mRNA_Ecto-sp13_S_contig74651.18652.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig74651.18652.1
Unique Name	mRNA_Ecto-sp13_S_contig74651.18652.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig74651.18652.1 vs. uniprot
Match: A0A6H5JQA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQA1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.450e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLRE 120
            RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLRE
Sbjct:   69 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLRE 108

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BLAST of mRNA_Ecto-sp13_S_contig74651.18652.1 vs. uniprot
Match: D7FWW4_ECTSI (Protein required for templated centriole assembly n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW4_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 6.590e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLRE 120
            RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLRE
Sbjct:  153 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLRE 192

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BLAST of mRNA_Ecto-sp13_S_contig74651.18652.1 vs. uniprot
Match: A0A3R7AUF9_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AUF9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.950e-11
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLREVCLRTETA 144
            RYLILTYA E+DRVHYPLPL FV++P    L+RTI RL++  L T TA
Sbjct:   75 RYLILTYAVEFDRVHYPLPLNFVETPSPAMLQRTIRRLKQTLLETRTA 122

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BLAST of mRNA_Ecto-sp13_S_contig74651.18652.1 vs. uniprot
Match: A0A397DWQ1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DWQ1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.520e-11
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLREVCLRTETA 144
            RYLILTYA E+DRVHYPLPL FV++P    L+RTI RL++  L T TA
Sbjct:   75 RYLILTYAVEFDRVHYPLPLNFVETPSPAMLQRTIRRLKQTLLETRTA 122

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BLAST of mRNA_Ecto-sp13_S_contig74651.18652.1 vs. uniprot
Match: A0A3R7B964_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7B964_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.110e-11
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLREVCLRTETA 144
            RYLILTYA E+DRVHYPLPL FV++P    L+RTI RL++  L T TA
Sbjct:   75 RYLILTYAVEFDRVHYPLPLNFVETPSPAMLQRTIRRLKQTLLETRTA 122

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BLAST of mRNA_Ecto-sp13_S_contig74651.18652.1 vs. uniprot
Match: A0A397C4S8_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C4S8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.000e-10
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLREVCLRTETA 144
            RYLILTYA E+DRVHYPLPL FV++P    L+RTI RL++  L T T+
Sbjct:   75 RYLILTYAVEFDRVHYPLPLNFVENPSPAMLQRTIRRLKQTLLETRTS 122

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BLAST of mRNA_Ecto-sp13_S_contig74651.18652.1 vs. uniprot
Match: A0A397C2A6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C2A6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.070e-10
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLREVCLRTETA 144
            RYLILTYA E+DRVHYPLPL FV++P    L+RTI RL++  L T T+
Sbjct:   75 RYLILTYAVEFDRVHYPLPLNFVENPSPAMLQRTIRRLKQTLLETRTS 122

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BLAST of mRNA_Ecto-sp13_S_contig74651.18652.1 vs. uniprot
Match: W4HAU9_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAU9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.320e-10
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLREVCLRTETA 144
            RYLILTYA E+DRVHYPLPL FV++P    L+RTI RL++  L T T+
Sbjct:  143 RYLILTYAVEFDRVHYPLPLNFVETPSPAMLQRTIRRLKQTLLETRTS 190

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BLAST of mRNA_Ecto-sp13_S_contig74651.18652.1 vs. uniprot
Match: W4H8J9_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8J9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.320e-10
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLREVCLRTETA 144
            RYLILTYA E+DRVHYPLPL FV++P    L+RTI RL++  L T T+
Sbjct:  143 RYLILTYAVEFDRVHYPLPLNFVETPSPAMLQRTIRRLKQTLLETRTS 190

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BLAST of mRNA_Ecto-sp13_S_contig74651.18652.1 vs. uniprot
Match: A0A6G0XXA4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXA4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.100e-9
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLREVCLRTETARGEVLQQ 165
            RYLILTYA E+DRVHYPLPL+F+++P    L++TI RL++  L T++     L +
Sbjct:  115 RYLILTYAVEFDRVHYPLPLSFIENPSPDMLKKTIKRLKQALLDTKSENSPQLDK 169

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig74651.18652.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig74651.18652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JQA1_9PHAE	5.450e-17	100.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FWW4_ECTSI	6.590e-17	100.00	Protein required for templated centriole assembly ...	[more]
A0A3R7AUF9_9STRA	2.950e-11	64.58	Uncharacterized protein n=4 Tax=Aphanomyces astaci...	[more]
A0A397DWQ1_9STRA	4.520e-11	64.58	Uncharacterized protein n=2 Tax=Aphanomyces astaci...	[more]
A0A3R7B964_9STRA	7.110e-11	64.58	Uncharacterized protein n=3 Tax=Aphanomyces astaci...	[more]
A0A397C4S8_9STRA	1.000e-10	62.50	Uncharacterized protein n=3 Tax=Aphanomyces astaci...	[more]
A0A397C2A6_9STRA	1.070e-10	62.50	Uncharacterized protein n=1 Tax=Aphanomyces astaci...	[more]
W4HAU9_9STRA	2.320e-10	62.50	Uncharacterized protein n=4 Tax=Aphanomyces astaci...	[more]
W4H8J9_9STRA	2.320e-10	62.50	Uncharacterized protein n=5 Tax=Aphanomyces astaci...	[more]
A0A6G0XXA4_9STRA	1.100e-9	50.91	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig74651	contig	Ecto-sp13_S_contig74651:479..646 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	0
Seed ortholog score	83.2
Seed ortholog evalue	4.3e-14
Seed eggNOG ortholog	2880.D7FWW4
Preferred name	CCDC61
Model size	168
KEGG ko	ko:K16755
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0015630,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
Exons	1
EggNOG OGs	28IZ0@1,2QRAS@2759
Cds size	168
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03036

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464015.7911024-CDS-Ecto-sp13_S_contig74651:478..646	1681464015.7911024-CDS-Ecto-sp13_S_contig74651:478..646	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig74651 479..646 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig74651.18652.1	prot_Ecto-sp13_S_contig74651.18652.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig74651 479..646 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig74651:479..646-
coding sequence from alignment at Ecto-sp13_S_contig74651:479..646-

protein sequence of mRNA_Ecto-sp13_S_contig74651.18652.1

>prot_Ecto-sp13_S_contig74651.18652.1 ID=prot_Ecto-sp13_S_contig74651.18652.1|Name=mRNA_Ecto-sp13_S_contig74651.18652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLREVCLRTETARG
EVLQQ*

mRNA from alignment at Ecto-sp13_S_contig74651:479..646-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig74651.18652.1 ID=mRNA_Ecto-sp13_S_contig74651.18652.1|Name=mRNA_Ecto-sp13_S_contig74651.18652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74651:479..646- (Ectocarpus species13 EcNAP12_S_4_19m)
AGATACCTGATCCTGACGTACGCTGCGGAGTACGACCGCGTCCACTACCC
CCTACCCCTGGCCTTCGTAGACTCGCCCCAGCGACAGCAGCTGGAGAGGA
CCATCGATAGGCTGAGGGAGGTGTGTTTGCGTACGGAAACGGCGAGAGGG
GAAGTCCTGCAACAATAA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74651:479..646-

>mRNA_Ecto-sp13_S_contig74651.18652.1 ID=mRNA_Ecto-sp13_S_contig74651.18652.1|Name=mRNA_Ecto-sp13_S_contig74651.18652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74651:479..646- (Ectocarpus species13 EcNAP12_S_4_19m)
AGATACCTGATCCTGACGTACGCTGCGGAGTACGACCGCGTCCACTACCC
CCTACCCCTGGCCTTCGTAGACTCGCCCCAGCGACAGCAGCTGGAGAGGA
CCATCGATAGGCTGAGGGAGGTGTGTTTGCGTACGGAAACGGCGAGAGGG
GAAGTCCTGCAACAATAA