mRNA_Ecto-sp13_S_contig7478.18666.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7478.18666.1
Unique NamemRNA_Ecto-sp13_S_contig7478.18666.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7478.18666.1 vs. uniprot
Match: A0A6H5LAP0_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAP0_9PHAE)

HSP 1 Score: 432 bits (1111), Expect = 2.620e-146
Identity = 226/301 (75.08%), Postives = 253/301 (84.05%), Query Frame = 1
Query:    1 MLKEEGKGRGTSSFQPMKWGIKDGQSGSAVYRRHEHGPTFGAGHDLHLCWNGAASTVKTNNSTYDVPAGSLFLQLNRRSLVDVETFRVCPTPTCTLPLAKQEHHAGESISAPTAPVRTSDDVPTFGHLIAGSLMEAEMTLQDAGIELSLANARTTACATALAAVYGPDVANGEEEDVVELSVRGTEMTTLRSTLRICLNSALAARFDEDKWPAGKKDIDSNGRRVIDCKPSVFSKVLDVLRMAKRARWAGGEDLQGMNETPRVTIKAGDRLAFEEFVDMYFEGCESFIMEHVSLLGDEAAT 903
            +LK+EGKG  +S+F PMKWG+K+G +  AV      GP FG   DL + WNG  STV T+NSTYDVPAGS FLQLN R L+D+E FRVC  PT TLPLAKQEH AGE  + PTAPVRTSDDVPTFG LIA SLMEAEM LQDAGIEL+LA ARTTACATALAAVYGPDVA+G++EDVVELSVRGT MTTLRSTLR+C +SALAARFDE KWPA KKD+DS+GRR+IDC+P+VFSKVLDVLR+AKRA WAGGE+LQGM ET RVTIK GDR+AFEEFVDMYF+GCESFIM HV L GDEA T
Sbjct:  285 ILKDEGKG--SSTFPPMKWGVKNGLAAKAV--NQGCGPCFGEC-DLKVNWNGNMSTVGTDNSTYDVPAGSHFLQLNGRHLLDIEAFRVCSKPTHTLPLAKQEHRAGEGTNTPTAPVRTSDDVPTFGQLIADSLMEAEMVLQDAGIELALAKARTTACATALAAVYGPDVASGQQEDVVELSVRGTAMTTLRSTLRVCPDSALAARFDEGKWPAAKKDLDSDGRRMIDCRPAVFSKVLDVLRIAKRAAWAGGENLQGMKET-RVTIKPGDRVAFEEFVDMYFKGCESFIMAHVCLPGDEADT 579          
BLAST of mRNA_Ecto-sp13_S_contig7478.18666.1 vs. uniprot
Match: D7FIX7_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX7_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 1.280e-120
Identity = 192/301 (63.79%), Postives = 223/301 (74.09%), Query Frame = 1
Query:    1 MLKEEGKGRGTSSFQPMKWGIKDGQSGSAVYRRHEHGPTFGAGHDLHLCWNGAASTVKTNNSTYDVPAGSLFLQLNRRSLVDVETFRVCPTPTCTLPLAKQEHHAGESISAPTAPVRTSDDVPTFGHLIAGSLMEAEMTLQDAGIELSLANARTTACATALAAVYGPDVANGEEEDVVELSVRGTEMTTLRSTLRICLNSALAARFDEDKWPAGKKDIDSNGRRVIDCKPSVFSKVLDVLRMAKRARWAGGEDLQGMNET----PRVTIKAGDRLAFEEFVDMYFEGCESFIMEHVSLLGD 891
            MLK+ G+GR +  +Q  KWG+KDG+S  AVYR   +GP FG G DLH+ WNG  S V+T N TY  P GS F +LN   LVDVETFRV P P       KQE HA E  + P APV+T+DDV +FG L+A SLME E  LQ+A  ELSLA ART ACATA+AAVYGP+VA G E+DVVEL+VRGT MTTLRSTLRIC +SALAA F+E++WP  +KD+DSNGRR+IDCKPSVFSKVLDVLR+AKRA WA  E+    NE     PRVTIKAGD  AFEEFVDMYF  CE+F+MEHV LL D
Sbjct:  224 MLKD-GEGRHSGVYQSTKWGVKDGRSAYAVYRGQGYGPCFGEGRDLHVVWNGTESAVRTGNQTYHAPTGSPFPELNGCRLVDVETFRVGPKPNTPTSSTKQEDHAVEDKTGPGAPVKTADDVRSFGDLVADSLMEEEKLLQEAANELSLAKARTMACATAVAAVYGPEVATGTEDDVVELNVRGTRMTTLRSTLRICPDSALAAWFNEEQWPVAEKDLDSNGRRIIDCKPSVFSKVLDVLRIAKRAAWARSEEGPVRNEKRRVKPRVTIKAGDCAAFEEFVDMYFPCCETFMMEHVDLLDD 523          
BLAST of mRNA_Ecto-sp13_S_contig7478.18666.1 vs. uniprot
Match: D7FIX8_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX8_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 1.240e-99
Identity = 150/168 (89.29%), Postives = 156/168 (92.86%), Query Frame = 1
Query:  400 MEAEMTLQDAGIELSLANARTTACATALAAVYGPDVANGEEEDVVELSVRGTEMTTLRSTLRICLNSALAARFDEDKWPAGKKDIDSNGRRVIDCKPSVFSKVLDVLRMAKRARWAGGEDLQGMNETPRVTIKAGDRLAFEEFVDMYFEGCESFIMEHVSLLGDEAAT 903
            MEAEM LQ+AGIELS A ARTTACATALAAVYGPDVANG+EEDVVELSVRGTEM TLRSTLRIC +SALAARFDEDKWPA KKD+DSNGRRVIDCKPSVFSKVLDVLRMAKR RWA  E L+GMNETPRVTIKAGDR AFEEFVDMYF+GCESFIMEHVSLLGDE AT
Sbjct:    1 MEAEMVLQEAGIELSPAKARTTACATALAAVYGPDVANGQEEDVVELSVRGTEMMTLRSTLRICPSSALAARFDEDKWPAAKKDVDSNGRRVIDCKPSVFSKVLDVLRMAKRVRWADDEKLEGMNETPRVTIKAGDRFAFEEFVDMYFKGCESFIMEHVSLLGDETAT 168          
BLAST of mRNA_Ecto-sp13_S_contig7478.18666.1 vs. uniprot
Match: A0A6H5JD55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD55_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 1.780e-87
Identity = 160/262 (61.07%), Postives = 187/262 (71.37%), Query Frame = 1
Query:  133 DLHLCWN-GAASTVKTNNSTYDVPAGSLFLQLNRRSLVDVETFRVCPT-PTCTLPLAKQEHHAGESISAPTAPVRTS---DDVPTFGHLIAGSLMEAEMTLQDAGIELSLANARTTACATALAAVYGPDVANG-EEEDVVELSVRGTEMTTLRSTLRICLNSALAARFDEDKWPAGKKDIDSNGRRVIDCKPSVFSKVLDVLRMAKRARWAGGEDLQGMNETPRVTIKAGDRLAFEEFVDMYFEGCESFIMEHVSLLGDEAA 900
            DL + W  GAASTV+T N T DV A S  L LN R +VD+ETFR+C   PT  L  AK +HH    I+ PTAPVR+       P FG LIA +LME E+ LQ+A  EL++A ARTTACATAL  VYGPDVA G EEEDVVELSV GT +T + STLR+C  S  A +F ED+WPA KKD+D NGRRVIDC+PSVFSKV+D+LR    A WA G+D Q  N+TPRVTIK  DR  FEEFVD+YF+GCES IME+V  LGDE A
Sbjct:  209 DLRVVWKVGAASTVQTKNLTQDVQAESRLLALNGRGVVDIETFRLCYCRPTDALSSAKPKHHFIGDIAVPTAPVRSRLLRMSFP-FGRLIADALME-EIVLQEANNELAVAEARTTACATALVVVYGPDVAKGREEEDVVELSVCGTRVTRMCSTLRVCPGSTFATQFLEDRWPATKKDLDDNGRRVIDCEPSVFSKVMDILR----ASWARGDDDQEANKTPRVTIKPCDRAEFEEFVDIYFKGCESLIMEYVESLGDEEA 464          
BLAST of mRNA_Ecto-sp13_S_contig7478.18666.1 vs. uniprot
Match: A0A6H5JQU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU4_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 2.680e-80
Identity = 154/271 (56.83%), Postives = 169/271 (62.36%), Query Frame = 1
Query:   88 VYRRHEHGPTFGAGHDLHLCWNGAASTVKTNNSTYDVPAGSLFLQLNRRSLVDVETFRVCPTPTCTLPLAKQEHHAGESISAPTAPVRTSDDVPTFGHLIAGSLMEAEMTLQDAGIELSLANARTTACATALAAVYGPDVANGEEEDVVELSVRGTEMTTLRSTLRICLNSALAARFDEDKWPAGKKDIDSNGRRVIDCKPSVFSKVLDVLRMAKRARWAGGEDLQGMNETPRVTIKAGDRLAFEEFVDMYFEGCESFIMEHVSLLGDEAA 900
            V R    GPTFG GHDL   WN   +T KT N TYDVP GS FLQLN   +VD+ETFRVCP PT T   AK                         G+L           L             TT  ATALAAVY PD+A G E D +ELSVRGT MTTLRSTLR+C +SALA RFDEDKWPA KKD+DSNGRRVIDCKP+VFSKVLDVLRMA RA WAG E  Q +NE PRVT+K GDR+AFEEFV M F GCES I++ V L  DE A
Sbjct:  184 VDRGQAFGPTFGGGHDLKENWNRTKTTPKTGNYTYDVPVGSPFLQLNGCPIVDIETFRVCPKPTNTSSSAK-------------------------GNLTPYKTQWRRRHL-------------TTTYATALAAVYCPDMAMGLEVDFMELSVRGTRMTTLRSTLRVCPDSALATRFDEDKWPAAKKDLDSNGRRVIDCKPAVFSKVLDVLRMATRASWAGSEKSQQVNEKPRVTMKVGDRVAFEEFVGMNFPGCESCILDFVDLRHDEEA 416          
BLAST of mRNA_Ecto-sp13_S_contig7478.18666.1 vs. uniprot
Match: D7G2H5_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H5_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 4.760e-69
Identity = 139/301 (46.18%), Postives = 179/301 (59.47%), Query Frame = 1
Query:    1 MLKEEGKGRGTSSFQPMKWGIKDGQSGSAVYRRHEHGPTFGAGHDLHLCWNGAAS-TVKTNNSTYDVPAGSLFLQLNRRSLVDVETFRVCPTPTCTLPLAKQ--------EHHAGESISAPTAPVRTSDDVPTFGHLIAGSLMEAEMTLQDAGIELSLANARTTACATALAAVYGPDVANGEEEDVVELSVRGTEMTTLRSTLRICLNSALAARFDEDKWPAGKKDIDSNGRRVIDCKPSVFSKVLDVLRMAKRARWAGGEDLQGMNETPRVTIKAGDRLAFEEFVDMYFEGCESFIMEHV 876
            MLK+   G G +SFQP+KWG +D   G  V      GP FG   DL + +N     T++    +YDVP+GS F  LN +++ ++E F+V      T   +K+         H A  + S  TA    + D  TFG+ IAG+LME  + L  A  EL  A+++  A   ALAAVYGP+VA G  + VVELSVRGT MTTLRSTL+ C  SALAA F+EDKWP   KD+D  GRR+I+C P+VF KVLDVLRM KRA WA  +      E   V + A DR AF+ FV+MYF G E+FI + V
Sbjct:  253 MLKDSDMG-GPNSFQPVKWGKRDNNGGCDVVVGASRGPYFGRT-DLVVNFNNYFPVTLQAQPYSYDVPSGSTFPNLNGQTITEIEVFQVYSAAATTSSPSKRLKIQGPEDTHGAVSTSSTNTASREANSDAETFGNAIAGALMEERIALHQAEAELEQAHSKAAASGDALAAVYGPEVARGAIDTVVELSVRGTRMTTLRSTLQACRESALAALFNEDKWPPTDKDVDEQGRRLINCSPAVFQKVLDVLRMRKRAAWAASD-----RELAHVRVDAADRPAFDSFVNMYFPGFENFITDMV 546          
BLAST of mRNA_Ecto-sp13_S_contig7478.18666.1 vs. uniprot
Match: D7FIV0_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV0_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 1.200e-60
Identity = 138/299 (46.15%), Postives = 166/299 (55.52%), Query Frame = 1
Query:   37 SFQPMKWGIK-DGQSGSAVYRRHEHGPTFGAGH--DLHLCWNGAASTVKTNNSTYDVPAGSLFLQLNRRSLVDVETFRVCPT--------PTCTLPLAKQEHHAGESISAPTAPVRTSDDVPTFGHLIAGSLMEAEMTLQDAGIELSLANARTTACATALAAVYGPDVANGEEEDVVELSVRGTE----MTTLRSTLRICLNSALAARFDEDKWPAGKKDIDSNGRRVI-DCKPSVFSKVLDVLRMAKRARWAGGEDLQGMNETPRVTIKAGDRLAFEEFVDMYFEGCESFIMEHVSLL 885
            +FQP  WG++      S  Y   + G  FG G   DL + W     T+   N  Y VP G  F++L  R++ DVE FRV  T        PT T  +    +    ++SA        +DV  FG  IAGSL +    L  A  EL  AN    A   ALAAVYGP  A G ++ +VELSVRG+     MTTL STL+ C  SALAARFDE KWP  +KD D++GRRV+ DC PSVFSKVLDVLRM KR  WAG +   G      V IK  DR  FEEFV+MYF GCESFIM+ V  L
Sbjct:  243 NFQPAIWGLRIRNPKPSGAYDMEKFGLIFGRGRIFDLSVVWTN--QTLVAGNQVYAVPPGFQFIRLGGRAIADVEVFRVRQTMGTLPTTPPTVTGLIDCAAYFEASAMSAE----EHENDVYRFGTSIAGSLKDERAALHTAQRELVQANTMAAASLKALAAVYGPHTAAGVKDPIVELSVRGSRTTERMTTLLSTLQACPESALAARFDEAKWPVTEKDKDAHGRRVMKDCSPSVFSKVLDVLRMKKREAWAGDDGKMGA--AVLVAIKDADRAPFEEFVNMYFPGCESFIMDSVKFL 533          
BLAST of mRNA_Ecto-sp13_S_contig7478.18666.1 vs. uniprot
Match: A0A6H5L232_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L232_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 9.920e-58
Identity = 124/292 (42.47%), Postives = 161/292 (55.14%), Query Frame = 1
Query:    1 MLKEEGKGRGTSSFQPMKWGIKDGQSGSAVYRRHEHGPTFGAGHDLHLCWNGAASTVKTNNSTYDVPAGSLFLQLNRRSLVDVETFRVCPTPTCTLPLAKQEHHAGESISAPTAPVRTSDDVPTFGHLIAGSLMEAEMTLQDAGIELSLANARTTACATALAAVYGPDVANGEEEDVVELSVRGTEMTTLRSTLRICLNSALAARFDEDKWPAGKKDIDSNGRRVIDCKPSVFSKVLDVLRMAKRARWAGGEDLQGMNETPRVTIKAGDRLAFEEFVDMYFEGCESFIMEHV 876
            MLK+   G G +SFQP+KW  +D   G  V      GP FG   DL + +     T++    +YDVP+   F  LN +++ ++E F+V                                      + IAG+LME  + L  A  EL  A+++      ALAAVYGP+VA G  + VVELSVRGT MTTLRSTLR C  SALAA F+EDKWPA  KD+D  GRR+I+C P+VF KVLDVLRM KRA WA  +      E+  V + A DR AF+ FV+M+F G E+FI + V
Sbjct:  275 MLKDSDMG-GPNSFQPVKWSKRDNNGGYDVVVGASRGPFFGRT-DLVVNFTYVPVTLQAQPYSYDVPSVPAFPNLNGQTITEIEVFQV-----------------------------------NICNAIAGALMEERIALYQAEAELEHAHSKAAVSGRALAAVYGPEVARGAIDTVVELSVRGTRMTTLRSTLRACRESALAALFNEDKWPATDKDVDEQGRRLINCSPAVFQKVLDVLRMRKRAAWAASD-----RESAHVRVDAADRPAFDSFVNMFFPGFENFITDMV 524          
BLAST of mRNA_Ecto-sp13_S_contig7478.18666.1 vs. uniprot
Match: A0A6H5JCR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR8_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 9.330e-56
Identity = 140/301 (46.51%), Postives = 170/301 (56.48%), Query Frame = 1
Query:    1 MLKEEGKGRGTSSFQPMKWGIKDGQSGSAVYRRHEHGPTFGAGHDLHLCWNGAASTVKTNNSTYDVPAGSLFLQLNRRSLVDVETFRVCPTP-TCTLPLAKQEHHAGESISAPTAPVRTSDDVPTFGHLIAGSLMEAEMTLQDAGIELSLANARTTACATALAAVYGPDVANGEEEDVVELSVRG---TE-MTTLRSTLRICLNSALAARFDEDKWPAGKKDIDSNGRRVI-DCKPSVFSKVLDVLRMAKRARWAGGEDLQGMNETPRVTIKAGDRLAFEEFVDMYFEGCESFIMEHVSLL 885
            MLK+  +G  + + QP KWG K G +G  V  R E GP      D  +C +        +   YD+P    FL    R +VD+E FRV PT  T T  +    +     +SA        +DV  FG  IAGSL +    L  A  EL  AN    A   ALAAVYGP++A G E+ VVELSVRG   TE MTTL STL+ C  SALAARFDE KWP   K+ D++GRRVI DC P VF+KVLDVLRM KR  WA  +D + +     V IKA DR  FE+FV+MYF  CESFIM+ V  L
Sbjct:  242 MLKDGNEG--SDAVQPSKWGPKVGYTGQVVDGRTE-GPV-----DWVMCLH---RMFTVHCGIYDIPTEHPFLYHMGREVVDIEVFRVLPTSLTVTGLIDCAAYFKCSDMSAE----EHENDVYRFGMSIAGSLRDERAALHTAQRELVKANTIAAASVEALAAVYGPNIAAGVEDRVVELSVRGPRKTERMTTLLSTLQACPESALAARFDEAKWPVTDKEKDAHGRRVIKDCSPLVFAKVLDVLRMKKREAWA--DDDKKVRAAVLVAIKAADRAPFEKFVNMYFPACESFIMDSVKFL 525          
BLAST of mRNA_Ecto-sp13_S_contig7478.18666.1 vs. uniprot
Match: D7FIX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX5_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 6.430e-49
Identity = 115/288 (39.93%), Postives = 153/288 (53.12%), Query Frame = 1
Query:   40 FQPMKWGIKDGQSGSAVYRRHEHG-----PTFGAGHDLHLCWNGAAS-TVKTNNSTYDVPAGSLFLQLNRRSLVDVETFRVCPTPTCTLPLAKQEHHAGESISAPTAPVRTSDDVPTFGHLIAGSLMEAEMTLQDAGIELSLANARTTACATALAAVYGPDVANGEEEDVVELSVRGTEMTTLRSTLRICLNSALAARFDEDKWPAGKKDIDSNGRRVIDCKPSVFSKVLDVLRMAKRARWAGGEDL---QGMNETPRVTIKAGDRLAFEEFVDMYFEGCESFIMEHV 876
            F+P+KWG+K G  G+A+    +       P FG  HD+ + ++     T+ T   TYDV   S FL LN   ++DVE F V   P      A  E  + +    P      ++    FG  IA  LME  M L  A +EL  A AR    A AL  +YGP VA GEE+ VVEL+VRG  +TTL  TL  C +S  AA   E +W  GK  +D +GR  ++C PS FSK+LDV+RM KRA WA  +++    G  +T RV +   DR  FE+ V MYF  C  F+M+ V
Sbjct:  107 FEPVKWGVKSGSQGNALSCCRDSSSQSFRPCFG-NHDMRVDFHPTTGCTLSTGRGTYDVDGESTFLALNGGLVLDVEVFEVRSVPEQVETPASSEIMSWDQ-HIPVDQSLAAEYTLEFGESIADLLMEELMALAYARVELDEAAARARTVARALCVIYGPHVARGEEDPVVELNVRGRSITTLYWTLHACTDSVFAAWLAE-RWSGGK-GVDEDGRYKVNCDPSCFSKILDVMRMRKRAGWAEDDEIVKNAGGGDTIRVRVSEADRENFEDAVKMYFPNCTRFVMDLV 390          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7478.18666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5LAP0_9PHAE2.620e-14675.08TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIX7_ECTSI1.280e-12063.79BTB_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FIX8_ECTSI1.240e-9989.29BTB_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JD55_9PHAE1.780e-8761.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQU4_9PHAE2.680e-8056.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2H5_ECTSI4.760e-6946.18TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIV0_ECTSI1.200e-6046.15TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L232_9PHAE9.920e-5842.47TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JCR8_9PHAE9.330e-5646.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIX5_ECTSI6.430e-4939.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7478contigEcto-sp13_S_contig7478:636..1544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score80.5
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog2880.D8LMI2
Preferred nameKCTD18
Model size909
KEGG koko:K21917,ko:K21921
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein homooligomerization
EggNOG OGsKOG2723@1,KOG2723@2759
Ec32 ortholog descriptionBTB/POZ fold
Ec32 orthologEc-07_007750.1
Cds size909
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464016.6895351-CDS-Ecto-sp13_S_contig7478:635..15441681464016.6895351-CDS-Ecto-sp13_S_contig7478:635..1544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7478 636..1544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7478.18666.1prot_Ecto-sp13_S_contig7478.18666.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7478 636..1544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7478.18666.1

>prot_Ecto-sp13_S_contig7478.18666.1 ID=prot_Ecto-sp13_S_contig7478.18666.1|Name=mRNA_Ecto-sp13_S_contig7478.18666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=303bp
MLKEEGKGRGTSSFQPMKWGIKDGQSGSAVYRRHEHGPTFGAGHDLHLCW
NGAASTVKTNNSTYDVPAGSLFLQLNRRSLVDVETFRVCPTPTCTLPLAK
QEHHAGESISAPTAPVRTSDDVPTFGHLIAGSLMEAEMTLQDAGIELSLA
NARTTACATALAAVYGPDVANGEEEDVVELSVRGTEMTTLRSTLRICLNS
ALAARFDEDKWPAGKKDIDSNGRRVIDCKPSVFSKVLDVLRMAKRARWAG
GEDLQGMNETPRVTIKAGDRLAFEEFVDMYFEGCESFIMEHVSLLGDEAA
TH*
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mRNA from alignment at Ecto-sp13_S_contig7478:636..1544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7478.18666.1 ID=mRNA_Ecto-sp13_S_contig7478.18666.1|Name=mRNA_Ecto-sp13_S_contig7478.18666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7478:636..1544- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCAAGGAGGAAGGAAAAGGAAGGGGAACGAGCTCCTTTCAACCGAT GAAGTGGGGCATCAAGGACGGGCAGTCCGGCTCCGCCGTGTATCGTCGGC ACGAACATGGACCCACATTTGGGGCAGGACACGACCTACACCTGTGCTGG AATGGAGCCGCGAGCACGGTCAAAACGAACAACTCCACGTATGATGTGCC GGCCGGGTCTCTTTTTCTTCAACTGAACAGGCGTTCCCTCGTGGATGTCG AGACTTTTCGTGTTTGCCCTACGCCGACATGTACCCTCCCTTTGGCCAAG CAAGAACATCACGCGGGAGAAAGCATAAGCGCACCGACAGCACCTGTGAG GACTAGTGACGATGTCCCTACCTTTGGACATTTGATTGCTGGCTCGTTGA TGGAAGCGGAGATGACGCTGCAAGACGCCGGCATTGAACTTTCCCTTGCC AACGCCCGGACGACCGCATGCGCAACGGCCTTGGCGGCGGTATACGGACC GGACGTGGCAAACGGAGAAGAGGAGGACGTTGTGGAGCTGAGCGTACGTG GGACAGAAATGACGACTCTGCGCTCCACCCTGAGGATTTGCCTTAACTCG GCCCTTGCCGCTCGGTTCGACGAGGACAAATGGCCGGCGGGGAAGAAAGA TATCGACAGCAATGGGCGTCGTGTGATCGACTGTAAGCCGTCCGTCTTCT CAAAGGTACTCGACGTACTCCGCATGGCAAAGCGTGCGCGATGGGCTGGT GGCGAGGATCTCCAGGGAATGAACGAGACACCTCGCGTTACCATCAAGGC CGGCGACCGCTTGGCGTTTGAAGAATTTGTGGACATGTACTTCGAGGGCT GCGAAAGCTTCATCATGGAGCACGTCAGTCTTCTTGGCGACGAGGCGGCC ACTCACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7478:636..1544-

>mRNA_Ecto-sp13_S_contig7478.18666.1 ID=mRNA_Ecto-sp13_S_contig7478.18666.1|Name=mRNA_Ecto-sp13_S_contig7478.18666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7478:636..1544- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCAAGGAGGAAGGAAAAGGAAGGGGAACGAGCTCCTTTCAACCGAT
GAAGTGGGGCATCAAGGACGGGCAGTCCGGCTCCGCCGTGTATCGTCGGC
ACGAACATGGACCCACATTTGGGGCAGGACACGACCTACACCTGTGCTGG
AATGGAGCCGCGAGCACGGTCAAAACGAACAACTCCACGTATGATGTGCC
GGCCGGGTCTCTTTTTCTTCAACTGAACAGGCGTTCCCTCGTGGATGTCG
AGACTTTTCGTGTTTGCCCTACGCCGACATGTACCCTCCCTTTGGCCAAG
CAAGAACATCACGCGGGAGAAAGCATAAGCGCACCGACAGCACCTGTGAG
GACTAGTGACGATGTCCCTACCTTTGGACATTTGATTGCTGGCTCGTTGA
TGGAAGCGGAGATGACGCTGCAAGACGCCGGCATTGAACTTTCCCTTGCC
AACGCCCGGACGACCGCATGCGCAACGGCCTTGGCGGCGGTATACGGACC
GGACGTGGCAAACGGAGAAGAGGAGGACGTTGTGGAGCTGAGCGTACGTG
GGACAGAAATGACGACTCTGCGCTCCACCCTGAGGATTTGCCTTAACTCG
GCCCTTGCCGCTCGGTTCGACGAGGACAAATGGCCGGCGGGGAAGAAAGA
TATCGACAGCAATGGGCGTCGTGTGATCGACTGTAAGCCGTCCGTCTTCT
CAAAGGTACTCGACGTACTCCGCATGGCAAAGCGTGCGCGATGGGCTGGT
GGCGAGGATCTCCAGGGAATGAACGAGACACCTCGCGTTACCATCAAGGC
CGGCGACCGCTTGGCGTTTGAAGAATTTGTGGACATGTACTTCGAGGGCT
GCGAAAGCTTCATCATGGAGCACGTCAGTCTTCTTGGCGACGAGGCGGCC
ACTCACTGA
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