mRNA_Ecto-sp13_S_contig7472.18659.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: D7FK70_ECTSI (tRNA-splicing endonuclease positive effector n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK70_ECTSI) HSP 1 Score: 197 bits (502), Expect = 3.480e-57 Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 1
Query: 1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSESGGE 291
+GD QLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTP GFPWPAASGPVAFVRVSESGGE
Sbjct: 491 VGDQNQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPAGFPWPAASGPVAFVRVSESGGE 587
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: A0A2E8NQ48_9EURY (AAA domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E8NQ48_9EURY) HSP 1 Score: 119 bits (299), Expect = 2.360e-29 Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 1
Query: 1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSESGGE 291
IGD +QLPPTVI AE GGLG SLF RL+ GI+PI+L RQYRMHP I++FP+ FYDG++ G+ SDRP+P G WP P+AF+ V GGE
Sbjct: 402 IGDHKQLPPTVISRRAEQGGLGRSLFERLIEMGIEPIMLTRQYRMHPGIAEFPNAQFYDGELVDGVTTSDRPSPTGVLWPDWENPIAFLPVE--GGE 496
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: A0A835Z7U9_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U9_9STRA) HSP 1 Score: 116 bits (291), Expect = 2.560e-29 Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 1
Query: 1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSE 279
+GD QLPPT++ A GGL TSLF+RLM AG+ P++L RQYRMHP I+ FP FY G++ + RA DRPTP GFPWP A+ PVAFV V +
Sbjct: 64 VGDQNQLPPTILSRGAAAGGLATSLFARLMLAGVAPVVLARQYRMHPRIAAFPGARFYGGRLASAPRAVDRPTPRGFPWPNAAVPVAFVAVRD 156
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: A0A6H5L473_9PHAE (AAA_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L473_9PHAE) HSP 1 Score: 118 bits (295), Expect = 8.200e-29 Identity = 65/100 (65.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query: 1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSESGGEREK 300
IGD QLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNR P GFPWPAASGPVAFVRVSESGGEREK
Sbjct: 496 IGDGPQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRLI------------------------------PAGFPWPAASGPVAFVRVSESGGEREK 565
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: A0A7S3QXL8_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QXL8_DUNTE) HSP 1 Score: 116 bits (290), Expect = 1.510e-28 Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 1
Query: 4 GDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSESGGER 294
GD +QLPPTV+ +A GL +LF R+ +G+ P+LL+ QYRMHPAIS FPS HFY GQ+ G++ASD+P P+GFPWP PVAFV V ER
Sbjct: 170 GDPQQLPPTVVSQKALSYGLDVTLFDRVAASGVTPLLLDTQYRMHPAISAFPSQHFYGGQLRDGVQASDKPIPLGFPWPVPQLPVAFVEVEHGREER 266
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: A0A7S0SFR9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SFR9_9CHLO) HSP 1 Score: 107 bits (268), Expect = 2.480e-28 Identity = 51/100 (51.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query: 1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSESGGEREK 300
+GD RQLPPTVI P A GLG SLF RL G+KP LL+RQYRMHPA++ FPS FY G+V++ RP P G WP+ G V V GG+ ++
Sbjct: 5 VGDARQLPPTVISPAAAGAGLGCSLFERLERLGLKPDLLDRQYRMHPALAQFPSAAFYGGRVSSDPTPQSRPLPAGLDWPSPRGAVPLAFVEVDGGQEQR 104
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: L8GCE7_ACACA (Putative DNA helicase n=2 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GCE7_ACACA) HSP 1 Score: 116 bits (290), Expect = 4.660e-28 Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 1
Query: 1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRV 273
+GD QLPPTV PEA+ GGL SLF+R++ GI+P +L QYRMHP IS+FPS+HFY G++ GI A+ RP+P G WP+ P+AFV V
Sbjct: 530 LGDHYQLPPTVTSPEAQQGGLSESLFARMIAMGIEPYMLEIQYRMHPIISEFPSVHFYGGKIKDGIVAAQRPSPTGIAWPSEGNPIAFVNV 620
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: A0A7R9TTW1_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TTW1_MICPS) HSP 1 Score: 115 bits (288), Expect = 8.030e-28 Identity = 55/95 (57.89%), Postives = 67/95 (70.53%), Query Frame = 1
Query: 1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSESG 285
+GD +QLPPTV C +A + GL TSLF RL + G+KP LL+ Q+RMHPA+S FPS FYDG+V +G A DRP P GF WP A P+AFV V G
Sbjct: 387 VGDHKQLPPTVTCRDAGNAGLSTSLFDRLANMGVKPKLLDVQFRMHPALSRFPSDAFYDGRVKSGTLARDRPAPSGFAWPNAGVPIAFVPVGVPG 481
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: C1MZS9_MICPC (tRNA-splicing endonuclease positive effector n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MZS9_MICPC) HSP 1 Score: 115 bits (288), Expect = 8.560e-28 Identity = 55/95 (57.89%), Postives = 67/95 (70.53%), Query Frame = 1
Query: 1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRVSESG 285
+GD +QLPPTV C +A + GL TSLF RL + G+KP LL+ Q+RMHPA+S FPS FYDG+V +G A DRP P GF WP A P+AFV V G
Sbjct: 723 VGDHKQLPPTVTCRDAGNAGLSTSLFDRLANMGVKPKLLDVQFRMHPALSRFPSDAFYDGRVKSGTLARDRPAPSGFAWPNAGVPIAFVPVGVPG 817
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Match: A0A7C8CTZ9_9ARCH (AAA domain-containing protein n=2 Tax=Archaea TaxID=2157 RepID=A0A7C8CTZ9_9ARCH) HSP 1 Score: 114 bits (285), Expect = 2.010e-27 Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1
Query: 1 IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPVGFPWPAASGPVAFVRV 273
+GD RQLP TVI AE GGLG SLF RL+ AGI P++L QYRMHP + DFPS FYDG++ G+ A +RP P GF WP PVAF+ +
Sbjct: 423 VGDHRQLPATVISLRAERGGLGRSLFERLIEAGITPMMLQTQYRMHPVLKDFPSGRFYDGRLEDGVSAKERPAPAGFIWPDWDAPVAFIPI 513 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7472.18659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7472.18659.1 >prot_Ecto-sp13_S_contig7472.18659.1 ID=prot_Ecto-sp13_S_contig7472.18659.1|Name=mRNA_Ecto-sp13_S_contig7472.18659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp IGDDRQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISback to top mRNA from alignment at Ecto-sp13_S_contig7472:6537..7417- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7472.18659.1 ID=mRNA_Ecto-sp13_S_contig7472.18659.1|Name=mRNA_Ecto-sp13_S_contig7472.18659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=881bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7472:6537..7417- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7472:6537..7417- >mRNA_Ecto-sp13_S_contig7472.18659.1 ID=mRNA_Ecto-sp13_S_contig7472.18659.1|Name=mRNA_Ecto-sp13_S_contig7472.18659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7472:6537..7417- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |