVSRE+EHIAKILRIEKE TARLQEAL QEGGTKREWEMLTQASSLLKQRLESTERIRNRQKELIRELQAVEADIAFANAGNMAG+VSTDPLPNLSPPLPXXXXXXXXXXXXXXXXXXXXXXXXXXX  GN+TE  H VDER  RRSRG ASDRARTPLGGKHGEQRRSPPTGT SAK ++F AG  A VEL+D        TRLGRAAASASVRT+ RAA VRPERPRR GGP DGATKSGISATGARKSSEGAV SKA+R QTGRT SSIIDSSS DTKARRAEVDRKSKSATT TAQSR                RVLRRQASTKTKV SGATFGAPTAASAGKIRT PRR VVS GG V ATKRAGDGCIP
Sbjct:   82 TAEASIRTDLQSLGLSATPHPSSPCGRTGRTEVHDHRHARAQGGPDHDLGHSSGGAAAAAS-----------------------------CSSGVRRDYGGGVRDVGELVRRVEASTRAVSREKEHIAKILRIEKEKTARLQEALWQEGGTKREWEMLTQASSLLKQRLESTERIRNRQKELIRELQAVEADIAFANAGNMAGMVSTDPLPNLSPPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDTERHHAVDERYGRRSRGGASDRARTPLGGKHGEQRRSPPTGTKSAKSNDFPAGCAAAVELEDXXXXXXXXTRLGRAAASASVRTVGRAATVRPERPRRSGGPADGATKSGISATGARKSSEGAVASKARRTQTGRTSSSIIDSSSADTKARRAEVDRKSKSATTTTAQSRHRAATSSTPAAAPSRNRVLRRQASTKTKVPSGATFGAPTAASAGKIRTTPRRPVVSPGGHVRATKRAGDGCIP 545
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7485.18672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUW0_ECTSI4.430e-20277.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7485contigEcto-sp13_S_contig7485:4468..7016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1570
Hectar predicted targeting categoryother localisation
Exons4
Cds size1098
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7485.18672.1prot_Ecto-sp13_S_contig7485.18672.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7485 4472..6240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464017.3932662-UTR-Ecto-sp13_S_contig7485:4467..44711681464017.3932662-UTR-Ecto-sp13_S_contig7485:4467..4471Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7485 4468..4471 -
1681464017.4594064-UTR-Ecto-sp13_S_contig7485:6240..63211681464017.4594064-UTR-Ecto-sp13_S_contig7485:6240..6321Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7485 6241..6321 -
1681464017.471026-UTR-Ecto-sp13_S_contig7485:6629..70161681464017.471026-UTR-Ecto-sp13_S_contig7485:6629..7016Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7485 6630..7016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464017.411819-CDS-Ecto-sp13_S_contig7485:4471..54971681464017.411819-CDS-Ecto-sp13_S_contig7485:4471..5497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7485 4472..5497 -
1681464017.4226625-CDS-Ecto-sp13_S_contig7485:5808..58681681464017.4226625-CDS-Ecto-sp13_S_contig7485:5808..5868Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7485 5809..5868 -
1681464017.442867-CDS-Ecto-sp13_S_contig7485:6228..62401681464017.442867-CDS-Ecto-sp13_S_contig7485:6228..6240Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7485 6229..6240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7485.18672.1

>prot_Ecto-sp13_S_contig7485.18672.1 ID=prot_Ecto-sp13_S_contig7485.18672.1|Name=mRNA_Ecto-sp13_S_contig7485.18672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=366bp
MLTQASSLLKQRLESTERIRNRQKELIRELQAVEADIAFANAGNMAGLVS
TDPLPNLSPPLPPPPPPLALPPTARRRKASSSSLLAHRRGNNTEHDHTVD
ERRVRRSRGSASDRARTPLGGKHGEQRRSPPTGTNSAKGDNFSAGRTATV
ELKDGGGGGGTRLGRAAASASVRTLSRAAAVRPERPRRGGGPTDGATKSG
ISATGARKSSEGAVVSKAKRIQTGRTRSSIIDSSSVDTKARRAEVDRKSK
SATTATAQSRHRAATSATPAVAPSRNRVLRRQASTKTKVRSGATFGAPTA
ASAGKIRTAPRRAVVSSGGRVGATKRAGDGCIPPSRAFACRPGQIKNVRG
RRRAASSRGDDNRTR*
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mRNA from alignment at Ecto-sp13_S_contig7485:4468..7016-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7485.18672.1 ID=mRNA_Ecto-sp13_S_contig7485.18672.1|Name=mRNA_Ecto-sp13_S_contig7485.18672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7485:4468..7016- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAGCAAAAGCCTCGCTTCGGACGGATCTCCAAGGCTTGGGCCTGTCCTC
AACGCCCCACCCTTCTTCCCCTTACGGTAGAACGGGACGAACCGGGGTCC
ACGACCACCGCCACGCCCGCGCCCAGGGTGGACCCGACCATGACTTAAAC
CACTCGAGCTACGGCGAAAGCGACTGCAAGTTGGAGATACGTTTCCCGCC
GCCCCCTCCGTCACAGCAGCATCACTCAAGTGCGTCCGGCTTTGGAAGCG
CTGCTGCTGCGGCCGCGAGTTGCAGCAGCGGCGTTCGGAGGGACTACGGT
GGCGGCGTGAAGGACGTCGGGCAGTTGGTGCGGCGGGTGGAGGCCTCGAC
GACAGCCGTGTCGCGAGAGAGAGAACACATCGCCAAGGTGCGGTGCCTCG
TCCTGCCAAAGCGTGACTGCTGCACTCGGTTACGTCGATACCGTTTTTTA
GGATGAATGGCGCCGCGACCCCTTTCAGCGATTTCGTTGCAACTCGATTC
GGTGGTTCGATGCTTGAGGCGGCGACTTAAATTCCGCGAGCAATAATCGT
TACGAAAGGACGGGAAAAGACACACTTGAAATAACCAGCACGCCGCCAGC
CTCCCCTGGCGTTATATATCGCGAAGTTGATCATCAGGGTGGATTCCTCT
ATGGTTCGTTTCCCGCTGTTGATACCATGCTTCTGTTCTGTGCAGATCCT
GCGAATAGAGAAAGAAAATACTGCCCGATTACAAGAAGCTCTTCGGCAGG
AAGGGGGAACGAAGCGCGAGTGGGAAATGCTCACACAGGTGAAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCCCTGAAAAGACCCGTGCGATGCCCTTGTGCAGGC
CTCTAGCTTGCTCAAACAACGGCTGGAATCGACGGAGCGAATCAGGAATC
GGCAAAAGGTACAACAGCAAGGCATCGTGCAGCAGTACATGACAAAAGTC
GCGTGTTTCTTGATGTTCTTCGCTTCTCTTCTCTCTACCCTCGCGCCTCT
GCTAAGTTACCGATCTCGTCAAGATAAGGATTGCCGCTTCCACGAGTTCG
AGGAGTTTCTTCCCCATTGAAGGCTTTCTTGACGAGACAAGCCGAAAGTA
TCATTCCCGCAGAACAGAAGACTACAGTATGCCATGCTAGGAAGCATGTC
GTTTCTTCTTGATCTTCGACAGCAGCCTACAAAGTGCCGGTGCTGTGCGT
TTCTTGGTTGTTCACCCAGGAGCTTATCAGAGAGTTGCAAGCTGTGGAGG
CCGACATAGCATTTGCTAACGCTGGGAACATGGCGGGACTGGTTTCGACG
GACCCCTTACCTAACCTGTCGCCACCACTACCCCCACCACCACCACCATT
GGCGCTGCCGCCCACCGCACGACGAAGGAAAGCTTCGTCCTCATCTCTGC
TGGCGCATCGCCGAGGCAACAACACCGAACACGACCATACCGTCGACGAG
AGACGCGTTAGGCGGTCGAGAGGGAGCGCGTCTGATAGGGCTAGGACCCC
CCTGGGAGGAAAGCACGGAGAGCAGCGGCGGTCGCCACCCACAGGGACTA
ATTCGGCCAAAGGTGATAACTTCTCCGCTGGACGTACTGCTACCGTGGAA
TTGAAGGACGGCGGCGGCGGCGGCGGGACTAGGCTAGGACGAGCAGCGGC
GTCGGCATCAGTCAGGACACTTAGTAGGGCCGCCGCCGTGCGGCCGGAGC
GGCCCCGGCGGGGCGGCGGCCCGACCGACGGTGCCACGAAGAGCGGCATC
AGCGCCACGGGGGCAAGGAAATCGAGCGAGGGAGCGGTGGTAAGCAAGGC
CAAGAGAATACAAACAGGACGTACCCGTAGCAGCATCATAGACTCTTCCT
CGGTAGACACAAAGGCGAGGAGGGCGGAGGTCGACCGTAAATCGAAATCG
GCAACGACGGCGACGGCCCAGTCGCGGCACAGGGCCGCCACCTCTGCAAC
ACCAGCGGTGGCACCGTCTCGGAACCGCGTGCTTCGCCGACAGGCATCAA
CGAAGACAAAGGTTCGGTCAGGAGCGACGTTTGGGGCACCGACGGCAGCG
AGCGCTGGCAAGATCCGAACAGCACCACGAAGGGCGGTGGTGTCGTCGGG
AGGCCGCGTCGGTGCCACCAAGCGAGCTGGCGACGGTTGTATCCCGCCTT
CAAGGGCGTTCGCTTGTCGCCCAGGCCAAATAAAAAACGTCCGAGGGAGG
CGGCGGGCAGCTTCTTCACGAGGCGACGACAACCGCACTCGCTGATGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7485:4468..7016-

>mRNA_Ecto-sp13_S_contig7485.18672.1 ID=mRNA_Ecto-sp13_S_contig7485.18672.1|Name=mRNA_Ecto-sp13_S_contig7485.18672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1098bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7485:4468..7016- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCACACAGGCCTCTAGCTTGCTCAAACAACGGCTGGAATCGACGGA
GCGAATCAGGAATCGGCAAAAGGAGCTTATCAGAGAGTTGCAAGCTGTGG
AGGCCGACATAGCATTTGCTAACGCTGGGAACATGGCGGGACTGGTTTCG
ACGGACCCCTTACCTAACCTGTCGCCACCACTACCCCCACCACCACCACC
ATTGGCGCTGCCGCCCACCGCACGACGAAGGAAAGCTTCGTCCTCATCTC
TGCTGGCGCATCGCCGAGGCAACAACACCGAACACGACCATACCGTCGAC
GAGAGACGCGTTAGGCGGTCGAGAGGGAGCGCGTCTGATAGGGCTAGGAC
CCCCCTGGGAGGAAAGCACGGAGAGCAGCGGCGGTCGCCACCCACAGGGA
CTAATTCGGCCAAAGGTGATAACTTCTCCGCTGGACGTACTGCTACCGTG
GAATTGAAGGACGGCGGCGGCGGCGGCGGGACTAGGCTAGGACGAGCAGC
GGCGTCGGCATCAGTCAGGACACTTAGTAGGGCCGCCGCCGTGCGGCCGG
AGCGGCCCCGGCGGGGCGGCGGCCCGACCGACGGTGCCACGAAGAGCGGC
ATCAGCGCCACGGGGGCAAGGAAATCGAGCGAGGGAGCGGTGGTAAGCAA
GGCCAAGAGAATACAAACAGGACGTACCCGTAGCAGCATCATAGACTCTT
CCTCGGTAGACACAAAGGCGAGGAGGGCGGAGGTCGACCGTAAATCGAAA
TCGGCAACGACGGCGACGGCCCAGTCGCGGCACAGGGCCGCCACCTCTGC
AACACCAGCGGTGGCACCGTCTCGGAACCGCGTGCTTCGCCGACAGGCAT
CAACGAAGACAAAGGTTCGGTCAGGAGCGACGTTTGGGGCACCGACGGCA
GCGAGCGCTGGCAAGATCCGAACAGCACCACGAAGGGCGGTGGTGTCGTC
GGGAGGCCGCGTCGGTGCCACCAAGCGAGCTGGCGACGGTTGTATCCCGC
CTTCAAGGGCGTTCGCTTGTCGCCCAGGCCAAATAAAAAACGTCCGAGGG
AGGCGGCGGGCAGCTTCTTCACGAGGCGACGACAACCGCACTCGCTGA
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