mRNA_Ecto-sp13_S_contig7472.18659.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7472.18659.1
Unique NamemRNA_Ecto-sp13_S_contig7472.18659.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: D7FK70_ECTSI (tRNA-splicing endonuclease positive effector n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK70_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 3.480e-57
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 1
Query:    1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSESGGE 291
            +GD  QLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTP GFPWPAASGPVAFVRVSESGGE
Sbjct:  491 VGDQNQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPAGFPWPAASGPVAFVRVSESGGE 587          
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: A0A2E8NQ48_9EURY (AAA domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E8NQ48_9EURY)

HSP 1 Score: 119 bits (299), Expect = 2.360e-29
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSESGGE 291
            IGD +QLPPTVI   AE GGLG SLF RL+  GI+PI+L RQYRMHP I++FP+  FYDG++  G+  SDRP+P G  WP    P+AF+ V   GGE
Sbjct:  402 IGDHKQLPPTVISRRAEQGGLGRSLFERLIEMGIEPIMLTRQYRMHPGIAEFPNAQFYDGELVDGVTTSDRPSPTGVLWPDWENPIAFLPVE--GGE 496          
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: A0A835Z7U9_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U9_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.560e-29
Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSE 279
            +GD  QLPPT++   A  GGL TSLF+RLM AG+ P++L RQYRMHP I+ FP   FY G++ +  RA DRPTP GFPWP A+ PVAFV V +
Sbjct:   64 VGDQNQLPPTILSRGAAAGGLATSLFARLMLAGVAPVVLARQYRMHPRIAAFPGARFYGGRLASAPRAVDRPTPRGFPWPNAAVPVAFVAVRD 156          
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: A0A6H5L473_9PHAE (AAA_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L473_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 8.200e-29
Identity = 65/100 (65.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSESGGEREK 300
            IGD  QLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNR                                P GFPWPAASGPVAFVRVSESGGEREK
Sbjct:  496 IGDGPQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRLI------------------------------PAGFPWPAASGPVAFVRVSESGGEREK 565          
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: A0A7S3QXL8_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QXL8_DUNTE)

HSP 1 Score: 116 bits (290), Expect = 1.510e-28
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    4 GDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSESGGER 294
            GD +QLPPTV+  +A   GL  +LF R+  +G+ P+LL+ QYRMHPAIS FPS HFY GQ+  G++ASD+P P+GFPWP    PVAFV V     ER
Sbjct:  170 GDPQQLPPTVVSQKALSYGLDVTLFDRVAASGVTPLLLDTQYRMHPAISAFPSQHFYGGQLRDGVQASDKPIPLGFPWPVPQLPVAFVEVEHGREER 266          
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: A0A7S0SFR9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SFR9_9CHLO)

HSP 1 Score: 107 bits (268), Expect = 2.480e-28
Identity = 51/100 (51.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:    1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSESGGEREK 300
            +GD RQLPPTVI P A   GLG SLF RL   G+KP LL+RQYRMHPA++ FPS  FY G+V++      RP P G  WP+  G V    V   GG+ ++
Sbjct:    5 VGDARQLPPTVISPAAAGAGLGCSLFERLERLGLKPDLLDRQYRMHPALAQFPSAAFYGGRVSSDPTPQSRPLPAGLDWPSPRGAVPLAFVEVDGGQEQR 104          
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: L8GCE7_ACACA (Putative DNA helicase n=2 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GCE7_ACACA)

HSP 1 Score: 116 bits (290), Expect = 4.660e-28
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRV 273
            +GD  QLPPTV  PEA+ GGL  SLF+R++  GI+P +L  QYRMHP IS+FPS+HFY G++  GI A+ RP+P G  WP+   P+AFV V
Sbjct:  530 LGDHYQLPPTVTSPEAQQGGLSESLFARMIAMGIEPYMLEIQYRMHPIISEFPSVHFYGGKIKDGIVAAQRPSPTGIAWPSEGNPIAFVNV 620          
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: A0A7R9TTW1_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TTW1_MICPS)

HSP 1 Score: 115 bits (288), Expect = 8.030e-28
Identity = 55/95 (57.89%), Postives = 67/95 (70.53%), Query Frame = 1
Query:    1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSESG 285
            +GD +QLPPTV C +A + GL TSLF RL + G+KP LL+ Q+RMHPA+S FPS  FYDG+V +G  A DRP P GF WP A  P+AFV V   G
Sbjct:  387 VGDHKQLPPTVTCRDAGNAGLSTSLFDRLANMGVKPKLLDVQFRMHPALSRFPSDAFYDGRVKSGTLARDRPAPSGFAWPNAGVPIAFVPVGVPG 481          
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: C1MZS9_MICPC (tRNA-splicing endonuclease positive effector n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MZS9_MICPC)

HSP 1 Score: 115 bits (288), Expect = 8.560e-28
Identity = 55/95 (57.89%), Postives = 67/95 (70.53%), Query Frame = 1
Query:    1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSESG 285
            +GD +QLPPTV C +A + GL TSLF RL + G+KP LL+ Q+RMHPA+S FPS  FYDG+V +G  A DRP P GF WP A  P+AFV V   G
Sbjct:  723 VGDHKQLPPTVTCRDAGNAGLSTSLFDRLANMGVKPKLLDVQFRMHPALSRFPSDAFYDGRVKSGTLARDRPAPSGFAWPNAGVPIAFVPVGVPG 817          
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: A0A7C8CTZ9_9ARCH (AAA domain-containing protein n=2 Tax=Archaea TaxID=2157 RepID=A0A7C8CTZ9_9ARCH)

HSP 1 Score: 114 bits (285), Expect = 2.010e-27
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRV 273
            +GD RQLP TVI   AE GGLG SLF RL+ AGI P++L  QYRMHP + DFPS  FYDG++  G+ A +RP P GF WP    PVAF+ +
Sbjct:  423 VGDHRQLPATVISLRAERGGLGRSLFERLIEAGITPMMLQTQYRMHPVLKDFPSGRFYDGRLEDGVSAKERPAPAGFIWPDWDAPVAFIPI 513          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK70_ECTSI3.480e-5795.88tRNA-splicing endonuclease positive effector n=1 T... [more]
A0A2E8NQ48_9EURY2.360e-2957.73AAA domain-containing protein n=1 Tax=Euryarchaeot... [more]
A0A835Z7U9_9STRA2.560e-2958.06AAA domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A6H5L473_9PHAE8.200e-2965.00AAA_11 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3QXL8_DUNTE1.510e-2855.67Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A7S0SFR9_9CHLO2.480e-2851.00Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
L8GCE7_ACACA4.660e-2856.04Putative DNA helicase n=2 Tax=Acanthamoeba castell... [more]
A0A7R9TTW1_MICPS8.030e-2857.89Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
C1MZS9_MICPC8.560e-2857.89tRNA-splicing endonuclease positive effector n=2 T... [more]
A0A7C8CTZ9_9ARCH2.010e-2757.14AAA domain-containing protein n=2 Tax=Archaea TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7472contigEcto-sp13_S_contig7472:6537..7417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score199.9
Seed ortholog evalue5.7e-49
Seed eggNOG ortholog2880.D7FK70
Model size306
KEGG koko:K14326
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsCOG1112@1,KOG1802@2759
Cds size306
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464016.2680805-CDS-Ecto-sp13_S_contig7472:6536..67201681464016.2680805-CDS-Ecto-sp13_S_contig7472:6536..6720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7472 6537..6720 -
1681464016.2790878-CDS-Ecto-sp13_S_contig7472:7295..74171681464016.2790878-CDS-Ecto-sp13_S_contig7472:7295..7417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7472 7296..7417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7472.18659.1prot_Ecto-sp13_S_contig7472.18659.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7472 6537..7417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7472.18659.1

>prot_Ecto-sp13_S_contig7472.18659.1 ID=prot_Ecto-sp13_S_contig7472.18659.1|Name=mRNA_Ecto-sp13_S_contig7472.18659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAIS
DFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSESGGEREK
C*
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mRNA from alignment at Ecto-sp13_S_contig7472:6537..7417-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7472.18659.1 ID=mRNA_Ecto-sp13_S_contig7472.18659.1|Name=mRNA_Ecto-sp13_S_contig7472.18659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=881bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7472:6537..7417- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGGTGATGATCGACAGCTCCCGCCCACGGTGATCTGCCCCGAGGCAGA AGACGGCGGCCTTGGGACTAGCCTCTTCTCCAGGCTGATGCACGCCGGGA TCAAGCCCATCCTCCTCAACAGGTACGTCTTTTTCAGCGACTACGCGACC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCGTCTTTTTTTTTTTGTTC CCCTCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCTTTCCTGCGGCGCCCC CATCTCCCTCTTGATTCTCCGGAAAGAGCGTTGGCCGAAATCGGGTACGT ACACACCCGGTTCGAACATGGCTAAGATCGGGTATCCCTCCCAATGTGGC ACGCCGCTGCTGGCAGCGACCGCATGACGCCATCGGATTGGCCGACACTC GCCCCTTCCTACCAGCTGCGTGTTATGTTACACGGAAGGGCATACCCGAT TTTGTCCATGTCCGGGCCGGGTCTGGTTCACGCACGAGACACAAAGACAC ATATCTCGTTGGGCTTCCTCTATGCTGGTGTTGTTGTTGTCTTCACATAA AAAACCGTTCCGTTTCTCTCTGCCCAGTACCTTCTCATGTCCGTACTAGT CCAACACTTGACGGGGTCGATTCCCGCGATCATAGACGTACTACCCCAAA AATATGCGCGACAATAACACAACGATGGCGCCCCCCCCTTGCAACAGGCA ATACCGAATGCACCCGGCAATCTCGGACTTTCCGTCTCTCCACTTCTACG ACGGACAAGTCACGACGGGGATACGCGCGTCAGACAGACCCACGCCGGTC GGGTTCCCTTGGCCTGCGGCGTCTGGCCCCGTGGCCTTCGTGCGCGTCAG CGAGAGCGGGGGTGAGAGAGAGAAGTGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7472:6537..7417-

>mRNA_Ecto-sp13_S_contig7472.18659.1 ID=mRNA_Ecto-sp13_S_contig7472.18659.1|Name=mRNA_Ecto-sp13_S_contig7472.18659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7472:6537..7417- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGGTGATGATCGACAGCTCCCGCCCACGGTGATCTGCCCCGAGGCAGA
AGACGGCGGCCTTGGGACTAGCCTCTTCTCCAGGCTGATGCACGCCGGGA
TCAAGCCCATCCTCCTCAACAGGCAATACCGAATGCACCCGGCAATCTCG
GACTTTCCGTCTCTCCACTTCTACGACGGACAAGTCACGACGGGGATACG
CGCGTCAGACAGACCCACGCCGGTCGGGTTCCCTTGGCCTGCGGCGTCTG
GCCCCGTGGCCTTCGTGCGCGTCAGCGAGAGCGGGGGTGAGAGAGAGAAG
TGTTAG
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