mRNA_Ecto-sp13_S_contig7467.18653.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7467.18653.1 vs. uniprot
Match: A0A6H5KC88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC88_9PHAE) HSP 1 Score: 701 bits (1808), Expect = 2.930e-245 Identity = 537/631 (85.10%), Postives = 543/631 (86.05%), Query Frame = 1
Query: 115 MGATASRPLDIEAFRPPXXXXXXXXXXXXXXXXAASMEPGATSAPXXXXXXXXXSVTNGYHQEPPGPATSGGVFPVPLLRHLAERPGTINEHGVTTGKRSHHTAXXXXXXXXGEAEHPHSKRAAREFRVHHGGAGEAAESGVGLVDQGSDGSVPPAAAALEVDGARADAFIYPSTAVAEVASSATTVAHFPGDHGPRPFHAALEPFSAPMNRTGVGTFDPGDGARGVCETGVGICVRTSAAFPPPLPDQPSGIPSSVFAGGATAPPQLVRPDLVVVGHDGRACGRDASPPTGFAEVAVPLAPLPPPSVGEGVPVGGAPFGRGGGGGG---IHPSALLLPDETGIDVGTETALLSSRQPLRPEALSGGALTAALVGGTPADHGEDGPRTMPVPGDVASVPNSQQXXXXXXXXXXXXXXXXXXXXXXXXXXX-RTCAMEGCKRRPLFGAEGTRRPQFCSGHKPAGFVNVASRXXXXXXXXXXXXXXXPGSKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRASAXXXXXXXXXXXXXXXXXXXXXXXRRPVFGYSPGGGGGAVEQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGPPGVKKPTRCAGHRAPQHQRITTYHS 1995
MGA ASRPLDIEAFRPP AASME ATSAP XXXXXXX SVTNG+HQEPPGPATSGGVFPVPLLRHLAERPGT EHGVTTGKRSH T XXXXX GEAEH SKRAARE RVHH GAGEAA SGVGLVDQG+DGSV PAAAALEVDGAR DAFI AVAEVASSATTVAHFPGDHG RPFHAALEPFSAPMNRTGVGTFDPGDGARGVCE GVG V TSAAFPPPLPDQP+GIP SVFAGGA APPQLVRPDLVVVGHDGRACGRDASP GFAEVAVPLAPLP PSVGEGVPVGGA FG +HPSAL LPDE GIDVGTE ALLSS+QPLR EALSGG TAALVGG PADHGEDGPRTMP PGDVASVPNSQQ XXXXXXXXXXXXXXXXXXXXXXXX RTC MEGCKRRPLFGA+GTRRPQFCSGHKPAGFVNVASR XXXXXXXXXXXXX P SK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SRRASAXXXXXXXXXXXXXXXXXXXXXXX RPVFGY P GGGG VEQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GPPGVKKPTRCA HR PQHQRITTYHS
Sbjct: 1 MGAIASRPLDIEAFRPPPPEGTTATLALPAP--AASMEAEATSAPSXXXXXXXGSVTNGHHQEPPGPATSGGVFPVPLLRHLAERPGTTTEHGVTTGKRSHQTDTDXXXXXGGEAEHLPSKRAARELRVHHDGAGEAAGSGVGLVDQGADGSVSPAAAALEVDGARTDAFIDTVAAVAEVASSATTVAHFPGDHGRRPFHAALEPFSAPMNRTGVGTFDPGDGARGVCEIGVGNSVGTSAAFPPPLPDQPAGIPFSVFAGGAIAPPQLVRPDLVVVGHDGRACGRDASPSAGFAEVAVPLAPLPRPSVGEGVPVGGALFGXXXXXXXXXXVHPSALPLPDEAGIDVGTEAALLSSQQPLRSEALSGGVPTAALVGGAPADHGEDGPRTMPAPGDVASVPNSQQQTQXXXXXXXXXXXXXXXXXXXXXXXXXRTCGMEGCKRRPLFGAQGTRRPQFCSGHKPAGFVNVASRRXXXXXXXXXXXXXAPESKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARQGSRRASAXXXXXXXXXXXXXXXXXXXXXXXXRPVFGYGPSGGGGVVEQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPPGVKKPTRCARHRTPQHQRITTYHS 629
BLAST of mRNA_Ecto-sp13_S_contig7467.18653.1 vs. uniprot
Match: D7G3Q3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q3_ECTSI) HSP 1 Score: 682 bits (1759), Expect = 1.870e-237 Identity = 523/669 (78.18%), Postives = 533/669 (79.67%), Query Frame = 1
Query: 1 MKFQVAHTPGLFGSSRMLNPSPLRDTLHPETCLLYQHRMGATASRPLDIEAFRPPXXXXXXXXXXXXXXXXAASMEPGATSAPXXXXXXXXXSVTNGYHQEPPGPATSGGVFPVPLLRHLAERPGTINEHGVTTGKRSHHTAXXXXXXXXGEAEHPHSKRAAREFRVHHGGAGEAAESGVGLVDQGSDGSVPPAAAALEVDGARADAFIYPSTAVAEVASSATTVAHFPGDHGPRPFHAALEPFSAPMNRTGVGTFDPGDGARGVCETGVGICVRTSAAFPPPLPDQPSGIPSSVFAGGATAPPQLVRPDLVVVGHDGRACGRDASPPTGFAEVAVPLAPLPPPSVGEGVPVGGAPFGRGGGGGGIHPSALLLPDETGIDVGTETALLSSRQPLRPEALSGGALTAALVGGTPADHGEDGPRTMPVPGDVASVPNSQQXXXXXXXXXXXXXXXXXXXXXXXXXXX-----RTCAMEGCKRRPLFGAEGTRRPQFCSGHKPAGFVNVASRXXXXXXXXXXXXXXXPGSKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRASAXXXXXXXXXXXXXXXXXXXXXXXRRPVFGYSPGGGGGAVEQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGPPGVKKPTRCAGHRAPQHQRITTYH 1992
MKFQVAH PGLFG+ + + + TC RMGATASRP+DIEAFRP XXXXXXXXXXXXXXXX XXXXXXXXX PPGPATSGGVFPVP LRHLAERPGT EHGVTTGKRSH TA E E PHSKRAARE R HH GAGEAAESGVGLVDQG+DGS PPAA ALEVDGARADAFI P TAVAEVASSATTVAHFPGDHGPRPFHAAL PFSAPMNRTGVGTF PGDGARGVCE GVG VRTSAAFPPPLPDQP+G+ SSVFAGGATAPPQLVRPDL VVGHDGRACGRDASPP GFAEVAVPLAPLPPPSVGEGVPVGGAPFG GG+HPSAL LPDE GIDVGTE ALLSS QPLRPE LSGGA TAALVGG PADH EDG R MPVPGDVASVPNSQ XXXXXXXXXXXXXXXXXXXXXXXXXXX RTC MEGCKRRPLFGAEGTRRP FCSGHKPAGFVNVASR XXXXXXXXXXXXXXPGSKP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRASAXXXXXXXXXXXXXXXXXXXXXXXRRPVFGY PGGGGGAVEQK FGPPG KKP R A R PQHQ+ TYH
Sbjct: 1 MKFQVAHPPGLFGAVQYSRTTGIPPGA---TCTA---RMGATASRPVDIEAFRPXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXPPGPATSGGVFPVPFLRHLAERPGTTTEHGVTTGKRSHQTATEDGYDD--EVELPHSKRAARELRAHHAGAGEAAESGVGLVDQGADGSAPPAAGALEVDGARADAFIDPVTAVAEVASSATTVAHFPGDHGPRPFHAALGPFSAPMNRTGVGTFGPGDGARGVCEIGVGNSVRTSAAFPPPLPDQPAGMLSSVFAGGATAPPQLVRPDLAVVGHDGRACGRDASPPAGFAEVAVPLAPLPPPSVGEGVPVGGAPFG-----GGVHPSALPLPDEAGIDVGTEAALLSSPQPLRPEGLSGGAPTAALVGGAPADHDEDGLRMMPVPGDVASVPNSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTCGMEGCKRRPLFGAEGTRRPLFCSGHKPAGFVNVASRRXXXXXXXXXXXXXXPGSKPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRASAXXXXXXXXXXXXXXXXXXXXXXXRRPVFGYGPGGGGGAVEQKRAHYCNAHKLEGKGKGFPPRWPGGGGEEKAPFGPPGGKKPNRRARDRGPQHQKKNTYH 653 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7467.18653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7467.18653.1 >prot_Ecto-sp13_S_contig7467.18653.1 ID=prot_Ecto-sp13_S_contig7467.18653.1|Name=mRNA_Ecto-sp13_S_contig7467.18653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=666bp MKFQVAHTPGLFGSSRMLNPSPLRDTLHPETCLLYQHRMGATASRPLDIEback to top mRNA from alignment at Ecto-sp13_S_contig7467:195..2920+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7467.18653.1 ID=mRNA_Ecto-sp13_S_contig7467.18653.1|Name=mRNA_Ecto-sp13_S_contig7467.18653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7467:195..2920+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7467:195..2920+ >mRNA_Ecto-sp13_S_contig7467.18653.1 ID=mRNA_Ecto-sp13_S_contig7467.18653.1|Name=mRNA_Ecto-sp13_S_contig7467.18653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1998bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7467:195..2920+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |