mRNA_Ecto-sp13_S_contig74577.18644.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74577.18644.1
Unique NamemRNA_Ecto-sp13_S_contig74577.18644.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74577.18644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74577contigEcto-sp13_S_contig74577:140..546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size408
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464015.213392-UTR-Ecto-sp13_S_contig74577:139..2191681464015.213392-UTR-Ecto-sp13_S_contig74577:139..219Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig74577 140..219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464015.2249517-CDS-Ecto-sp13_S_contig74577:219..5461681464015.2249517-CDS-Ecto-sp13_S_contig74577:219..546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74577 220..546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74577.18644.1prot_Ecto-sp13_S_contig74577.18644.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74577 220..546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74577.18644.1

>prot_Ecto-sp13_S_contig74577.18644.1 ID=prot_Ecto-sp13_S_contig74577.18644.1|Name=mRNA_Ecto-sp13_S_contig74577.18644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MSISPDRFDSPGVLAWFVSKRTPQAVVATACRWKHHSKKRPRSPRTMTQL
CILGVHTSTGKNPPIQNTSHNPEPSMRSSATCIACLWRQQDAGKVGFLFL
SWHRLYRSP
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mRNA from alignment at Ecto-sp13_S_contig74577:140..546+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74577.18644.1 ID=mRNA_Ecto-sp13_S_contig74577.18644.1|Name=mRNA_Ecto-sp13_S_contig74577.18644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=407bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74577:140..546+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTAGCCTGATTTCCCAAGAGATTGCTTGGCCTGATTACATTTGGATACC
TCATGCCTTCATACTCCCTTTCGCCAACATATGAGCATTTCACCCGATAG
ATTTGATTCACCTGGCGTTTTGGCGTGGTTTGTCAGCAAGAGGACACCGC
AGGCAGTGGTAGCCACCGCGTGCCGCTGGAAGCATCATAGCAAAAAACGG
CCGAGAAGTCCCCGTACAATGACACAATTATGTATTCTTGGAGTACACAC
ATCAACCGGAAAGAACCCACCGATACAGAACACGAGCCACAATCCTGAGC
CTTCGATGCGGTCAAGTGCAACATGCATTGCGTGCTTGTGGCGACAGCAG
GATGCAGGGAAAGTTGGTTTCTTGTTCTTGTCCTGGCATCGCCTTTACAG
AAGTCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74577:140..546+

>mRNA_Ecto-sp13_S_contig74577.18644.1 ID=mRNA_Ecto-sp13_S_contig74577.18644.1|Name=mRNA_Ecto-sp13_S_contig74577.18644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74577:140..546+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCATTTCACCCGATAGATTTGATTCACCTGGCGTTTTGGCGTGGTT
TGTCAGCAAGAGGACACCGCAGGCAGTGGTAGCCACCGCGTGCCGCTGGA
AGCATCATAGCAAAAAACGGCCGAGAAGTCCCCGTACAATGACACAATTA
TGTATTCTTGGAGTACACACATCAACCGGAAAGAACCCACCGATACAGAA
CACGAGCCACAATCCTGAGCCTTCGATGCGGTCAAGTGCAACATGCATTG
CGTGCTTGTGGCGACAGCAGGATGCAGGGAAAGTTGGTTTCTTGTTCTTG
TCCTGGCATCGCCTTTACAGAAGTCCG
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