prot_Ecto-sp13_S_contig7456.18643.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig7456.18643.1
Unique Name	prot_Ecto-sp13_S_contig7456.18643.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	308

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7456.18643.1 vs. uniprot
Match: A0A6H5KY58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY58_9PHAE)

HSP 1 Score: 379 bits (973), Expect = 1.920e-123
Identity = 238/308 (77.27%), Postives = 244/308 (79.22%), Query Frame = 0

Query:    1 DTYTQIARSLSTGRLLASPPMSXXXXXXXXXXXXXXXXXXDTESSDDSYSTGESDTESDDEAFLEKRATVSGVDIKLGNAAAAQPASSFLLGTATATTPGDGSAVVTTQPPQGAPWPSSNDGRRAAPRRRSMFAPGGNRLVYKRAFXXXXXXXXXXXXXXXXXXXXXXXXXDAVALDRSFTSTAEEFGSAWDALRTCASFRQDLRGHKEV-EGRCRIGRLPEVETLAAHLRGQGFVVVASGPVADGRTKIYACACGIGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA 307
            DTYTQIARSLSTGRLLASPPMSXXXXXXXXXXXXXXXXX DTESS DSYSTGESDTESDDEAFLE RATVSGVDIKLGNAAAAQPASSFLLGTATATT GD SAVVTTQP QGAPWPSSNDG RAAPRRRSMFAPGGNRLVYKRAF                            A + S T   EE   A   +R+       L  H +V   RCRIGRLPEVETLA HLR QGFVVVASGP+ADGRT IYACA G+GVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA
Sbjct:  463 DTYTQIARSLSTGRLLASPPMSXXXXXXXXXXXXXXXXXDDTESSGDSYSTGESDTESDDEAFLETRATVSGVDIKLGNAAAAQPASSFLLGTATATTAGDESAVVTTQPTQGAPWPSSNDGPRAAPRRRSMFAPGGNRLVYKRAFS---------------------------ARESSSTEGGEEKKCAPKEIRSSIL---PLTPHAKVYRFRCRIGRLPEVETLAGHLRVQGFVVVASGPLADGRTSIYACARGMGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA 740

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7456.18643.1 vs. uniprot
Match: D8LJ52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ52_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 3.000e-108
Identity = 225/311 (72.35%), Postives = 226/311 (72.67%), Query Frame = 0

Query:    1 DTYTQIARSLSTGRLLASPPMSXXXXXXXXXXXXXXXXXXDTESSDDSYSTGESDTESDD----EAFLEKRATVSGVDIKLGNAAAAQPASSFLLGTATATTPGDGSAVVTTQPPQGAPWPSSNDGRRAAPRRRSMFAPGGNRLVYKRAFXXXXXXXXXXXXXXXXXXXXXXXXXDAVALDRSFTSTAEEFGSAWDALRTCASFRQDLRGHKEVEGRCRIGRLPEVETLAAHLRGQGFVVVASGPVADGRTKIYACACGIGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA 307
            D   +IARSLSTGRLLASPPM XXXXXXXXXXXXXXXXXX TESSDDSYSTGESDT        EAFLEKRATVSGVDIKLGNAAAAQPASSFLLGTATATT GDGSAVVTTQP QGAPWPSSN G RAAPRRRSMFAPGGNRLVYKRAF                                                                  RCRIGRLPEVETLA HLRGQGFVVVASGPVADGRTKIYACA GIGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA
Sbjct:  863 DKDVEIARSLSTGRLLASPPMXXXXXXXXXXXXXXXXXXXXTESSDDSYSTGESDTXXXXXXXXEAFLEKRATVSGVDIKLGNAAAAQPASSFLLGTATATTLGDGSAVVTTQPTQGAPWPSSNGGPRAAPRRRSMFAPGGNRLVYKRAF----------------------------------------------------------------SARCRIGRLPEVETLAGHLRGQGFVVVASGPVADGRTKIYACARGIGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA 1109

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig7456.18643.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig7456.18643.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KY58_9PHAE	1.920e-123	77.27	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LJ52_ECTSI	3.000e-108	72.35	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012295	TBP domain superfamily	GENE3D	3.30.310.10		coord: 166..301 e-value: 3.2E-8 score: 35.2

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig7456	contig	Ecto-sp13_S_contig7456:4666..7446 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig7456.18643.1	mRNA_Ecto-sp13_S_contig7456.18643.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig7456 4666..7446 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig7456.18643.1 ID=prot_Ecto-sp13_S_contig7456.18643.1|Name=mRNA_Ecto-sp13_S_contig7456.18643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp
DTYTQIARSLSTGRLLASPPMSSEEGSSADESGGRRGRREDTESSDDSYS
TGESDTESDDEAFLEKRATVSGVDIKLGNAAAAQPASSFLLGTATATTPG
DGSAVVTTQPPQGAPWPSSNDGRRAAPRRRSMFAPGGNRLVYKRAFSARS
SSDDSTIGGENTANGGAPPPPDAVALDRSFTSTAEEFGSAWDALRTCASF
RQDLRGHKEVEGRCRIGRLPEVETLAAHLRGQGFVVVASGPVADGRTKIY
ACACGIGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVI
GDHQPIA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012295	TBP_dom_sf