mRNA_Ecto-sp13_S_contig7470.18658.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7470.18658.1
Unique NamemRNA_Ecto-sp13_S_contig7470.18658.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7470.18658.1 vs. uniprot
Match: D8LEC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC3_ECTSI)

HSP 1 Score: 509 bits (1311), Expect = 1.240e-178
Identity = 258/267 (96.63%), Postives = 260/267 (97.38%), Query Frame = 3 
Query:   87 MVLWLRGVAVLLALLSCSTTNAGRSTAGSSDPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYLTGVSVTKAQDLYRKTAPTEPLARLTVTGSALIKQRLPSGGAMIDTGNKTVGININHASRRAQFRFTRAFMDGRFKVGLNPVVTYGPLRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPSISPLHGLGVALRLHTGRRALLSATLFDGTDRSRLWSVRADVPLAKPCNTCFTAERAWQVPTTNNGAR 887
            MVLW  GVAVLLALLSCSTTNAGRST GS DPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYLTGVSVTKAQDLYRKTAPTEPLARLT+TGSALIKQRLPSGGAMIDTGNKTVGININHA+RRAQFRFTRAFMDGRFKVGLNPVVTYG LRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPSISPLHGLGVALRLHTGRRALLSATLFDGTDRSRLWSVRADVPLAKP NTCFTAERAWQVPTTN GAR
Sbjct:    1 MVLWRWGVAVLLALLSCSTTNAGRSTGGSGDPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYLTGVSVTKAQDLYRKTAPTEPLARLTLTGSALIKQRLPSGGAMIDTGNKTVGININHAARRAQFRFTRAFMDGRFKVGLNPVVTYGALRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPSISPLHGLGVALRLHTGRRALLSATLFDGTDRSRLWSVRADVPLAKPSNTCFTAERAWQVPTTNTGAR 267
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BLAST of mRNA_Ecto-sp13_S_contig7470.18658.1 vs. uniprot
Match: A0A6H5J9R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9R3_9PHAE)

HSP 1 Score: 382 bits (981), Expect = 4.760e-129
Identity = 190/195 (97.44%), Postives = 192/195 (98.46%), Query Frame = 3 
Query:  303 VSVTKAQDLYRKTAPTEPLARLTVTGSALIKQRLPSGGAMIDTGNKTVGININHASRRAQFRFTRAFMDGRFKVGLNPVVTYGPLRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPSISPLHGLGVALRLHTGRRALLSATLFDGTDRSRLWSVRADVPLAKPCNTCFTAERAWQVPTTNNGAR 887
            VSVTKAQDLYRKTAPTEPLARLT+TGSALIKQRLPSGGAMIDTGNKTVGININHASRRAQFRFTRAFMDGRFKVGLNPVVTYG LRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPSISPL+GLGVALRLHTGRRALLSATLFDGTDRSRLWSVRADVPLAKP NTCFTAERAWQVPTTN GAR
Sbjct:   40 VSVTKAQDLYRKTAPTEPLARLTLTGSALIKQRLPSGGAMIDTGNKTVGININHASRRAQFRFTRAFMDGRFKVGLNPVVTYGALRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPSISPLNGLGVALRLHTGRRALLSATLFDGTDRSRLWSVRADVPLAKPSNTCFTAERAWQVPTTNTGAR 234
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BLAST of mRNA_Ecto-sp13_S_contig7470.18658.1 vs. uniprot
Match: A0A6H5JDN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN2_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 4.360e-33
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 3 
Query:   87 MVLWLRGVAVLLALLSCSTTNAGRSTAGSSDPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYLTG 302
            MVLW  GVA LLALLSCSTTNAGRSTAGS+DPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYLTG
Sbjct:    1 MVLWRWGVAGLLALLSCSTTNAGRSTAGSNDPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYLTG 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7470.18658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEC3_ECTSI1.240e-17896.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9R3_9PHAE4.760e-12997.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDN2_9PHAE4.360e-3394.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7470contigEcto-sp13_S_contig7470:3367..7245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1407
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_001710.1
Cds size804
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7470.18658.1prot_Ecto-sp13_S_contig7470.18658.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7470 3453..6728 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464016.1603906-UTR-Ecto-sp13_S_contig7470:3366..34521681464016.1603906-UTR-Ecto-sp13_S_contig7470:3366..3452Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7470 3367..3452 +
1681464016.21669-UTR-Ecto-sp13_S_contig7470:6728..72451681464016.21669-UTR-Ecto-sp13_S_contig7470:6728..7245Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7470 6729..7245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464016.1744862-CDS-Ecto-sp13_S_contig7470:3452..36671681464016.1744862-CDS-Ecto-sp13_S_contig7470:3452..3667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7470 3453..3667 +
1681464016.1856048-CDS-Ecto-sp13_S_contig7470:5007..51171681464016.1856048-CDS-Ecto-sp13_S_contig7470:5007..5117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7470 5008..5117 +
1681464016.194459-CDS-Ecto-sp13_S_contig7470:5868..60881681464016.194459-CDS-Ecto-sp13_S_contig7470:5868..6088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7470 5869..6088 +
1681464016.2043407-CDS-Ecto-sp13_S_contig7470:6469..67281681464016.2043407-CDS-Ecto-sp13_S_contig7470:6469..6728Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7470 6470..6728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7470.18658.1

>prot_Ecto-sp13_S_contig7470.18658.1 ID=prot_Ecto-sp13_S_contig7470.18658.1|Name=mRNA_Ecto-sp13_S_contig7470.18658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=268bp
MVLWLRGVAVLLALLSCSTTNAGRSTAGSSDPMDLLSSVSGTYTHFVDDD
LSVTVSYDLQDDSSIPFSYLTGVSVTKAQDLYRKTAPTEPLARLTVTGSA
LIKQRLPSGGAMIDTGNKTVGININHASRRAQFRFTRAFMDGRFKVGLNP
VVTYGPLRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPS
ISPLHGLGVALRLHTGRRALLSATLFDGTDRSRLWSVRADVPLAKPCNTC
FTAERAWQVPTTNNGAR*
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mRNA from alignment at Ecto-sp13_S_contig7470:3367..7245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7470.18658.1 ID=mRNA_Ecto-sp13_S_contig7470.18658.1|Name=mRNA_Ecto-sp13_S_contig7470.18658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7470:3367..7245+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGACAGGCCATCCGCATGCCTGCAGCAGCAGTAGAGACATACGGGAATAA
AGACAGAAACAAAGAGGGGGGCCGAACGTTCAAGAGATGGTGCTTTGGCT
ACGGGGAGTAGCGGTGCTGCTGGCTTTGCTCTCTTGTAGCACCACCAACG
CCGGGAGGTCTACTGCTGGGAGCAGTGACCCTATGGATCTCCTGAGCAGC
GTGTCCGGCACATACACGCACTTCGTTGACGACGATTTGTCCGTTACGGT
CAGCTACGACTTGCAGGACGACTCCAGCATACCGTTCAGCTACCTCACCG
GGTAAGGATTGGTAGATAGGAGAACGGCTGGGCGTAGTCCTAAGGTTGGT
TTCTTAGTGGTGAGCAGTATGATACAAAAACATCCCTGTTGCTGCGTACG
CCCTACCAGCGATGCAGCTGCATCGCACCATTGCTCTCCGTACACGCAAA
GCTAAACATGAAGTTGCAGAACATGCACATTGTGCTAGAGTCGTCTACAT
CATCGTTCACTCGTTTCCTACCACCTTTCATCAAGGGCGTGGCGAAGTTG
TGCCGAGCTCCTCAAGAAAACTCAAGGGAAAAAGGAGTCACATGATCCGA
AATTCAAATTCCGCTCAGAGGCAGCAGTTCAAAAAGTGTGTGGGTACTAC
TGTTCAATGTGCACACATTTGTTTCCATACCCGCTCGTACTTCATGACAT
CACAAACGAATGAGCAAGAGGATGGTGTCATGGTTAGGGCCTGCTTTCCG
TTAAAAGTTGGGCAAGTTCTGTCTCGCTGCACATTACCCTTCTATTGGTT
TCGACACCGCACATACCGGGAAGCAACCTCCGCAGCTACCCAACCAGCGC
GAAAATTTGAACCGCTCACAAAGAATCAGTACAGCACAGATTATTTCCGG
GCAGAGGGCAGTGGGCGAAGTGTGTGGGTGCCGCACGGTCAGTGTACCAC
GTGCGGTCCAGTCTGGGGCAACGACAACACGAGCTAAGCTCATGATCGGG
GGTGCGAAGCAATCCAATTTGCCATTTTTTTTTCTCCACACAACACCAAC
GTCCCACTTTTTCGGGCAGCAAAAGCCTCCTCGTATATCTCGCTGTTGAC
CAATCACCGTCTTCGGCCCCCGGTATCCCTCTCCAACTTAGGTTTTGCAG
GGCCTCTATTTGGGTGAAAATAGTACCAAGCGTTACACGGCCTCAAAAGG
ACGTTTGTTGGTTATTTTTTATTTTCAGTTTTGGAAATGCCATTAACAGT
CGTTCATCGAGAAGCACAACGAGCCACGTGTATTTGCCTCGTACTCGTTG
GATTGAGCACCGCCGTTTCTTCTGCCTCTCGACGAAGAACAAATCCCATG
CACGTTTTTTCCGGTTTTGGACTTTCTTCCCTCCGCTTCGGGAGAAAATT
GCGTGCAGACGAGAGGAAGGCCCTTGTGACAAAACAAGTATGTAGAAACC
GACTGAAAATAGAGAGGCAGAAAATACCGACTTCCGACCACATCTTATCT
CCAAGCGGTCCTCTCTCCCGTATGATCCGATAGCGCCGAAAGCAGCGAGT
GCAGTCGTCATTGTCGTGCTGTCATTGTACCACCCGATAACCTTGTGCGC
TTGGTCGCCGTGTTGTGGTTTCCGCCGCTGTACGCGAACAGAGTGTCGGT
GACGAAAGCCCAAGACCTGTATCGAAAGACCGCACCTACGGAGCCCCTGG
CGAGGCTCACGGTCACCGGCTCCGCCCTCATCAAGCAGCGGTTACCATCC
GGTGCGTGAGCGAACATCCTCTTCCTCTTGTCCACGGATTCCAGGTGTTT
TGCCAATTTGTGCTTTCGTTCATCAGCACATGGTCCACCACTGTGTGGGT
GTTGCACCCTACATGGTATAGAACGTTGGCACATCCGTACCCATGGCTGG
TATACGCGTTTTTTTTTGTTTGAAATATTCCGCCAGATCGTTTGGGCAGG
GGTTCAGTTGGCTTTACAGGTATCTTGAATAGAGCAAACTACAACAGACC
CGTTCCCGCGAAAACTCTGAACGCGACGATGGGTGTGTGTAAATGCCCGC
CCAACTGCCGGGTGCGTTTTGTGTTGAGACCAATCGGGTAGTAAGCATGG
AATGCCGGGCGCCGTTCGCCACCGTCAACTTATCAATCTCTCTCCCGCAG
AGTGGTTTGTTTCAGTTAGGTTCATGCCCGGCAATGTCAGTGCTCTTCCA
TGCCAATCAATCGCTGTGGACCAAGGACCTTTGCCTCAGTATCAACCTTG
GGCGGGGAGCACCTGAGCTGATGGTGGTTTCACGGGGTCCTCACCGTTAC
ATCTTTGACCGTTGTAGGATTCCCACCTCCTGTGGGTGTGTGCTGCAGCC
CGGCTTTCAACAAGACTTTTGGATTCGGCGAAGCCAAATTTTCATCTCGA
TGTGGCTGTTTGCCTTACGTTGAAGTCGGTCGGGGAACTTGTGAGCGTCG
TATCTTACCCCCGCCGTCGATCGTGGTGGTGTCGGTCATCTTTTGCTTGC
AGGGGGCGCCATGATCGACACGGGCAACAAGACGGTGGGCATCAATATTA
ACCACGCCTCACGGCGAGCGCAGTTCCGCTTCACTAGAGCGTTCATGGAT
GGGCGGTTCAAAGTGGGTCTCAACCCCGTCGTGACGTACGGCCCGCTACG
AAGACGGAGAGTGAACTTCAGCACCTTGGTGCCGCCGTACCGTCCATTTC
TCTCGGAGTCAGGATTGCCGAGGTATTCGTACATATGATTACTGCAGTAA
TAGATACTGACGGCCGGCGGCGATTGCATGCTCTTCGCTTTGGTTGTTGT
GGTTGATAAGAGTGATGAACCGCTCCGTTCGCTGCGTGTTTGTTATGTAC
CTTCGTATGCTACATTCCCATGTCGTGGCCTGTTGTTACTGCTCTCTGTT
TTTCGAGCACCTAGGCGGCGAGGTGTTCCTCTGGGGTGTTATTGTTCGAT
TGGCGCCTGTTCTCTTTCGCCGGTTTCTCCGTTTTCGCTATACCACACGG
AGCACAGCATGAAGATTGACGCACGTCGTATTTCACTACTTCCGATGCTC
ACGTTCGCGCCTACTGCACGCCCCGCCCCGCTGCACCACGTGTGTACACT
CAGCATGTCGTTGCAGCAGCGGAGCGTCGTATGGGACTGGGCCCAGGGGA
TGCCATCGATATCCCCCCTTCACGGGCTGGGGGTTGCCCTACGCCTGCAT
ACAGGCCGGAGGGCATTGTTGAGCGCCACCCTGTTCGACGGCACGGACCG
TTCCAGGTTGTGGTCGGTGCGGGCGGATGTCCCCTTAGCGAAGCCGTGCA
ACACTTGCTTCACGGCTGAGCGCGCATGGCAGGTGCCAACGACGAACAAC
GGGGCGCGATGACGGGGGCATTTTTAGGTGTGTCGCGCTGAAAAAAGCGA
GGCACCCCGTGCGCGTGCACGTGCACCCACGCACTCTCGAGTATTGCTCG
ACCCTGGGCGGAGAAAGGAGGAGGGTAAGGGGTGCTGCAGAATCACAGCC
GGTAATTTGGACGAGGCGTTGTTCAGGCAGACTTACTCTGCGCAAGCTTT
TCCGCTGCTCGACACACACGGCAACGCGTATGTACCGTGAGCGCTGGCTG
GCCTATGCGGCCATCACTGTTGCCCTTGGCTTGAACGAAACTTTGACCAT
CTATGATGGGCTTGGGATCATGCGACGGAGGTAGACGATGTCAAGGTTGT
ACCGTGCAGGGAATGGTTTGCAGCCACAGTCATGTCCGTGAGGGGTGACT
GACGCCTGTCGCGCGGTGCCTGGCCGTGGTTTTTGGCAACCCAAGACGTA
AGGATGAGACTCACGGCCTATCTATCTCTTCCTCAGACAAAACACGTTCT
CGCAATTTGGGCGAACTAGAGACCAGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7470:3367..7245+

>mRNA_Ecto-sp13_S_contig7470.18658.1 ID=mRNA_Ecto-sp13_S_contig7470.18658.1|Name=mRNA_Ecto-sp13_S_contig7470.18658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7470:3367..7245+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCTTTGGCTACGGGGAGTAGCGGTGCTGCTGGCTTTGCTCTCTTG
TAGCACCACCAACGCCGGGAGGTCTACTGCTGGGAGCAGTGACCCTATGG
ATCTCCTGAGCAGCGTGTCCGGCACATACACGCACTTCGTTGACGACGAT
TTGTCCGTTACGGTCAGCTACGACTTGCAGGACGACTCCAGCATACCGTT
CAGCTACCTCACCGGAGTGTCGGTGACGAAAGCCCAAGACCTGTATCGAA
AGACCGCACCTACGGAGCCCCTGGCGAGGCTCACGGTCACCGGCTCCGCC
CTCATCAAGCAGCGGTTACCATCCGGGGGCGCCATGATCGACACGGGCAA
CAAGACGGTGGGCATCAATATTAACCACGCCTCACGGCGAGCGCAGTTCC
GCTTCACTAGAGCGTTCATGGATGGGCGGTTCAAAGTGGGTCTCAACCCC
GTCGTGACGTACGGCCCGCTACGAAGACGGAGAGTGAACTTCAGCACCTT
GGTGCCGCCGTACCGTCCATTTCTCTCGGAGTCAGGATTGCCGAGCATGT
CGTTGCAGCAGCGGAGCGTCGTATGGGACTGGGCCCAGGGGATGCCATCG
ATATCCCCCCTTCACGGGCTGGGGGTTGCCCTACGCCTGCATACAGGCCG
GAGGGCATTGTTGAGCGCCACCCTGTTCGACGGCACGGACCGTTCCAGGT
TGTGGTCGGTGCGGGCGGATGTCCCCTTAGCGAAGCCGTGCAACACTTGC
TTCACGGCTGAGCGCGCATGGCAGGTGCCAACGACGAACAACGGGGCGCG
ATGA
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