mRNA_Ecto-sp13_S_contig7460.18647.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7460.18647.1
Unique NamemRNA_Ecto-sp13_S_contig7460.18647.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7460.18647.1 vs. uniprot
Match: D7FJJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ5_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.220e-37
Identity = 76/95 (80.00%), Postives = 80/95 (84.21%), Query Frame = 3 
Query:  126 SALTLPTK*LCRNAVIL---VASTQAMRGNFIQAKQLFWRAVHACPGNKAVWMDALRGSQRDRVGAAGLRPAFRTKELNEAIDALLEKSLHLRAE 401
            SA+T PT    R   +L     S +AMRGNF+QAKQLFWRAVHACPGNKAVWMDALRGSQRDRVG AGLRPAFRTKELNEAIDALLEKSLHLRAE
Sbjct:  919 SAITHPTG---RGMPVLWRMYMSMEAMRGNFLQAKQLFWRAVHACPGNKAVWMDALRGSQRDRVGEAGLRPAFRTKELNEAIDALLEKSLHLRAE 1010
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7460.18647.1 vs. uniprot
Match: A0A6H5JC63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC63_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.080e-36
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 3 
Query:  192 AMRGNFIQAKQLFWRAVHACPGNKAVWMDALRGSQRDRVGAAGLRPAFRTKELNEAIDALLEKSLHLRAE 401
            AMRGNF+QAKQLFWRAVHACPGNKAVWMDALRGS+RDRVGAAGLRPAFRTKELNEAIDALLEKSLHLRAE
Sbjct: 1485 AMRGNFLQAKQLFWRAVHACPGNKAVWMDALRGSRRDRVGAAGLRPAFRTKELNEAIDALLEKSLHLRAE 1554
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7460.18647.1 vs. uniprot
Match: A0A835ZIY3_9STRA (NRDE-2, necessary for RNA interference-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIY3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.000e-6
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 3 
Query:  213 QAKQLFWRAVHACPGNKAVWMDALRGSQRDRVGAAGLRPAFRTKELNEAIDALLEKSLHLR 395
            +AK+L  RA+HACPG +A+W+DA R           LR  FR  EL++ +D + EK L LR
Sbjct: 1678 RAKRLHIRAIHACPGARALWLDAAR--------RGALRGVFRAAELSDLVDVMAEKELRLR 1730
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7460.18647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJJ5_ECTSI2.220e-3780.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC63_9PHAE1.080e-3697.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZIY3_9STRA4.000e-644.26NRDE-2, necessary for RNA interference-domain-cont... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7460contigEcto-sp13_S_contig7460:971..1371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size403
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464015.4948084-CDS-Ecto-sp13_S_contig7460:970..12791681464015.4948084-CDS-Ecto-sp13_S_contig7460:970..1279Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7460 971..1279 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464015.5069077-UTR-Ecto-sp13_S_contig7460:1279..13711681464015.5069077-UTR-Ecto-sp13_S_contig7460:1279..1371Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7460 1280..1371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7460.18647.1prot_Ecto-sp13_S_contig7460.18647.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7460 971..1279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7460.18647.1

>prot_Ecto-sp13_S_contig7460.18647.1 ID=prot_Ecto-sp13_S_contig7460.18647.1|Name=mRNA_Ecto-sp13_S_contig7460.18647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
LDGVRDNPPHRSRDPCPLEDVYVHGGECILLSFLDRLVPHSCLLLPCPRS
NFVETLSFLLLLLRPCAGTLYRLSNCFGARFTRAPATRLFGWTLFAGANA
IG*
back to top

mRNA from alignment at Ecto-sp13_S_contig7460:971..1371+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7460.18647.1 ID=mRNA_Ecto-sp13_S_contig7460.18647.1|Name=mRNA_Ecto-sp13_S_contig7460.18647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7460:971..1371+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGATGGAGTCCGCGATAACCCACCCCACCGGTCGCGGGATCCCTGTCC
TCTGGAGGATGTATATGTCCATGGAGGCGAGTGCATCTTGTTGAGCTTCC
TCGATAGGTTGGTTCCCCACTCATGTCTGCTCTTACCTTGCCCACGAAGT
AACTTTGTCGAAACGCTGTCATTCTTGTTGCTTCTACTCAGGCCATGCGC
GGGAACTTTATACAGGCTAAGCAATTGTTTTGGCGCGCGGTTCACGCGTG
CCCCGGCAACAAGGCTGTTTGGATGGACGCTCTTCGCGGGAGCCAACGCG
ATCGGGTAGGCGCGGCAGGGCTGAGGCCAGCTTTCCGCACGAAGGAGCTC
AACGAGGCGATCGACGCCTTGCTGGAGAAATCTCTTCACCTCCGAGCTGA
G
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7460:971..1371+

>mRNA_Ecto-sp13_S_contig7460.18647.1 ID=mRNA_Ecto-sp13_S_contig7460.18647.1|Name=mRNA_Ecto-sp13_S_contig7460.18647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7460:971..1371+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGATGGAGTCCGCGATAACCCACCCCACCGGTCGCGGGATCCCTGTCC
TCTGGAGGATGTATATGTCCATGGAGGCGAGTGCATCTTGTTGAGCTTCC
TCGATAGGTTGGTTCCCCACTCATGTCTGCTCTTACCTTGCCCACGAAGT
AACTTTGTCGAAACGCTGTCATTCTTGTTGCTTCTACTCAGGCCATGCGC
GGGAACTTTATACAGGCTAAGCAATTGTTTTGGCGCGCGGTTCACGCGTG
CCCCGGCAACAAGGCTGTTTGGATGGACGCTCTTCGCGGGAGCCAACGCG
ATCGGGTAG
back to top