mRNA_Ecto-sp13_S_contig74684.18655.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74684.18655.1
Unique NamemRNA_Ecto-sp13_S_contig74684.18655.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74684.18655.1 vs. uniprot
Match: D7FX60_ECTSI (WD40 repeat-containing protein SMU1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX60_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 4.200e-21
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:   13 QENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 147
            +ENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV
Sbjct:   19 KENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 63
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74684.18655.1 vs. uniprot
Match: A0A835ZIM7_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIM7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.180e-15
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 MHSCQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 147
            M   +E+NLT +L+ LQ+ES VCL+T+DNLDNL SDINHGRWE+V+PQV
Sbjct:   15 MQYLKEHNLTSSLKTLQSESKVCLDTVDNLDNLSSDINHGRWESVLPQV 63
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74684.18655.1 vs. uniprot
Match: A0A7S4DJ43_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJ43_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 6.900e-15
Identity = 30/46 (65.22%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   10 CQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 147
            C+EN+L +T+R LQAES V LNT+D+++N +SDINHGRW+AV+PQV
Sbjct:   39 CKENHLHQTMRTLQAESQVSLNTVDSMENFLSDINHGRWDAVLPQV 84
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74684.18655.1 vs. uniprot
Match: A0A7S3TVT7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TVT7_9SPIT)

HSP 1 Score: 65.5 bits (158), Expect = 1.730e-12
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   10 CQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 147
            C+EN L +TL+A+Q ES V LNT+D++D L+SDINHGRW+ V+  V
Sbjct:   44 CKENGLHRTLQAMQEESRVALNTVDSIDGLLSDINHGRWDVVLQTV 89
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74684.18655.1 vs. uniprot
Match: A0A8H7RYM9_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7RYM9_9FUNG)

HSP 1 Score: 68.9 bits (167), Expect = 2.150e-12
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   13 QENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 147
            +ENNL +TL ALQ ESSV  NT+DN DNL+ DINHGRW+AV+ QV
Sbjct:   20 RENNLERTLGALQKESSVTFNTVDNKDNLLQDINHGRWDAVLRQV 64
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74684.18655.1 vs. uniprot
Match: A0A8J4BEX1_9CHLO (Uncharacterized protein n=4 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BEX1_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 1.450e-11
Identity = 27/46 (58.70%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   10 CQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 147
            C+EN LT++  ALQ E  V LNT+D+++N +SDIN+GRW+AV+PQV
Sbjct:   18 CKENGLTESFNALQNECQVSLNTVDSVENFVSDINNGRWDAVLPQV 63
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74684.18655.1 vs. uniprot
Match: A0A150FYG8_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FYG8_GONPE)

HSP 1 Score: 65.9 bits (159), Expect = 1.640e-11
Identity = 26/46 (56.52%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   10 CQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 147
            C+EN LT++   +Q E  V LNT+D+++N +SDINHGRW+AV+PQV
Sbjct:   83 CKENGLTESFNVIQNECQVSLNTVDSVENFVSDINHGRWDAVLPQV 128
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74684.18655.1 vs. uniprot
Match: A8HPU4_CHLRE (WD40 repeat-containing protein SMU1 n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8HPU4_CHLRE)

HSP 1 Score: 65.9 bits (159), Expect = 2.620e-11
Identity = 27/46 (58.70%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   10 CQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 147
            C+EN LT +  A+Q E  V LNT+D++DNL++DIN+GRW+AV+PQV
Sbjct:   18 CKENGLTDSFNAIQNECQVSLNTVDSVDNLVADINNGRWDAVLPQV 63
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74684.18655.1 vs. uniprot
Match: D8U0F1_VOLCA (WD40 repeat-containing protein SMU1 n=3 Tax=Volvox TaxID=3066 RepID=D8U0F1_VOLCA)

HSP 1 Score: 64.7 bits (156), Expect = 6.690e-11
Identity = 26/46 (56.52%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   10 CQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 147
            C+EN LT++  A+Q E  V LNT+D+++N +SDIN+GRW+AV+PQV
Sbjct:   18 CKENGLTESFNAIQNECQVSLNTVDSVENFVSDINNGRWDAVLPQV 63
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74684.18655.1 vs. uniprot
Match: A0A835Y0Q1_9CHLO (WD40 repeat-containing protein SMU1 n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y0Q1_9CHLO)

HSP 1 Score: 64.7 bits (156), Expect = 6.690e-11
Identity = 26/46 (56.52%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   10 CQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 147
            C+EN LT++  A+Q E  V LNT+D+++N +SDIN+GRW+AV+PQV
Sbjct:   18 CKENGLTESFNAIQNECQVSLNTVDSVENFVSDINNGRWDAVLPQV 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74684.18655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX60_ECTSI4.200e-2197.78WD40 repeat-containing protein SMU1 n=2 Tax=Ectoca... [more]
A0A835ZIM7_9STRA4.180e-1567.35WD40 repeat-containing protein SMU1 n=1 Tax=Tribon... [more]
A0A7S4DJ43_HETAK6.900e-1565.22Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3TVT7_9SPIT1.730e-1258.70Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A8H7RYM9_9FUNG2.150e-1268.89Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A8J4BEX1_9CHLO1.450e-1158.70Uncharacterized protein n=4 Tax=Volvox africanus T... [more]
A0A150FYG8_GONPE1.640e-1156.52Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A8HPU4_CHLRE2.620e-1158.70WD40 repeat-containing protein SMU1 n=3 Tax=Chlamy... [more]
D8U0F1_VOLCA6.690e-1156.52WD40 repeat-containing protein SMU1 n=3 Tax=Volvox... [more]
A0A835Y0Q1_9CHLO6.690e-1156.52WD40 repeat-containing protein SMU1 n=1 Tax=Edapho... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74684contigEcto-sp13_S_contig74684:197..343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score94.0
Seed ortholog evalue2.1e-17
Seed eggNOG ortholog2880.D7FX60
Preferred nameSMU1
Model size147
KEGG koko:K13111
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007517,GO:0007528,GO:0007610,GO:0007638,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022008,GO:0023052,GO:0030154,GO:0030182,GO:0031323,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046983,GO:0048024,GO:0048468,GO:0048513,GO:0048644,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0061061,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0071840,GO:0072553,GO:0080008,GO:0080090,GO:0090304,GO:0098916,GO:0099172,GO:0099536,GO:0099537,GO:1901360,GO:1902494,GO:1903311,GO:1990234,GO:1990904
Exons1
EggNOG free text desc.regulation of alternative mRNA splicing, via spliceosome
EggNOG OGsKOG0275@1,KOG0275@2759
Cds size147
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464016.0028152-CDS-Ecto-sp13_S_contig74684:196..3431681464016.0028152-CDS-Ecto-sp13_S_contig74684:196..343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74684 197..343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74684.18655.1prot_Ecto-sp13_S_contig74684.18655.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74684 197..343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74684.18655.1

>prot_Ecto-sp13_S_contig74684.18655.1 ID=prot_Ecto-sp13_S_contig74684.18655.1|Name=mRNA_Ecto-sp13_S_contig74684.18655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
MHSCQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV
back to top

mRNA from alignment at Ecto-sp13_S_contig74684:197..343-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74684.18655.1 ID=mRNA_Ecto-sp13_S_contig74684.18655.1|Name=mRNA_Ecto-sp13_S_contig74684.18655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74684:197..343- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATTCATGCCAGGAGAACAACCTGACCAAGACGCTCAGGGCTCTCCA
GGCGGAGTCTAGCGTGTGCCTCAACACCATCGACAACCTGGACAACCTAA
TGAGCGACATCAACCACGGGCGTTGGGAGGCAGTCATGCCTCAGGTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74684:197..343-

>mRNA_Ecto-sp13_S_contig74684.18655.1 ID=mRNA_Ecto-sp13_S_contig74684.18655.1|Name=mRNA_Ecto-sp13_S_contig74684.18655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74684:197..343- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATTCATGCCAGGAGAACAACCTGACCAAGACGCTCAGGGCTCTCCA
GGCGGAGTCTAGCGTGTGCCTCAACACCATCGACAACCTGGACAACCTAA
TGAGCGACATCAACCACGGGCGTTGGGAGGCAGTCATGCCTCAGGTA
back to top