prot_Ecto-sp13_S_contig7470.18658.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7470.18658.1
Unique Nameprot_Ecto-sp13_S_contig7470.18658.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length268
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7470.18658.1 vs. uniprot
Match: D8LEC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC3_ECTSI)

HSP 1 Score: 508 bits (1307), Expect = 2.230e-181
Identity = 258/267 (96.63%), Postives = 260/267 (97.38%), Query Frame = 0 
Query:    1 MVLWLRGVAVLLALLSCSTTNAGRSTAGSSDPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYLTGVSVTKAQDLYRKTAPTEPLARLTVTGSALIKQRLPSGGAMIDTGNKTVGININHASRRAQFRFTRAFMDGRFKVGLNPVVTYGPLRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPSISPLHGLGVALRLHTGRRALLSATLFDGTDRSRLWSVRADVPLAKPCNTCFTAERAWQVPTTNNGAR 267
            MVLW  GVAVLLALLSCSTTNAGRST GS DPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYLTGVSVTKAQDLYRKTAPTEPLARLT+TGSALIKQRLPSGGAMIDTGNKTVGININHA+RRAQFRFTRAFMDGRFKVGLNPVVTYG LRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPSISPLHGLGVALRLHTGRRALLSATLFDGTDRSRLWSVRADVPLAKP NTCFTAERAWQVPTTN GAR
Sbjct:    1 MVLWRWGVAVLLALLSCSTTNAGRSTGGSGDPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYLTGVSVTKAQDLYRKTAPTEPLARLTLTGSALIKQRLPSGGAMIDTGNKTVGININHAARRAQFRFTRAFMDGRFKVGLNPVVTYGALRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPSISPLHGLGVALRLHTGRRALLSATLFDGTDRSRLWSVRADVPLAKPSNTCFTAERAWQVPTTNTGAR 267
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BLAST of mRNA_Ecto-sp13_S_contig7470.18658.1 vs. uniprot
Match: A0A6H5J9R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9R3_9PHAE)

HSP 1 Score: 382 bits (982), Expect = 2.220e-132
Identity = 190/195 (97.44%), Postives = 192/195 (98.46%), Query Frame = 0 
Query:   73 VSVTKAQDLYRKTAPTEPLARLTVTGSALIKQRLPSGGAMIDTGNKTVGININHASRRAQFRFTRAFMDGRFKVGLNPVVTYGPLRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPSISPLHGLGVALRLHTGRRALLSATLFDGTDRSRLWSVRADVPLAKPCNTCFTAERAWQVPTTNNGAR 267
            VSVTKAQDLYRKTAPTEPLARLT+TGSALIKQRLPSGGAMIDTGNKTVGININHASRRAQFRFTRAFMDGRFKVGLNPVVTYG LRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPSISPL+GLGVALRLHTGRRALLSATLFDGTDRSRLWSVRADVPLAKP NTCFTAERAWQVPTTN GAR
Sbjct:   40 VSVTKAQDLYRKTAPTEPLARLTLTGSALIKQRLPSGGAMIDTGNKTVGININHASRRAQFRFTRAFMDGRFKVGLNPVVTYGALRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPSISPLNGLGVALRLHTGRRALLSATLFDGTDRSRLWSVRADVPLAKPSNTCFTAERAWQVPTTNTGAR 234
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BLAST of mRNA_Ecto-sp13_S_contig7470.18658.1 vs. uniprot
Match: A0A6H5JDN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN2_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.870e-34
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0 
Query:    1 MVLWLRGVAVLLALLSCSTTNAGRSTAGSSDPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYLTG 72
            MVLW  GVA LLALLSCSTTNAGRSTAGS+DPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYLTG
Sbjct:    1 MVLWRWGVAGLLALLSCSTTNAGRSTAGSNDPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYLTG 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7470.18658.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEC3_ECTSI2.230e-18196.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9R3_9PHAE2.220e-13297.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDN2_9PHAE3.870e-3494.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..267
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..17
score: 5.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.802

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7470contigEcto-sp13_S_contig7470:3453..6728 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7470.18658.1mRNA_Ecto-sp13_S_contig7470.18658.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7470 3367..7245 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7470.18658.1 ID=prot_Ecto-sp13_S_contig7470.18658.1|Name=mRNA_Ecto-sp13_S_contig7470.18658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=268bp
MVLWLRGVAVLLALLSCSTTNAGRSTAGSSDPMDLLSSVSGTYTHFVDDD
LSVTVSYDLQDDSSIPFSYLTGVSVTKAQDLYRKTAPTEPLARLTVTGSA
LIKQRLPSGGAMIDTGNKTVGININHASRRAQFRFTRAFMDGRFKVGLNP
VVTYGPLRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPS
ISPLHGLGVALRLHTGRRALLSATLFDGTDRSRLWSVRADVPLAKPCNTC
FTAERAWQVPTTNNGAR*
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