mRNA_Ecto-sp13_S_contig7468.18654.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7468.18654.1
Unique NamemRNA_Ecto-sp13_S_contig7468.18654.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7468.18654.1 vs. uniprot
Match: D7G8K5_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K5_ECTSI)

HSP 1 Score: 535 bits (1377), Expect = 1.310e-177
Identity = 302/339 (89.09%), Postives = 308/339 (90.86%), Query Frame = 1 
Query:   46 MSNNDTDITARDTGPVSMNGWARVQRKLLRLERDEEVEQVAGMINQLTAQECMERGVSLVPLAVTGLSTGLYGRACVSVGDPKGRPLPAHRLGAGDQVRLYSSKGGKGDVEGGISEISGVVGKVTEGTVEVISEDADDAGSLRAPLRLDVVASEATHKKLMLGLDALEKYPGGGPAERVINVLFGLEPPSAATVRSTPAAKGTTTPAVVVPTGPPAATFLSPALRSLNDSQREAVAFALATRDVALIHGPPGTGKTTTVVALIREAVARGWRCLVCAPSNVAVDGILEKLVAV----EXXXXXXXXXXXXXXXXYDGKKLGGRPRVVRMGHPARLLPRV 1050
            MSNNDTD TARDTGPVS+N WARVQRKLLRLERDEEVEQVAGMINQLTAQECMERGVSLVPLAVTGLSTGLYGRACVSVGDPKGRPLPAHRLGAGDQVRLYSSKGGKGDVEGGISEISGVVGKVTEGTVEVISEDADDAGSLRAPLRLDVVASEATHKKLMLGLDALEKYPGGGPAERVINVLFG EPPSAA                V PTGPPAAT  S ALRSLNDSQREAVAFALATRDVALIHGPPGTGKTTTVVAL++EAVARGWRCLVCAPSNVAVDG+LEKLVA      XXXXXXXXXXXXXXXXY GK +GGRPRVVRMGHPARLLP+V
Sbjct:    1 MSNNDTDSTARDTGPVSINEWARVQRKLLRLERDEEVEQVAGMINQLTAQECMERGVSLVPLAVTGLSTGLYGRACVSVGDPKGRPLPAHRLGAGDQVRLYSSKGGKGDVEGGISEISGVVGKVTEGTVEVISEDADDAGSLRAPLRLDVVASEATHKKLMLGLDALEKYPGGGPAERVINVLFGSEPPSAA---------------AVAPTGPPAATLSSLALRSLNDSQREAVAFALATRDVALIHGPPGTGKTTTVVALVQEAVARGWRCLVCAPSNVAVDGMLEKLVAAGEXXXXXXXXXXXXXXXXXXXYGGKNIGGRPRVVRMGHPARLLPQV 324
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7468.18654.1 vs. uniprot
Match: A0A6H5JGH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH1_9PHAE)

HSP 1 Score: 338 bits (866), Expect = 1.160e-107
Identity = 188/221 (85.07%), Postives = 194/221 (87.78%), Query Frame = 1 
Query:  388 SEISGVVGKVTEGTVEVISEDADDAGSLRAPLRLDVVASEATHKKLMLGLDALEKYPGGGPAERVINVLFGLEPPSAATVRSTPAAKGTTTPAVVVPTGPPAATFLSPALRSLNDSQREAVAFALATRDVALIHGPPGTGKTTTVVALIREAVARGWRCLVCAPSNVAVDGILEKLVAVEXXXXXXXXXXXXXXXXYDGKKLGGRPRVVRMGHPARLLPRV 1050
            S++SGVVGKVTEG +EVISEDADDAGSLRAPLRLDVV SEATHKKLMLGLDALEKYPGGGPAERVINVLFGLEPPSAATVRSTPAAK T T           AT  SPALRSLNDSQREAVAFALATRDVALIHGPPGTGKTTTVVALIREAVARGW+CLVCAPSNVAVDGILEKLVAVE      XXXXXXX   Y GKK+GGRPRVVRMGHPARLLP+V
Sbjct:   12 SQLSGVVGKVTEGAIEVISEDADDAGSLRAPLRLDVVVSEATHKKLMLGLDALEKYPGGGPAERVINVLFGLEPPSAATVRSTPAAKDTATXXXXXXXXXXXATISSPALRSLNDSQREAVAFALATRDVALIHGPPGTGKTTTVVALIREAVARGWKCLVCAPSNVAVDGILEKLVAVEDEGGGGXXXXXXXAEGYGGKKVGGRPRVVRMGHPARLLPQV 232
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7468.18654.1 vs. uniprot
Match: A0A835Z7I8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I8_9STRA)

HSP 1 Score: 270 bits (690), Expect = 1.380e-78
Identity = 176/321 (54.83%), Postives = 220/321 (68.54%), Query Frame = 1 
Query:   91 VSMNGWARVQRKLLRLERDEEVEQVAGMINQLTAQECMERGVSLVPLAVTGLSTGLYGRACVSVGDPKGRPLPAHRLGAGDQVRLYSSKGGKGDVEGGISEISGVVGKVTEGTVEVISED-ADDAGSLRAPLRLDVVASEATHKKLMLGLDALEKYPGGGPAERVINVLFGLEPPSAATVRSTPAAKGTTTPAVVVPTGPPAATFLSPALRSLNDSQREAVAFALATRDVALIHGPPGTGKTTTVVALIREAVARGWRCLVCAPSNVAVDGILEKLVAVEXXXXXXXXXXXXXXXXYDGKKLGGRPRVVRMGHPARLLPRV 1050
            + +  W R QR+LL  ER  E  ++A  + QL+A EC  +G+S++ L V  ++TGL+GR  V+VGD KGR L +HRL +GD+V L S+KGG     G +  ++GVVG+VT+  +EVIS+D   DA +L+APLRLDVVASEATHKKL+ GL  LEK+  GG A++VI+VLFG  PPS     S+ ++     P     T PP   F S    +LNDSQR A+AFAL+T DVALIHGPPGTGKTTTVV L+ +AVARGWR LV APSNVAVD +LEKLVA +    XXXXXXXXXXXX         P  VR+GHP RLLP V
Sbjct:    1 MDLEAWTRKQRELLNQERAAERAEIADSLAQLSAAECQAKGLSVLSLVVKEVTTGLFGRCVVTVGDTKGRALVSHRLSSGDEVTLRSTKGG-----GDVPSVAGVVGRVTDDRIEVISDDDRGDAEALKAPLRLDVVASEATHKKLVQGLANLEKH-SGGIADKVISVLFGQSPPSLLAPGSSSSSSAPQLP----DTAPPY--FNS----NLNDSQRSAIAFALSTDDVALIHGPPGTGKTTTVVELVLQAVARGWRVLVAAPSNVAVDNVLEKLVAAQDDSAXXXXXXXXXXXXXXXXXXRALP--VRLGHPVRLLPAV 303
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7468.18654.1 vs. uniprot
Match: A0A6H5JEY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY4_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 2.290e-70
Identity = 113/120 (94.17%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:   46 MSNNDTDITARDTGPVSMNGWARVQRKLLRLERDEEVEQVAGMINQLTAQECMERGVSLVPLAVTGLSTGLYGRACVSVGDPKGRPLPAHRLGAGDQVRLYSSKGGKGDVEGGISEISGV 405
            MSNNDTD TAR TGPVS+N WARVQRKLLRLERDEEVEQVAGM+NQLTAQECMERGVSLVPLAVTGLSTGLYGRACVSVGDPKGRPLPAHRLGAGDQVRLYSSKGGKGD+ GGISEISGV
Sbjct:    1 MSNNDTDSTARGTGPVSINEWARVQRKLLRLERDEEVEQVAGMLNQLTAQECMERGVSLVPLAVTGLSTGLYGRACVSVGDPKGRPLPAHRLGAGDQVRLYSSKGGKGDIGGGISEISGV 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7468.18654.1 vs. uniprot
Match: W7TRN4_9STRA (Dna-binding protein smubp-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRN4_9STRA)

HSP 1 Score: 207 bits (526), Expect = 6.400e-57
Identity = 157/337 (46.59%), Postives = 203/337 (60.24%), Query Frame = 1 
Query:   94 SMNGWARVQRKLLRLERDEEVEQVAGMINQLTAQECMERGVSLVPLAVTGLSTGLYGRACVSVGDP----KGRPLPAHRLGAGDQVRLYSSKG----GKGDVEGGISEISGVVGKVTEGTVEVIS--EDADD--------AGSLRAPLRLDVVASEATHKKLMLGLDALEKYPGGGPAERVINVLFGLEPPSAATVRSTPAAKGTTTPAVVVPTGPPAATFLSPALRSLNDSQREAVAFALATRDVALIHGPPGTGKTTTVVALIREAVARGWR-CLVCAPSNVAVDGILEKLVAVEXXXXXXXXXXXXXXXXYDGKKLGGRP-RVVRMGHPARLLP 1044
            S+  WA  QR  L+ ER+ E ++V   + QLT QEC E+GVSL+ L + G+STGLY R C+S+G      K   LPAH  GAGD+V L S KG    G G    G   I+GV+ + T G V++++  ED D          G     LRLD++++E+TH+K++  ++ +  YP  GPA R+I++ FG      A + + P    T  P  + P GP      S +   LND+QR AV   ++T DVALIHGPPGTGKTT VV LI +AV R  R  LVCAPSNVAVD I E+L    XXXXXXXXXXXXXXX  +   L  RP R+VR+GHPARL P
Sbjct:   15 SIEKWATQQRAALKEEREAERQEVTAALAQLTPQECQEKGVSLLHLNIAGISTGLYARKCISLGASTAVRKDGSLPAHGFGAGDEVVLRSMKGSSSKGSGAGATGSERITGVIARTTGGRVDMVASTEDLDSDLLEGWAAGGPGSGHLRLDMLSNESTHEKMLQAVEDVCNYPADGPAARIIDMCFG----GRACLGTLPPVPKTA-PTQLPPDGP------SYSGAVLNDAQRAAVTLGMSTEDVALIHGPPGTGKTTAVVELILQAVRRQQRRVLVCAPSNVAVDNIAERLALAPXXXXXXXXXXXXXXXRTE---LSKRPVRIVRLGHPARLAP 337
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7468.18654.1 vs. uniprot
Match: A0A4D9CVU4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVU4_9STRA)

HSP 1 Score: 205 bits (521), Expect = 2.810e-55
Identity = 142/343 (41.40%), Postives = 186/343 (54.23%), Query Frame = 1 
Query:   94 SMNGWARVQRKLLRLERDEEVEQVAGMINQLTAQECMERGVSLVPLAVTGLSTGLYGRACVSVGDP----KGRPLPAHRLGAGDQVRLYSSKG----GKGDVEGGISEISGVVGKVTEGTVEVIS--EDADD--------AGSLRAPLRLDVVASEATHKKLMLGLDALEKYPGGGPAERVINVLF------GLEPPSAATVRSTPAAKGTTTPAVVVPTGPPAATFLSPALRSLNDSQREAVAFALATRDVALIHGPPGTGKTTTVVALIREAVARGWR-CLVCAPSNVAVDGILEKLVAVEXXXXXXXXXXXXXXXXYDGKKLGGRP-RVVRMGHPARLLP 1044
            S+  WA  QR  L+ ER+ E ++V   + QLT QEC E+GVSL+ L + G+STGLY R C+S+G      K   LPAH  GAGD+V L S KG    G G    G   I+GV+ + T G V++++  ED D          G     LRLD++++E+TH+K++  ++ +  YP  GPA R+I++ F      G  PP   T            P  + P GP      S +   LND+QR AV   ++T DVALIHGPPGTGKTT VV LI +AV R  R  LVCAPSNVAVD I E+L                     +   L  RP R+VR+GHPARL P
Sbjct:  458 SIENWATQQRAALKEEREAERQEVTAALAQLTPQECQEKGVSLLHLNIAGISTGLYARKCISLGASTAVRKDGSLPAHGFGAGDEVVLRSMKGSSRKGSGAGATGNERITGVIARTTGGRVDMVASTEDLDSDLLEGWAAGGPGSGHLRLDMLSNESTHEKMLQAVEDVCNYPADGPAARIIDMCFSGRACLGTLPPVPKTA-----------PTQLPPDGP------SYSGAVLNDAQRAAVTLGMSTEDVALIHGPPGTGKTTAVVELILQAVRRQRRRVLVCAPSNVAVDNIAERLALAPPPPLPPSSSTDPTPSRTE---LSKRPVRIVRLGHPARLAP 780
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7468.18654.1 vs. uniprot
Match: UPI0018D94203 (DNA-binding protein SMUBP-2-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D94203)

HSP 1 Score: 171 bits (433), Expect = 1.230e-43
Identity = 120/328 (36.59%), Postives = 171/328 (52.13%), Query Frame = 1 
Query:   91 VSMNGWARVQRKLLRLERDEEVEQVAGMINQLTAQECMERGVSLVPLAVTGLSTGLYGRACVSVGDPKGR---PLPAHRLGAGDQVRLYSSKGGKGDVEGGISEISGVVGKVTEGTVEVISEDADDAGSL----RAPLRLDVVASEATHKKLMLGLDALEKYPGGGPAERVINVLFGLEPPSAATVRSTPAAKGTTTPAVVVPTG----PPAATFLSPALRSLNDSQREAVAFALATRDVALIHGPPGTGKTTTVVALIREAVARGWRCLVCAPSNVAVDGILEKLVAVEXXXXXXXXXXXXXXXXYDGKKLGGRPRVVRMGHPARLL 1041
            +++  + + Q +LL LER+ E+ + + ++  +  +E   RGV L+ L     STGLYGR  V+    KG     LP H + +GD V + SS GG         E SG+V +VT+ +V V  +  D  G +        RL  +A++ T+++L   L  L+ Y  G  A  +++VLFG    S+                 ++PT     P A+T L     +L+ SQREAV FAL  RD+A+IHGPPGTGKTTTVV +IR+AV    + L CAPSNVAVD ++E+LVA +                          RVVR+GHPARLL
Sbjct:    1 MALREFVKKQTELLSLEREAEIAETSALVENVPLKELQRRGVCLLKLHPASQSTGLYGRTLVTFAPNKGHGDGTLPTHNISSGDIVGVSSSHGGGAS---STDEPSGIVSRVTQSSVTVAFDHKDTDGPVTFEHEGLYRLTKLANDVTYRRLKRALSDLDSYTAGR-ASHLVDVLFGEADISSP----------------LLPTNLSQEPVASTELQFFNENLDQSQREAVTFALCQRDIAVIHGPPGTGKTTTVVEIIRQAVKHKLKVLACAPSNVAVDNLVERLVAAKV-------------------------RVVRLGHPARLL 283
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7468.18654.1 vs. uniprot
Match: S4RW89_PETMA (Immunoglobulin mu DNA binding protein 2 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RW89_PETMA)

HSP 1 Score: 164 bits (416), Expect = 4.830e-42
Identity = 124/325 (38.15%), Postives = 171/325 (52.62%), Query Frame = 1 
Query:   91 VSMNGWARVQRKLLRLERDEEVEQVAGMINQLTAQECMERGVSLVPLAVTGLSTGLYGRACVSVGDPKGRP---LPAHRLGAGDQVRLYSSKGGKGDVEGGISEISGVVGKVTEGTVEVISEDADDAGSLR--APLRLDVVASEATHKKLMLGLDALEKYPGGGPAERVINVLFGLEPPSAATVRSTPAAKGTTTPAVVVPTGPPAATFLSPALRSLNDSQREAVAFALATRDVALIHGPPGTGKTTTVVALIREAVARGWRCLVCAPSNVAVDGILEKLVAVEXXXXXXXXXXXXXXXXYDGKKLGGRPRVVRMGHPARLLPRV 1050
            +SM  +    ++LL+ ER+ E+EQ       +  +E   RG+ L+ L +    TGLYGR  +      G P   LP++  G GD V LY  +G +  VE  ++  SGVV +V+   V V  ++A DA  L+   P  L  +A++ T+K+L   L AL  + GG P+ ++I+VLFG   PSA                    TG     FL+ AL   + SQREAV FALA R+VA+IHGPPGTGKTTTVV +I++ V RG + L CAPSNVAVD ++E+L                              RV+R+GHPARLL  V
Sbjct:    5 MSMESFIVKWQELLKEEREAEIEQAKSWQQGVPLKELQRRGICLLRLHLCNRRTGLYGRQLLKFAARGGAPDSKLPSNDFGPGDIVGLY--EGARDAVEAQLA--SGVVTRVSASAVTVAFDEAHDALDLKHDGPYSLLKLANDVTYKRLKTALTALNNHHGG-PSGQMISVLFGTSEPSAPLAH----------------TGQ--VEFLNTAL---DHSQREAVIFALAQREVAIIHGPPGTGKTTTVVEIIQQTVRRGEKVLACAPSNVAVDNLVERLACAGV-------------------------RVLRLGHPARLLDSV 278
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7468.18654.1 vs. uniprot
Match: A0A6G0XBV0_9STRA (AN1-type domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XBV0_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.160e-41
Identity = 129/348 (37.07%), Postives = 180/348 (51.72%), Query Frame = 1 
Query:   31 RNADIMSNNDTDITARDTGPVSMNGWARVQRKLLRLERDEEVEQVAGMINQLTAQECMERGVSLVPLAVTGLSTGLYGRACVSVGDPKGRPLPAHRLGAGDQVRL------YSSKGGKGDVEGGISEISGVVGKVTEGTVEVISEDADDAGSL-RAPLRLDVVASEATHKKLMLGLDALEKYPGGGPAERVINVLFGLEPPSAATVRSTPAAKGTTTPAVVVPTGPPAATFLSPALRSLNDSQREAVAFALATRDVALIHGPPGTGKTTTVVALIREAVARG-WRCLVCAPSNVAVDGILEKLVAVEXXXXXXXXXXXXXXXXYDGKKLGGRPRVVRMGHPARLLPRV 1050
            R A+++S     I  R    +S+  W    R+LL++ERD E+ Q + M N  T    +   V L+ LA+   STGL+GR  V +   +GR    H    GD V++       + K  +G  +G       +V KV +  + V  ED DD        +RLD + ++AT++KL  G+DAL KY   GPA  V+NV+F   PPS+  + +            +VP  P            +N SQ +A+ FALA++DVALIHGPPGTGKTTT+V LI + V +   + LVCAPSN+AVD +LEKL A                     KKL    R+ R+GHPARLLP+V
Sbjct:   56 REAEVLSLTGKGIK-RTMRKISLERWIDKSRELLQMERDAEISQ-SKMEND-TLPALLNPNV-LLHLAMASSSTGLFGRTVVVLKQNQGREFGPHNFSIGDLVQMSIPTASLTPKNAEGFPKG-------IVTKVQDNAISVAFEDLDDVEDYDHQTIRLDRLVNDATYRKLHEGIDALAKY-NDGPAMNVLNVIFHGAPPSSNPLPT------------IVPVNP-----------GMNASQIDAIRFALASKDVALIHGPPGTGKTTTLVELIYQCVTQHKMKVLVCAPSNIAVDNVLEKLAASH-------------------KKL----RMTRVGHPARLLPQV 345
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7468.18654.1 vs. uniprot
Match: UPI0014559999 (DNA-binding protein SMUBP-2-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014559999)

HSP 1 Score: 165 bits (418), Expect = 1.230e-41
Identity = 115/328 (35.06%), Postives = 168/328 (51.22%), Query Frame = 1 
Query:   91 VSMNGWARVQRKLLRLERDEEVEQVAGMINQLTAQECMERGVSLVPLAVTGLSTGLYGRACVSVGDPKGRP---LPAHRLGAGDQVRLYSSKGGKGDVEGGISEISGVVGKVTEGTVEVI-----SEDADDAGSLRAPLRLDVVASEATHKKLMLGLDALEKYPGGGPAERVINVLFGLEPPSAATVRSTPAAKGTTTPAVVVPTGPPAATFLSPALRSLNDSQREAVAFALATRDVALIHGPPGTGKTTTVVALIREAVARGWRCLVCAPSNVAVDGILEKLVAVEXXXXXXXXXXXXXXXXYDGKKLGGRPRVVRMGHPARLLPRV 1050
            +++  + +   +LL LER+ E+ + + +I     +E   RGV L+ L +   STGLYGR  V     KGR    LPAH L  GD V +  S GG         + SG+V KVT+  + V      +ED           RL  +A++ T+++L   L +L+ Y  G PA  +I+VLFG       T    P++  T             ++       +L+ SQ++A+ FAL+ RDVA+IHGPPGTGKTTTVV +IR+AV +  + L CAPSN+AVD ++E+L A                          + R+VR+GHPARLLP +
Sbjct:    1 MAVRNFVQKHTELLSLEREAEIAETSALIENTPLKELQRRGVCLLKLHLVNQSTGLYGRTLVKFAPNKGRGDGNLPAHNLNPGDIVGVGQSHGGGAS---STDDPSGIVSKVTKAAITVAFDHKDTEDGPVTFDHEGLYRLTKLANDVTYRRLKKALQSLDSYTTG-PASHLIDVLFGEANVRPQTRPDQPSSDQT------------GSSDFQLFNENLDQSQQDAMTFALSQRDVAVIHGPPGTGKTTTVVEIIRQAVKQKLKVLACAPSNIAVDNLVERLAA-------------------------SKVRIVRIGHPARLLPSI 287
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7468.18654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8K5_ECTSI1.310e-17789.09R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JGH1_9PHAE1.160e-10785.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7I8_9STRA1.380e-7854.83P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5JEY4_9PHAE2.290e-7094.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TRN4_9STRA6.400e-5746.59Dna-binding protein smubp-2 n=1 Tax=Nannochloropsi... [more]
A0A4D9CVU4_9STRA2.810e-5541.40Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
UPI0018D942031.230e-4336.59DNA-binding protein SMUBP-2-like n=1 Tax=Patiria m... [more]
S4RW89_PETMA4.830e-4238.15Immunoglobulin mu DNA binding protein 2 n=1 Tax=Pe... [more]
A0A6G0XBV0_9STRA1.160e-4137.07AN1-type domain-containing protein n=2 Tax=Aphanom... [more]
UPI00145599991.230e-4135.06DNA-binding protein SMUBP-2-like n=1 Tax=Asterias ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7468contigEcto-sp13_S_contig7468:522..4209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score536.6
Seed ortholog evalue8.8e-150
Seed eggNOG ortholog2880.D7G8K5
Preferred nameIGHMBP2
Model size1052
KEGG koko:K19036,ko:K19783
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0000122,GO:0000166,GO:0000228,GO:0000278,GO:0000976,GO:0000977,GO:0000981,GO:0000982,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003700,GO:0003723,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006310,GO:0006355,GO:0006357,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0008026,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022402,GO:0022607,GO:0022616,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032574,GO:0032575,GO:0032991,GO:0033202,GO:0033203,GO:0033260,GO:0033267,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036477,GO:0042623,GO:0042995,GO:0043005,GO:0043021,GO:0043022,GO:0043025,GO:0043043,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043603,GO:0043604,GO:0043621,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044463,GO:0044464,GO:0044786,GO:0044877,GO:0045892,GO:0045934,GO:0046483,GO:0048471,GO:0048513,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050905,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051276,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097458,GO:0120025,GO:0120038,GO:0140097,GO:0140098,GO:0140110,GO:0150034,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902679,GO:1902969,GO:1902983,GO:1903047,GO:1903459,GO:1903506,GO:1903507,GO:1990837,GO:1990904,GO:1990955,GO:2000112,GO:2000113,GO:2001141
Exons5
EggNOG free text desc.ATP-dependent 5'-3' RNA helicase activity
EggNOG OGsCOG1112@1,KOG1803@2759
EC3.6.4.12,3.6.4.13
Cds size1050
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03012,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464015.9247043-CDS-Ecto-sp13_S_contig7468:521..7721681464015.9247043-CDS-Ecto-sp13_S_contig7468:521..772Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7468 522..772 -
1681464015.9389088-CDS-Ecto-sp13_S_contig7468:1178..14461681464015.9389088-CDS-Ecto-sp13_S_contig7468:1178..1446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7468 1179..1446 -
1681464015.950593-CDS-Ecto-sp13_S_contig7468:2122..22531681464015.950593-CDS-Ecto-sp13_S_contig7468:2122..2253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7468 2123..2253 -
1681464015.9618518-CDS-Ecto-sp13_S_contig7468:2839..30441681464015.9618518-CDS-Ecto-sp13_S_contig7468:2839..3044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7468 2840..3044 -
1681464015.972664-CDS-Ecto-sp13_S_contig7468:4014..42091681464015.972664-CDS-Ecto-sp13_S_contig7468:4014..4209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7468 4015..4209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7468.18654.1prot_Ecto-sp13_S_contig7468.18654.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7468 522..4209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7468.18654.1

>prot_Ecto-sp13_S_contig7468.18654.1 ID=prot_Ecto-sp13_S_contig7468.18654.1|Name=mRNA_Ecto-sp13_S_contig7468.18654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=350bp
RARRQKGTLLRNADIMSNNDTDITARDTGPVSMNGWARVQRKLLRLERDE
EVEQVAGMINQLTAQECMERGVSLVPLAVTGLSTGLYGRACVSVGDPKGR
PLPAHRLGAGDQVRLYSSKGGKGDVEGGISEISGVVGKVTEGTVEVISED
ADDAGSLRAPLRLDVVASEATHKKLMLGLDALEKYPGGGPAERVINVLFG
LEPPSAATVRSTPAAKGTTTPAVVVPTGPPAATFLSPALRSLNDSQREAV
AFALATRDVALIHGPPGTGKTTTVVALIREAVARGWRCLVCAPSNVAVDG
ILEKLVAVEEEGGGESAGGGGGGGGYDGKKLGGRPRVVRMGHPARLLPRV
back to top

mRNA from alignment at Ecto-sp13_S_contig7468:522..4209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7468.18654.1 ID=mRNA_Ecto-sp13_S_contig7468.18654.1|Name=mRNA_Ecto-sp13_S_contig7468.18654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3688bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7468:522..4209- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGCCAGGCGCCAGAAAGGCACCCTCCTCCGAAACGCAGACATCATGAG
TAACAATGACACAGACATCACGGCCCGGGACACAGGCCCCGTGTCCATGA
ACGGATGGGCCCGGGTGCAGCGGAAGCTGCTGAGGCTTGAACGAGACGAG
GAAGTCGAGCAAGTCGCCGGAATGATCAACCAACTTACGGCACAGGTGGG
ACCTCCCCTCGACGCCTGCTGCTGCCCCGCCCCCTTTCAGCAGAGCAAGG
GGCCTCGGCTTGCTGTGTGCAGCGGGATTTATCCGCAGAACGGCACTCAT
TCTGCAGCTGTTGTTACTGTCGTCAGCCGGGTTTGGGGCGTGGCTTGCGC
GAAACACACAGAACCCTTCTTGTGTGCAAAGAGTGAAGAACTCTGCGTTA
TTTGGTCTGTATTCACCCTTATACGCCTTCGCTTCCAATATAGCCAGTCC
CCTCTTTTGTGTCTACAGCAAGTATCTACTTGGGCTCGAGGAAAGTACGG
CAGCAGGGGCATGGCGGCAAACAGCAGGTTCCCCTTTGTCCGTGTGCATA
ACAGGGGAAAACCCACGGAAGGCACACTGCATAACCTGACACACATGTGG
TTGAGGAGATGATGTTGTACATGTGTGGGTAAAAGAGGCGTTGCCTATTT
TGTACGAAGTACCTCGCAGCTCGAGCCAGCGTGTTTTGAATACTTTTGTA
GGCTTGCGGTGTTTCTGTCGAATCGCATATCGGTACTGCTGTACTCCGCA
CAATATCCCTCGAGTTGCTCGTGTATCGAACGACCCTCGCGGTAAGCCGT
ACCACCGATGGCGCTGCTGTGTTGCTGGCATTTTCTCTCCTTCACTGCTG
TCCGACGACGCCTCCCACTACAAGAATGCATACGACACACGGTACTAAAG
TACTTTGACAGGGGGGGTTGAACCGATGATGCTACCCTGTTCCCCACACC
AGCTGTCTATGTAGATACCACGAGTGTTTCTGCCGCGATTGCATTGTACA
GCTACTCTAGGGCACCTTACCTACACGGGCGGAGCGCCTAGCCGCACATC
GTCGATGAGCAACTGCAGTGTTTTCTCCCTACCAAACACATGAATGTATC
GAGCCACCGTCGTCGTCGACCGGGCGTGATTGCCACAAACGCTTCAAAAC
ACGCACACCACGTAGGAATGCATGGAGCGCGGTGTCAGCCTCGTTCCTCT
CGCAGTGACGGGGCTGTCGACGGGTTTGTACGGAAGGGCGTGCGTCTCCG
TCGGGGATCCCAAGGGCCGGCCCCTGCCCGCGCACAGGCTGGGCGCCGGC
GACCAGGTCCGCCTGTACAGCTCCAAGGGGGGCAAGGGCGACGTCGAGGG
AGGGATATCTGAGATATCGGGTGAGCAAACGGCTCCATCCTGCTCGTCGT
CGCCATCATTTAGTTGTTCCACATTACCTATGGCCTGTTCATGTTCAGTC
GCCTCTCAGACCAGGAGCGTTTCTCGAGCCTGTTGTACCGCGCATGTGGG
AGCAACTCCGGTGCGAGAAAACAAAGTGTAGGTCGGTCCGTACAAAAACC
GTGTGTAGTTTCGTACGAAGCGCGCGACGCTCCTTGTTCCTGTCGTGTTG
CTGTGTGTGTTGCCGTGTGATTGCACGTGTCGTGCGTAGCATATACATGC
GTACGTATTATACCAGTTGGGCGCTCTTGACGTGCTTCGTTGTTTTGGAT
AAGTACACGGTGTACACAAGTGAACGGGGTGTTGGTGGTCGTACACAAAG
CAGTCTATATTGTAGCGCGAAACCGCAACATTCGTCCTTCTGGTGTTGAA
ACAATTCGTTTCAAGCATACACCACGCGCCTCAAAACAAAAGCGCTCGAT
GTGTGATACGCACTTTGTCGTACAAATTAAACGCTCCTTTTCGCTGCTAT
ATACTCTACGTTTGTGACACCTGTCGAAACGAAACGCCCACGCTCCCAAC
TGTCAGGCGTGGTGGGGAAGGTGACCGAGGGGACAGTAGAAGTTATCAGC
GAGGACGCAGACGATGCCGGCTCTCTACGAGCCCCGCTAAGGCTGGATGT
CGTAGCCAGCGAGGCCACGCACAAGAAGCTCATGCTAGTGAGTCAGTTCT
GGCTTCGCATGGGCCTGGTACACGAGGCGTTGAGGGGGCAGGGGGGGGGA
CGGGCGGCGTACCCCCTTGTTGCGGCTAGCGTTAGGGTATGGAGCTTGCT
ACCAACCGGTTACCGTACAGGTGGGGAGCGTACGTTTGTGTGTGTTTTCG
TCCCATAGATGCTAATAGGTGCCACGCTGGCCTTTCGGCAATTGGCTATC
GAACCAGCCGGGATTACACAGACAGGAGCAAGACCGTTTGTACTGCTGTG
GAGTCAATGCGAAGTTTCCAATGGGCGTGCCGGGTTCACCTCAGCATGAG
CGGTAATGTTTTGCAACGAGCTCACTCGGCCTCTCGTCTGTCGCTCACTA
ATTACCAGCATCGTTACCGGGCAAGATGGCGAAAGCGGGCGCGGTGGAAA
GTGCGGCACTATGCGCCAGCAGCGGCGGCGTCGGCGGCAGTCACGCCGGC
CCTCTTATCGTACGCCCTTACCCTCTTCCACCCCCCTTCCTCCGTTGGTA
ATCTGGGCCGGTGGAAACCCGGCGTATTGCTCCGTCCCGGCGCTGTAAGA
ACGCGAGGTCTACTGACTACAGCCTGCGTTTACATGAGCTCACCCCCCTC
CTTCCGTTGTCAACTTCGCGTGCCCGCACACGGTCTTTCCTGCCCCCCCT
CTCCCCACCACAGGGCCTAGACGCTCTGGAGAAATACCCCGGTGGAGGGC
CCGCCGAGCGCGTGATCAACGTGCTCTTCGGCTTGGAACCGCCGTCGGCT
GCCACTGTCAGATCGACCCCTGCTGCCAAGGGTACTACAACTCCTGCTGT
TGTTGTCCCGACGGGGCCCCCGGCGGCGACATTTTTGTCACCGGCCCTTA
GGTCGCTGAACGACTCTCAGCGAGAGGCGGTGGCGTTTGCGCTGGCGACC
CGCGACGTGGCGCTCATACACGGCCCCCCAGGTGGGTGCGATGGTGACCG
CCGCTGCGCGTTTTTCCCTCCCGGTCCTGAGATTTGTGTGGGGAAGCAAG
CGTTGGTGGGTGTGCGCTTTTCGCTATTCTACGGGGATAATTTAGTTGCG
GAGGGAGGAGGGGAGGCGCAATTTAGCGTGCCGGGTAGGTTCTGCGCTTG
GCCGTTTATTTCGCATCGGCGGCGCTGAGCGGCTGGCCATGCCCGGTCCT
GACGGACCGACCAAGGTACACAAGACGCCTTCACATTTGTGAACCCCCAC
CCACTTTATGTGTACACAGCATTTTCTGTGTTTTGCCTCCGAGTGTTTCA
CCGCTACAGTTGTAGCCTCTTCTTCGGACGGGATATCACCGCCACAGCCA
CAACATTTCCGTCGATGCCCCCCCCCCTCCCTCAAAGGCACCGGCAAGAC
GACGACTGTGGTGGCTCTCATTCGAGAAGCGGTGGCGCGCGGCTGGAGAT
GCCTTGTTTGTGCGCCGTCGAACGTCGCAGTAGACGGCATCTTGGAGAAG
CTGGTCGCGGTAGAGGAGGAAGGCGGAGGGGAGAGCGCAGGCGGCGGCGG
CGGTGGGGGGGGGTACGACGGAAAGAAATTAGGCGGCCGTCCGCGTGTTG
TGCGAATGGGACACCCGGCGAGGCTTCTACCGCGGGTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7468:522..4209-

>mRNA_Ecto-sp13_S_contig7468.18654.1 ID=mRNA_Ecto-sp13_S_contig7468.18654.1|Name=mRNA_Ecto-sp13_S_contig7468.18654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1050bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7468:522..4209- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGCCAGGCGCCAGAAAGGCACCCTCCTCCGAAACGCAGACATCATGAG
TAACAATGACACAGACATCACGGCCCGGGACACAGGCCCCGTGTCCATGA
ACGGATGGGCCCGGGTGCAGCGGAAGCTGCTGAGGCTTGAACGAGACGAG
GAAGTCGAGCAAGTCGCCGGAATGATCAACCAACTTACGGCACAGGAATG
CATGGAGCGCGGTGTCAGCCTCGTTCCTCTCGCAGTGACGGGGCTGTCGA
CGGGTTTGTACGGAAGGGCGTGCGTCTCCGTCGGGGATCCCAAGGGCCGG
CCCCTGCCCGCGCACAGGCTGGGCGCCGGCGACCAGGTCCGCCTGTACAG
CTCCAAGGGGGGCAAGGGCGACGTCGAGGGAGGGATATCTGAGATATCGG
GCGTGGTGGGGAAGGTGACCGAGGGGACAGTAGAAGTTATCAGCGAGGAC
GCAGACGATGCCGGCTCTCTACGAGCCCCGCTAAGGCTGGATGTCGTAGC
CAGCGAGGCCACGCACAAGAAGCTCATGCTAGGCCTAGACGCTCTGGAGA
AATACCCCGGTGGAGGGCCCGCCGAGCGCGTGATCAACGTGCTCTTCGGC
TTGGAACCGCCGTCGGCTGCCACTGTCAGATCGACCCCTGCTGCCAAGGG
TACTACAACTCCTGCTGTTGTTGTCCCGACGGGGCCCCCGGCGGCGACAT
TTTTGTCACCGGCCCTTAGGTCGCTGAACGACTCTCAGCGAGAGGCGGTG
GCGTTTGCGCTGGCGACCCGCGACGTGGCGCTCATACACGGCCCCCCAGG
CACCGGCAAGACGACGACTGTGGTGGCTCTCATTCGAGAAGCGGTGGCGC
GCGGCTGGAGATGCCTTGTTTGTGCGCCGTCGAACGTCGCAGTAGACGGC
ATCTTGGAGAAGCTGGTCGCGGTAGAGGAGGAAGGCGGAGGGGAGAGCGC
AGGCGGCGGCGGCGGTGGGGGGGGGTACGACGGAAAGAAATTAGGCGGCC
GTCCGCGTGTTGTGCGAATGGGACACCCGGCGAGGCTTCTACCGCGGGTA
back to top