mRNA_Ecto-sp13_S_contig746.18645.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig746.18645.1
Unique NamemRNA_Ecto-sp13_S_contig746.18645.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig746.18645.1 vs. uniprot
Match: D7FPE5_ECTSI (SET and MYND domain containing 1b n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE5_ECTSI)

HSP 1 Score: 880 bits (2275), Expect = 5.200e-316
Identity = 456/536 (85.07%), Postives = 468/536 (87.31%), Query Frame = 3
Query:  291 MVDLVDESASESSPPTKSFGDGDPTQYARRTANLDARVEVRFDPKRGRGLFALRDIPSGTEVMRVPAAAAVLLDRSRKGSCSGCLLPTDTVGSLEACHGFPLSFCAGCKKSGTVGVLGGVHKSATRELTKELNTMCATSVGVDKDSLRLAADVFVRRKAGLFDDSEWGLLNSLESHDNEAHTMSLAPAELHKCTHLFKTLVDTNISDEDVQAMYRRQAVVITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVAESSSPEGRPVVKQVLRSIRNICAGDELCYSYLSSGSAVGTVSERRELLMGWGFRCACARCQSEAEEEKRLRRQRTPTDERALKMLERLAQISALGQRPHAIWSSGQQTTVDEATLVTKHFYIRKILPHVFTRPTYCLVDSRKNALALREEAYMPDLQIIAEFYSREKGKRLSPMLQYRVAVLMMEVTALVGATNLFFRFMVCGFAADELSELRNAMAITCRQQQYMFATKVEVCDLGEAQVTKKLEGIRAVGKFARTDARQLHELYYGGQSK 1898
            MVDLVDESASESSP T+S  DGDPT+YARRTANLDARVEVRFDPKRGRGLFALRDIP+GTEVMRVPAAAAVLLDRSRKGSCSGCLLPTDTVGSLEACHGFPLSFCA CKK+ TVG + GVH SAT ELTKELNT+CATS G+DKDSLRLAADVFVRRKAGLFDDSEWGLLNSLESHDNEAHTMSLAPAELHKCT LFKTLVDTNISDEDVQAMYRR    ITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCV ESSSPEGRPVVKQVLRSIRNI AGDELCYSYLSSGSAVGTVSERR+LLMGWGFRCACARC SEAEEEKRLRRQRTP DERALKMLERLAQISALGQR                                            +NA ALREEAYMPDLQ+IAEFYSREKGK LSPMLQYRVAVLMMEVTAL+GATNLFFRFMVCGFAADELSELRNAMAITCRQQQYMFATKVEVCDLGE Q TKKLEGIRAVGKFAR DAR+LHELYYGGQSK
Sbjct:    1 MVDLVDESASESSPETRSSSDGDPTRYARRTANLDARVEVRFDPKRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSRKGSCSGCLLPTDTVGSLEACHGFPLSFCAACKKATTVGGVSGVHNSATCELTKELNTICATSGGIDKDSLRLAADVFVRRKAGLFDDSEWGLLNSLESHDNEAHTMSLAPAELHKCTRLFKTLVDTNISDEDVQAMYRR----ITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVTESSSPEGRPVVKQVLRSIRNIRAGDELCYSYLSSGSAVGTVSERRDLLMGWGFRCACARCLSEAEEEKRLRRQRTPIDERALKMLERLAQISALGQR--------------------------------------------ENAPALREEAYMPDLQLIAEFYSREKGKLLSPMLQYRVAVLMMEVTALIGATNLFFRFMVCGFAADELSELRNAMAITCRQQQYMFATKVEVCDLGETQATKKLEGIRAVGKFARNDARRLHELYYGGQSK 488          
BLAST of mRNA_Ecto-sp13_S_contig746.18645.1 vs. uniprot
Match: A0A397UIR2_9GLOM (Uncharacterized protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UIR2_9GLOM)

HSP 1 Score: 80.5 bits (197), Expect = 5.030e-12
Identity = 79/319 (24.76%), Postives = 139/319 (43.57%), Query Frame = 3
Query:  402 VEVRFDPKRGRGLFALRDIPSGTEVMRVPAAAAVLLDRSRKGSCSGCL-LPTDTVGSLEACHGFPLSFC-AGCKKSGTVGVLGGVHKSATRELTKELNTMCATSVGVDKDSLR---LAADVFVRRKAGLFDDSEWGLLNSLESHDN-------EAHTMSLAPAELHKCTHLFKTLVDTNISDEDVQAMYRRQAVV----ITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVAESSSPEGRPVVKQVLRSIRNICAGDELCYSYLSSGSAVGTVSERRELLMGWGFRCACARCQSE------AEEEKRL 1292
            + +  +P   R L  L+ IP G+ ++  P+ A   +       C+ CL +P + + +   CH     +C   C+K     +    H      + K+       S  +D++ LR   L  + ++++K+  + ++E   L  L    N        +H     P +L K    FK++     SD D+Q + + + +      + N   +  N   P FG  +G +  G+L+NHSC PN          +  G     Q+LRSI NI AG+E+  SY+    A+   S ++ L   + F+C C RC S+       EEE+++
Sbjct:   13 LSLEENPTTYRALKTLKHIPKGSTIITSPSLACFPIPSMINVRCNNCLEIPIEPLKTCSRCH--KTFYCNVKCQK-----LAWSAHHKILCPIYKKEGNKTLDSDYMDEEMLRRIALRIEKYLKKKS--YHETETVSLTGLNEKVNCETFLTLMSHREKRTPEQLEK----FKSIAKNVFSDLDLQNITQDELITYLCRFSCNNFNLDDNQLFP-FG--EGTYSIGSLINHSCRPNAIMMYSIGQQTNSG----SQILRSIENIKAGEEITISYIDV--AMSRTSRQKLLNEKYFFKCQCPRCSSDNVSIDITEEERKV 309          
BLAST of mRNA_Ecto-sp13_S_contig746.18645.1 vs. uniprot
Match: A0A7S1AGI2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AGI2_NOCSC)

HSP 1 Score: 76.6 bits (187), Expect = 4.800e-11
Identity = 94/341 (27.57%), Postives = 139/341 (40.76%), Query Frame = 3
Query:  429 GRGLFALRDIPSGTEVMRVPAAAAVLLDRSRKGSCSGCLLPTDTVGSLEACHGFPLSFCAGCKKSGTV-----GVLGGVHKSATRELTKE-LNTMCATSVGVDKDSLRLAADVFV------RRKAGLF-----DDSEWGLLNSLES---HDNEAHTMSLAPAELHKCTHLFKTLVDTNISD-------------------EDVQAMYRRQAVVITRNAHTVSPN-------TSKPG----FGSVQGLFPCGALVNHSCLPNTFFHCVAESSSPEGRPVVKQVLRSIRNICAGDELCYSYLSSGSAVGTVSERRE-LLMGWGFRCACARCQSEAEEEKRLRR 1298
            GR   A R++ +G  V+R    AA L DR     CS C  PTD V     CH     FC+ C KS        G    V  + +   T+  L     +S G     LRLA  +        R K  L       D EW  + S +    HD+      L+P        L   L    + +                   +DV  +  R    I+ NA T++P        TS       FG   GL+P GA++NHSC P+  +   + +       ++ + LR +R    G+EL  +YL      GTV++RR  LL  +GF C C+ C++E+  +K+++R
Sbjct:   16 GRCYLATRNVSAGETVLRCAPIAAALHDRDVPKRCSRCFAPTDGVPCT--CHAI---FCSTCAKSSDAKREHRGECMAVKLALSDRKTRNALGLKSKSSTGTATTFLRLAVRLLSVRARHSRSKPVLLLGDPDGDGEW--IPSADEDVIHDSWEDVEELSPETDEALEALLARLQKGRVEELEGGVNAVRLLSGSRRASWDDVFRLLCR----ISMNAMTLAPEAQVRRALTSSKSRWKDFGI--GLYPSGAMLNHSCFPSCLWFVRSGT-------LIVETLRVVRR---GEELTIAYLPVS---GTVTQRRRRLLHAFGFHCVCSHCEAESNLQKKVQR 330          
BLAST of mRNA_Ecto-sp13_S_contig746.18645.1 vs. uniprot
Match: A0A834Y2W5_9HYME (SET domain-containing protein n=2 Tax=Aphidius gifuensis TaxID=684658 RepID=A0A834Y2W5_9HYME)

HSP 1 Score: 72.0 bits (175), Expect = 2.030e-9
Identity = 78/287 (27.18%), Postives = 113/287 (39.37%), Query Frame = 3
Query:  408 VRFDPKRGRGLFALRDIPSGTEVMR-VPAAAAVLLDRSRKGSCSGCLLPTDTVGSLEACHGFPLSFCAG-CKKSGTVGVLGGVHKSATRELTKELNTMCATSVGVDKDSLRLAADVFVRRKAGLFDDSEWGLLNSLESHDNEAHTMSLAPAELHKCTHLFKTLVDTNISDEDVQAMYRRQAVVITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVAESSSPEGRPVVKQVLRSIRNICAGDELCYSYLSSGSAVGTVSERRELLMGWGFRCACARC 1262
            V++    GRGL A+RDI  G  +    P              C  C     T+ S +   G P+  C+  C+ S         H ++  +    L   C +       S+ L   V   R   L DD E  LLN +E HD   H   +          L K  +   I+++D + M +   +  T    TV     K    S++GLFP GAL NHSC PNT  +    +           + ++ R+I AG+EL  +Y  +     T   RR L+    F C C RC
Sbjct:   29 VKYSSLGGRGLHAIRDIKQGELIFTDKPLIIGPRCYNKYLPMCINCYKSDCTLFSCDNGCGLPI--CSNDCENSIK-------HINSECKYLNNLQVTCGSMW-----SMELLQTVVPIRALSLNDD-EKKLLNGMECHDGPGHGREIE---------LLKKNISNIINEDDEKYMKKVCRIFDTNAFETVLIIDGKTSI-SLRGLFPLGALQNHSCTPNTRHYFTNNNV---------MITKASRDIKAGEELTMTY--TDLLWDTSLRRRYLIASKHFECNCKRC 279          
BLAST of mRNA_Ecto-sp13_S_contig746.18645.1 vs. uniprot
Match: A0A1Y2D3F3_9FUNG (SET domain-containing protein (Fragment) n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2D3F3_9FUNG)

HSP 1 Score: 69.7 bits (169), Expect = 1.240e-8
Identity = 83/304 (27.30%), Postives = 125/304 (41.12%), Query Frame = 3
Query:  426 RGRGLFALRDIPSGTEVMRVPAAAAVLLDRSRKGSCSGCLLPTDTVGSLEACHGFPLSF-----------CAGCKK-----SGTVGVLGGVHKSATRELTKELNTMCATSVGVDKDSLRLAADVFVRRK------AGLFDDSEWGLLNSLESHDNEAHTMSLAPAELHKCTHLFKTLV--DTNISDEDVQAMYRRQAVVITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVAESSSPEGRPVVKQVLRSIRNICAGDELCYSYLSSGSAVGTVSERRELLMGWGFRCACARCQ 1265
            +GR + A  D+ +GT V+   A+A  LL  S    C  CL P  +  +  A     L             CA C K     S T         +   E+ ++L  + A +  VD   +RL   V V+R       A + +++   L+  L SH        LA  E  +C   F   +  +  I   D+ ++  R    I  N+H +   T         G+FP  A++NHSC PN  F      SS  G    K ++R++R +  G+ELC SY+           R +LL    F CAC+RC+
Sbjct:    7 KGRHVKAAADLVAGTNVVVETASALALLKHSTDELCLCCLRPLPSESTTRAGERINLLGGSSSSKTSAIKCARCIKQAFYCSDTCKNDDAKRHALECEVLRDLPGITAAA-NVDYTLMRLVLAVLVQRSMELSGAAAVRENTSADLVFDLLSHRKTCDPKWLACVE--ECAEDFAQHLPPELAIPVSDIVSLACR----INSNSHGIIDPTGNTNGEVGVGMFPLVAMLNHSCAPNCSF-----VSSTHG----KMIVRTLRPVKEGEELCVSYVDL--CTPRDERRGKLLETKHFWCACSRCE 292          
BLAST of mRNA_Ecto-sp13_S_contig746.18645.1 vs. uniprot
Match: A0A7S1HKR9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HKR9_HEMAN)

HSP 1 Score: 66.2 bits (160), Expect = 7.940e-8
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 3
Query: 1014 GLFPCGALVNHSCLPNTFFHCVAESSSPEGRPVVKQVLRSIRNICAGDELCYSYLSSGSAVGTVSERRELLMGWGFRCACARC 1262
            G++P GA++NHSC PN   +    +         +QV+R+I  +  GDELC+SY+ + SA     ER  L + +GF+CAC RC
Sbjct:  235 GVYPLGAILNHSCAPNCVLYYEPRTH--------RQVIRAISAVREGDELCHSYIDAASATPQRLER--LSICYGFQCACQRC 307          
BLAST of mRNA_Ecto-sp13_S_contig746.18645.1 vs. uniprot
Match: UPI0005AC6280 (protein msta, isoform B-like n=1 Tax=Fopius arisanus TaxID=64838 RepID=UPI0005AC6280)

HSP 1 Score: 66.6 bits (161), Expect = 1.120e-7
Identity = 77/292 (26.37%), Postives = 112/292 (38.36%), Query Frame = 3
Query:  429 GRGLFALRDIPSGTEV-MRVPAAAAVLLDRSRKGSCSGCLLPTDTVGSLEACHGFPLSFCAGCKKSGTVGVLGGVHKSATRELTKELNTMCATSVGVDKDSLRLAADVFVRRKAGLFDDSEWGLLNSLESHDNEAHTMSLAPAELHKCTHLFKTLVDTNISDEDVQAMYRRQAVVITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVAESSSPEGRPVVKQVLRS--IRNICA------GDELCYSYLSSGSAVGTVSERRELLMGWGFRCACARCQSEAE 1277
            GRGLFA RDI  G E+ +  P        +     C  C     T+   +   G P+   A C+ S         H     +  K+    C +    D     L   V   R   L DD +  L+ +++ H+ E H   +          L K  V   I+ +D + M +   V+ T    T +P        S++GL+P GA+ NHSC PNT                 +   RS  + +ICA       +EL  +YL+      T   RR L+M   F C C RC   +E
Sbjct:   37 GRGLFAARDIIQGEEIAVDAPLILGPRCYKKYPPMCVNCYKTGITLFPCDRGCGLPICSDA-CENSKD-------HVERECDQLKKWRPTCGSMFSKD-----LLLSVLPVRSLALGDDDK-ELVMAMKGHEGELHGREIE---------LLKRNVGEEINRKDEEFMLKVCRVMDTNAMETGTPADESRTI-SLRGLYPLGAMQNHSCTPNT-----------------RHYFRSNDLMSICATVDIKKDEELTMTYLNP--LWDTYIRRRYLMMSKHFDCRCRRCSDPSE 285          
BLAST of mRNA_Ecto-sp13_S_contig746.18645.1 vs. uniprot
Match: A0A482R4M8_9EURY (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R4M8_9EURY)

HSP 1 Score: 65.5 bits (158), Expect = 3.420e-7
Identity = 90/340 (26.47%), Postives = 128/340 (37.65%), Query Frame = 3
Query:  402 VEVR-FDPKRGRGLFA------LRDIPSGTEVMRVPAAAAVLLDRSRKGSCSGCLL---PTDTVGSLEACHGFPLSFCAGCKKSGTVGV------------------LGGVHKSATRELTKELNTMCATSVGVDKDSLRLAADVFVRRKAGLFDDSEWGLLNSLESHDNEAHTM----------SLAPAELHKCTHLFKTLVDTNISDEDVQAMYRRQAVVITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCV---------------AESSSPEGRPVVKQVLRSIRNICAGDELCYSYLSSGSAVGTVSERRELLMGWGFRCACARC 1262
            +EVR  +   GRG+FA       R +P+GT ++    AA   L  S  G C  C+L   P        AC+       AG K  G                      L  + K  T+ L K   T  ATSV ++   + + +   V  +A L   +  G  + +E+H  E+  +          S  P  + +  H  +T    N    D   M+ R A                       G+FP GAL+NHSC PN    CV               A+   P   P+V QV R+ R + AG++LC+SY+    A      R EL   +GF C C  C
Sbjct:   27 IEVRECEDGSGRGVFARATDAAARCMPAGTLILANAPAAVASLPTS--GYCDTCILQRAPNRCARCKVACYCSRACQLAGWKGEGHAAACTSTAALSHSLPHHALVKLKTIQKLMTKSLLKSAFT--ATSVKLETHGVYVPSWADVAAQATLPARAAVG--DDVEAHGAESDALLRVALENKWVSSEPGLVEEARHALRTFDCNNFMVVD-DLMHPRGA-----------------------GVFPAGALLNHSCAPN----CVPMYLPSTHPEVVALQAKDMPPLVAPLV-QVFRTTRAVSAGEQLCHSYVEL--AATQQQRRHELQDAYGFTCCCTVC 329          
BLAST of mRNA_Ecto-sp13_S_contig746.18645.1 vs. uniprot
Match: A0A835YND3_9STRA (SET domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YND3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.560e-7
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 3
Query:  951 ITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVAESSSPEGRPVVKQVLRSIRNICAGDELCYSYLSSGSAVGTVSERRELLMG-WGFRCACARC 1262
            I  NAH +  + S    G   GLFP  +++NHSC+PN    C +  +     PV+    R++RNI AG+ELCYSY+       T ++RR +L   + F C C RC
Sbjct:  115 IQSNAHAMVDDRSSSIRGL--GLFPLASMLNHSCIPNVAL-CFSFGTE-HNVPVL--TFRALRNISAGEELCYSYVD---LYQTTAQRRHMLQAAYHFTCGCVRC 210          
BLAST of mRNA_Ecto-sp13_S_contig746.18645.1 vs. uniprot
Match: A0A835T5G6_CHLIN (SET domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T5G6_CHLIN)

HSP 1 Score: 65.1 bits (157), Expect = 5.070e-7
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = 3
Query: 1014 GLFPCGALVNHSCLPNTFFHCVAESSSPEGRPVVKQVLRSIRNICAGDELCYSYLSSGSAVGTVSERRELLMGWGFRCACARCQSE 1271
            GL+   AL+NHSC P    +CV  +           V+R++R I AG+E+C SYL    A      RR LL  +GF CAC+RC+ E
Sbjct:  377 GLWTEHALINHSCAPAVCQYCVGRT----------MVVRAVRRIRAGEEVCDSYLGPELAAPLQVRRRALLAQYGFTCACSRCRLE 452          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig746.18645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPE5_ECTSI5.200e-31685.07SET and MYND domain containing 1b n=1 Tax=Ectocarp... [more]
A0A397UIR2_9GLOM5.030e-1224.76Uncharacterized protein n=2 Tax=Gigaspora TaxID=48... [more]
A0A7S1AGI2_NOCSC4.800e-1127.57Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A834Y2W5_9HYME2.030e-927.18SET domain-containing protein n=2 Tax=Aphidius gif... [more]
A0A1Y2D3F3_9FUNG1.240e-827.30SET domain-containing protein (Fragment) n=1 Tax=R... [more]
A0A7S1HKR9_HEMAN7.940e-839.76Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
UPI0005AC62801.120e-726.37protein msta, isoform B-like n=1 Tax=Fopius arisan... [more]
A0A482R4M8_9EURY3.420e-726.47SET domain-containing protein-lysine N-methyltrans... [more]
A0A835YND3_9STRA3.560e-738.10SET domain-containing protein n=2 Tax=Tribonema mi... [more]
A0A835T5G6_CHLIN5.070e-740.70SET domain-containing protein n=1 Tax=Chlamydomona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig746contigEcto-sp13_S_contig746:10066..14303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score144.1
Seed ortholog evalue2.2e-31
Seed eggNOG ortholog2880.D7FPE3
Model size2473
KEGG koko:K11426
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-14_004640.1
Cds size1821
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig746.18645.1prot_Ecto-sp13_S_contig746.18645.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig746 10638..14223 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464015.2588053-UTR-Ecto-sp13_S_contig746:10065..106371681464015.2588053-UTR-Ecto-sp13_S_contig746:10065..10637Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig746 10066..10637 -
1681464015.3506613-UTR-Ecto-sp13_S_contig746:14223..143031681464015.3506613-UTR-Ecto-sp13_S_contig746:14223..14303Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig746 14224..14303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464015.2843237-CDS-Ecto-sp13_S_contig746:10637..111661681464015.2843237-CDS-Ecto-sp13_S_contig746:10637..11166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig746 10638..11166 -
1681464015.2946908-CDS-Ecto-sp13_S_contig746:11357..115211681464015.2946908-CDS-Ecto-sp13_S_contig746:11357..11521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig746 11358..11521 -
1681464015.3078153-CDS-Ecto-sp13_S_contig746:11975..122341681464015.3078153-CDS-Ecto-sp13_S_contig746:11975..12234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig746 11976..12234 -
1681464015.3196652-CDS-Ecto-sp13_S_contig746:12666..135081681464015.3196652-CDS-Ecto-sp13_S_contig746:12666..13508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig746 12667..13508 -
1681464015.3326232-CDS-Ecto-sp13_S_contig746:14196..142231681464015.3326232-CDS-Ecto-sp13_S_contig746:14196..14223Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig746 14197..14223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig746.18645.1

>prot_Ecto-sp13_S_contig746.18645.1 ID=prot_Ecto-sp13_S_contig746.18645.1|Name=mRNA_Ecto-sp13_S_contig746.18645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=607bp
MPSFHEGCLVLYRSTGLLYRVVRWDQETELLQLAPAASRPNNGKSSRNAA
DKNDNRTGVTSQRLRLAFEHMVDLVDESASESSPPTKSFGDGDPTQYARR
TANLDARVEVRFDPKRGRGLFALRDIPSGTEVMRVPAAAAVLLDRSRKGS
CSGCLLPTDTVGSLEACHGFPLSFCAGCKKSGTVGVLGGVHKSATRELTK
ELNTMCATSVGVDKDSLRLAADVFVRRKAGLFDDSEWGLLNSLESHDNEA
HTMSLAPAELHKCTHLFKTLVDTNISDEDVQAMYRRQAVVITRNAHTVSP
NTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVAESSSPEGRPVVKQVLR
SIRNICAGDELCYSYLSSGSAVGTVSERRELLMGWGFRCACARCQSEAEE
EKRLRRQRTPTDERALKMLERLAQISALGQRPHAIWSSGQQTTVDEATLV
TKHFYIRKILPHVFTRPTYCLVDSRKNALALREEAYMPDLQIIAEFYSRE
KGKRLSPMLQYRVAVLMMEVTALVGATNLFFRFMVCGFAADELSELRNAM
AITCRQQQYMFATKVEVCDLGEAQVTKKLEGIRAVGKFARTDARQLHELY
YGGQSK*
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mRNA from alignment at Ecto-sp13_S_contig746:10066..14303-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig746.18645.1 ID=mRNA_Ecto-sp13_S_contig746.18645.1|Name=mRNA_Ecto-sp13_S_contig746.18645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4238bp|location=Sequence derived from alignment at Ecto-sp13_S_contig746:10066..14303- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCGCCCCCCCTCGCTCGGTGTTCCATTATGCGGTGCCCCCTGTTTT TTCAATACCACCCACCCACACAGCCACAGCATGCCATCTTTTCACGAGGG TTGCCTGGTAAGTGTAGCAATACATTATTCCTGCGACACCCTTTCATTGA AAACTCGGTTTTCTCTACTTTGACTGTACCACTCGCTGATGGCATGTGAG GTTTGAACAGATGCTACAATTGTCCCGCACATTGATCTCCGTCGGGCTAT GTAGCTTTCTACCTGCGACACACGTGGGTAGATACACACATGTTGGGGGC TCTTGCCGTCGTTGACACCAGCTGGTTGACACCCGTTTTTCAACTCCTGT GTGGAGTTTCGTGTGCATGGATCTTCTCTTCGTCGCCAATTGATCTGTTG GAACCCATCGCAACAGCAGCATCAACATGTCGGATGCATATCTAAGTGAA ACAAACACGGGTGATGCTTCTGCTTTGTGCTTTAGTCTTTGTCTAAACAG CAGTATGCACAGGAGGGGAAAAGTGAGTAGAGCAGGCAGAAATCAACGAG TGAGGAAATCGGGACGACAGCATAATGTTAACTGTTCATGTCTGGAGCAA GGATTCATGTCTGGAGAAAGGACGGCAATTTGACGTGCCACTCTCTCTCT GACCATGCCGTATTTCAATACTTTTCGGGGCTGAATTTGAGTTTGGTACA TACGCCACGACCAACCGCGGCCTGCGAATCAACACGACGACAACTTCATT CATTCACCGTTTGTGTTTCCCCCGCCTTCCGTGCCCGGCCTTCAGGTGCT CTACCGTTCCACGGGACTACTATACAGGGTTGTGCGATGGGACCAAGAAA CCGAGTTGCTTCAGTTGGCACCTGCTGCCTCCCGCCCGAACAACGGAAAG AGCAGCAGGAATGCCGCCGACAAAAACGACAATCGAACAGGGGTTACGTC CCAACGCCTGAGATTGGCTTTCGAACACATGGTCGATCTAGTCGACGAAA GTGCCAGTGAGTCTTCACCACCGACAAAAAGTTTCGGCGACGGTGACCCG ACCCAGTATGCCCGACGTACCGCGAACCTCGACGCCCGTGTCGAGGTCCG ATTCGACCCGAAGCGAGGCCGCGGATTGTTCGCACTGCGAGATATTCCTT CGGGGACAGAGGTGATGCGAGTGCCCGCGGCAGCGGCAGTGTTGCTGGAT CGCAGCAGGAAGGGCTCGTGCAGTGGGTGTCTGCTGCCGACCGACACAGT TGGCAGCCTGGAGGCGTGCCACGGCTTCCCCCTCAGCTTCTGTGCTGGGT GCAAGAAGTCTGGCACCGTAGGCGTCTTAGGCGGTGTTCATAAAAGCGCC ACGCGCGAGCTCACGAAGGAGTTGAACACGATGTGCGCGACAAGTGTTGG AGTTGATAAGGACAGCCTGAGACTTGCGGCCGATGTGTTCGTGCGGAGAA AGGCAGGCTTATTCGATGACTCTGAATGGGGCTTGCTCAACAGTCTCGAG AGTCACGACAACGAGGCCCACACAATGAGCCTAGCCCCTGCCGAGCTCCA TAAGTGTACCCATCTGTTCAAGACCCTGGTGGATACCAACATTTCGGACG AGGACGTCCAGGCGATGTACCGCAGGCAAGCAGTCGTGTTCGGCGCCACT GCAGTTCAATACTGGCGTTTGGGACTCCCAGAGTGAAATGAGGTTGAGGA AGACGTGTACAGATTCCGTTACCGTACTGTGGCGAGGGGTTGGCGCGTAG CCTTCCTCTCTTGAGCCAGTTGTTTTTAAAGAGTTGTAGGCTATAGAAGT ACCTATCCGGACAGTTTCGCCTCGAACTATTGTTGAACCATCATCTTCAC TCCAAGCACGCCATTCTGCGTGCGGTTTTGACCCCACACGCTGTTTTCGG TAGTCGCACCTGTTCCGCGGTCATCGTCTCCCCCCTTCGAAACCATACCT CGTTTTTCTTCGCCCTATGGTACATGGGGCCGTAAGCGCAACCTGCTCAC GCACTGCAATGTTGCCCACTTCACCGACCACACCATTTGTCCCACCATGC GCACCGTAACTGTCATCAGGATCACTCGCAACGCACACACGGTGTCCCCC AACACATCTAAGCCTGGCTTTGGCTCGGTGCAAGGGCTCTTCCCCTGTGG GGCTTTGGTGAATCACTCTTGCCTGCCCAACACGTTTTTCCACTGCGTGG CGGAATCTTCTTCTCCGGAGGGCAGGCCGGTCGTTAAGCAGGTGCTGCGA AGCATCCGCAACATCTGTGCGGGAGACGAGCTCTGCTACTCGTACCTGTC CAGTGGATCCGCCGTCGGTACCGTGTCTGTGAGTGGCTCTCGGGGATGGG ACATGAACACAAAGATTATGGGTCGATTTGATTTACACAGCAGGGCTTGT GGAATATGGTCGCCTCGGCAAATGGCAAGAACCTTGGGTCTGCGGAATGT TTTAGAGGCTGAAACATCGTGTCCCCAGTTCATGCACGAGCCCCAGGTTC CGCCGAGGTCGGAAAAGAATCGCTACGGTTCGTATCAAACACCGCGGAGA GCCCACGTAGGATTGCTTCTCAAGACACAGTCAACATCAAAATTTAGGCG TATGTGGGGCAAAAACGCCCTTGTCCAATCCCCATCAACTCTAGAAAAGG CACCCCAACAGCAGTGGTGTGGGCCTTGCCATCTTGCGCATGACACTACA CCTGCCGCAGCACTGTTGTGTGCGCCGCTAAGAAGTACTTTCCTTCGTGT TATGGCGTCATGGTGTTTGTCGTCATCGGCAGGAACGCCGCGAGCTCCTT ATGGGCTGGGGCTTTCGATGCGCTTGCGCGAGGTGCCAGAGCGAAGCTGA AGAGGAGAAACGCCTCCGAAGACAACGAACCCCGACCGACGAAAGGGCAC TGAAAATGCTTGAACGGCTTGCGCAGATCTCGGCCCTCGGGCAAAGGTGA GTGCAGGTGACCGCTGGCACTTGTCTATTGGTCGAGTTTCGGGTTTCCTG AGCTCGTTCAGCAAGCCGGTACAATTGCGTCTCCGTCAGCCGCACTTCGT GCGGCATGGGGTCTTCGCTGGTACCCCCCGCAATAACCCGGCCCTCCCGC GCCTTTCCTTTTTTGCGTTCCGGTTGTTTTTTCGCAGGCCACATGCGATC TGGTCTAGCGGCCAGCAAACGACTGTGGATGAAGCTACGCTTGTGACGAA ACACTTCTACATTCGCAAGATATTGCCTCACGTTTTCACCCGACCCACCT ACTGTTTGGTCGATTCCAGGAAAAACGCACTAGCCCTGAGGGAAGAGGCG TACATGCCGGACCTCCAGATTATCGCCGAATTCTACTCGCGCGAGAAAGG GAAGCGCCTCTCACCAATGCTACAATATCGTGTGGCGGTCTTGATGATGG AGGTAACGGCCCTCGTCGGCGCAACGAACCTGTTTTTCCGATTCATGGTT TGCGGATTCGCAGCAGATGAGTTGTCCGAGCTACGCAACGCCATGGCGAT CACGTGTCGCCAGCAGCAGTACATGTTCGCCACGAAAGTCGAAGTTTGTG ATCTGGGGGAGGCGCAAGTGACGAAGAAACTGGAGGGTATCAGGGCTGTT GGGAAGTTCGCTCGCACTGATGCGCGGCAACTCCATGAGCTGTACTACGG TGGACAATCGAAGTAGAGCATCGGCCGCACTGAAATGACCCGCCCTGTAC GTACTTTTGGTCAATAATCTCACCGAGTGAGGACGTCTTTGTTGCACAGA GACAACTGAAGACTCGTTGTGTGTATATGTGATTTGTTTTTGTCCTCTGG CGGACTGGATAAAATAGATCTCATTCCGCGTTGATTAGCATGCTACATAC TTGTAGCACGCGGTCTACCTGCGTGGTCTGTGGTGAAAGTTGATGTTGTG GCTTCCTCCCTGCTTGTGTTGTTTTCTTTGAATGTTGGAGGAAGACTTTG CGCCCCCAGTTCTTAAACATTTTTGAACAGGAGGAGGCCTCAGAAAATCC GGCGTGCGTCGTCCGGTGGTCACAGGCTTGCCATAGCCCGCATTTATCAT TGTGGTGCACGTTTTGGCGGTGGTAGAAGTCATTTTTAGGACCTGTTCCC TCCGTCTGCCCTATATCCTTCGGTGGTTCATTCCAAATTCCATTTTTACG TTGCCGGCGTACGCGCTGATGCTTGTGTCACAACCTCAAGCACGTGTAGC GAATCAAATGACACAGGGGGGGGGGTCTTCAACACCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig746:10066..14303-

>mRNA_Ecto-sp13_S_contig746.18645.1 ID=mRNA_Ecto-sp13_S_contig746.18645.1|Name=mRNA_Ecto-sp13_S_contig746.18645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1821bp|location=Sequence derived from alignment at Ecto-sp13_S_contig746:10066..14303- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCATCTTTTCACGAGGGTTGCCTGGTGCTCTACCGTTCCACGGGACT
ACTATACAGGGTTGTGCGATGGGACCAAGAAACCGAGTTGCTTCAGTTGG
CACCTGCTGCCTCCCGCCCGAACAACGGAAAGAGCAGCAGGAATGCCGCC
GACAAAAACGACAATCGAACAGGGGTTACGTCCCAACGCCTGAGATTGGC
TTTCGAACACATGGTCGATCTAGTCGACGAAAGTGCCAGTGAGTCTTCAC
CACCGACAAAAAGTTTCGGCGACGGTGACCCGACCCAGTATGCCCGACGT
ACCGCGAACCTCGACGCCCGTGTCGAGGTCCGATTCGACCCGAAGCGAGG
CCGCGGATTGTTCGCACTGCGAGATATTCCTTCGGGGACAGAGGTGATGC
GAGTGCCCGCGGCAGCGGCAGTGTTGCTGGATCGCAGCAGGAAGGGCTCG
TGCAGTGGGTGTCTGCTGCCGACCGACACAGTTGGCAGCCTGGAGGCGTG
CCACGGCTTCCCCCTCAGCTTCTGTGCTGGGTGCAAGAAGTCTGGCACCG
TAGGCGTCTTAGGCGGTGTTCATAAAAGCGCCACGCGCGAGCTCACGAAG
GAGTTGAACACGATGTGCGCGACAAGTGTTGGAGTTGATAAGGACAGCCT
GAGACTTGCGGCCGATGTGTTCGTGCGGAGAAAGGCAGGCTTATTCGATG
ACTCTGAATGGGGCTTGCTCAACAGTCTCGAGAGTCACGACAACGAGGCC
CACACAATGAGCCTAGCCCCTGCCGAGCTCCATAAGTGTACCCATCTGTT
CAAGACCCTGGTGGATACCAACATTTCGGACGAGGACGTCCAGGCGATGT
ACCGCAGGCAAGCAGTCGTGATCACTCGCAACGCACACACGGTGTCCCCC
AACACATCTAAGCCTGGCTTTGGCTCGGTGCAAGGGCTCTTCCCCTGTGG
GGCTTTGGTGAATCACTCTTGCCTGCCCAACACGTTTTTCCACTGCGTGG
CGGAATCTTCTTCTCCGGAGGGCAGGCCGGTCGTTAAGCAGGTGCTGCGA
AGCATCCGCAACATCTGTGCGGGAGACGAGCTCTGCTACTCGTACCTGTC
CAGTGGATCCGCCGTCGGTACCGTGTCTGAACGCCGCGAGCTCCTTATGG
GCTGGGGCTTTCGATGCGCTTGCGCGAGGTGCCAGAGCGAAGCTGAAGAG
GAGAAACGCCTCCGAAGACAACGAACCCCGACCGACGAAAGGGCACTGAA
AATGCTTGAACGGCTTGCGCAGATCTCGGCCCTCGGGCAAAGGCCACATG
CGATCTGGTCTAGCGGCCAGCAAACGACTGTGGATGAAGCTACGCTTGTG
ACGAAACACTTCTACATTCGCAAGATATTGCCTCACGTTTTCACCCGACC
CACCTACTGTTTGGTCGATTCCAGGAAAAACGCACTAGCCCTGAGGGAAG
AGGCGTACATGCCGGACCTCCAGATTATCGCCGAATTCTACTCGCGCGAG
AAAGGGAAGCGCCTCTCACCAATGCTACAATATCGTGTGGCGGTCTTGAT
GATGGAGGTAACGGCCCTCGTCGGCGCAACGAACCTGTTTTTCCGATTCA
TGGTTTGCGGATTCGCAGCAGATGAGTTGTCCGAGCTACGCAACGCCATG
GCGATCACGTGTCGCCAGCAGCAGTACATGTTCGCCACGAAAGTCGAAGT
TTGTGATCTGGGGGAGGCGCAAGTGACGAAGAAACTGGAGGGTATCAGGG
CTGTTGGGAAGTTCGCTCGCACTGATGCGCGGCAACTCCATGAGCTGTAC
TACGGTGGACAATCGAAGTAG
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