mRNA_Ecto-sp13_S_contig7456.18643.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7456.18643.1
Unique NamemRNA_Ecto-sp13_S_contig7456.18643.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7456.18643.1 vs. uniprot
Match: A0A6H5KY58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY58_9PHAE)

HSP 1 Score: 379 bits (973), Expect = 1.920e-123
Identity = 238/308 (77.27%), Postives = 244/308 (79.22%), Query Frame = 1 
Query:    1 DTYTQIARSLSTGRLLASPPMSXXXXXXXXXXXXXXXXXXDTESSDDSYSTGESDTESDDEAFLEKRATVSGVDIKLGNAAAAQPASSFLLGTATATTPGDGSAVVTTQPPQGAPWPSSNDGRRAAPRRRSMFAPGGNRLVYKRAFXXXXXXXXXXXXXXXXXXXXXXXXXDAVALDRSFTSTAEEFGSAWDALRTCASFRQDLRGHKEV-EGRCRIGRLPEVETLAAHLRGQGFVVVASGPVADGRTKIYACACGIGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA 921
            DTYTQIARSLSTGRLLASPPMSXXXXXXXXXXXXXXXXX DTESS DSYSTGESDTESDDEAFLE RATVSGVDIKLGNAAAAQPASSFLLGTATATT GD SAVVTTQP QGAPWPSSNDG RAAPRRRSMFAPGGNRLVYKRAF                            A + S T   EE   A   +R+       L  H +V   RCRIGRLPEVETLA HLR QGFVVVASGP+ADGRT IYACA G+GVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA
Sbjct:  463 DTYTQIARSLSTGRLLASPPMSXXXXXXXXXXXXXXXXXDDTESSGDSYSTGESDTESDDEAFLETRATVSGVDIKLGNAAAAQPASSFLLGTATATTAGDESAVVTTQPTQGAPWPSSNDGPRAAPRRRSMFAPGGNRLVYKRAFS---------------------------ARESSSTEGGEEKKCAPKEIRSSIL---PLTPHAKVYRFRCRIGRLPEVETLAGHLRVQGFVVVASGPLADGRTSIYACARGMGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA 740
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BLAST of mRNA_Ecto-sp13_S_contig7456.18643.1 vs. uniprot
Match: D8LJ52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ52_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 3.000e-108
Identity = 225/311 (72.35%), Postives = 226/311 (72.67%), Query Frame = 1 
Query:    1 DTYTQIARSLSTGRLLASPPMSXXXXXXXXXXXXXXXXXXDTESSDDSYSTGESDTESDD----EAFLEKRATVSGVDIKLGNAAAAQPASSFLLGTATATTPGDGSAVVTTQPPQGAPWPSSNDGRRAAPRRRSMFAPGGNRLVYKRAFXXXXXXXXXXXXXXXXXXXXXXXXXDAVALDRSFTSTAEEFGSAWDALRTCASFRQDLRGHKEVEGRCRIGRLPEVETLAAHLRGQGFVVVASGPVADGRTKIYACACGIGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA 921
            D   +IARSLSTGRLLASPPM XXXXXXXXXXXXXXXXXX TESSDDSYSTGESDT        EAFLEKRATVSGVDIKLGNAAAAQPASSFLLGTATATT GDGSAVVTTQP QGAPWPSSN G RAAPRRRSMFAPGGNRLVYKRAF                                                                  RCRIGRLPEVETLA HLRGQGFVVVASGPVADGRTKIYACA GIGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA
Sbjct:  863 DKDVEIARSLSTGRLLASPPMXXXXXXXXXXXXXXXXXXXXTESSDDSYSTGESDTXXXXXXXXEAFLEKRATVSGVDIKLGNAAAAQPASSFLLGTATATTLGDGSAVVTTQPTQGAPWPSSNGGPRAAPRRRSMFAPGGNRLVYKRAF----------------------------------------------------------------SARCRIGRLPEVETLAGHLRGQGFVVVASGPVADGRTKIYACARGIGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA 1109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7456.18643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY58_9PHAE1.920e-12377.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ52_ECTSI3.000e-10872.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7456contigEcto-sp13_S_contig7456:4666..7446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size924
Hectar predicted targeting categoryother localisation
Exons5
Cds size924
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464015.1169827-CDS-Ecto-sp13_S_contig7456:4665..47911681464015.1169827-CDS-Ecto-sp13_S_contig7456:4665..4791Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7456 4666..4791 -
1681464015.1494377-CDS-Ecto-sp13_S_contig7456:5386..55461681464015.1494377-CDS-Ecto-sp13_S_contig7456:5386..5546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7456 5387..5546 -
1681464015.16345-CDS-Ecto-sp13_S_contig7456:5759..59511681464015.16345-CDS-Ecto-sp13_S_contig7456:5759..5951Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7456 5760..5951 -
1681464015.1745148-CDS-Ecto-sp13_S_contig7456:6228..64911681464015.1745148-CDS-Ecto-sp13_S_contig7456:6228..6491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7456 6229..6491 -
1681464015.183959-CDS-Ecto-sp13_S_contig7456:7263..74461681464015.183959-CDS-Ecto-sp13_S_contig7456:7263..7446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7456 7264..7446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7456.18643.1prot_Ecto-sp13_S_contig7456.18643.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7456 4666..7446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7456.18643.1

>prot_Ecto-sp13_S_contig7456.18643.1 ID=prot_Ecto-sp13_S_contig7456.18643.1|Name=mRNA_Ecto-sp13_S_contig7456.18643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp
DTYTQIARSLSTGRLLASPPMSSEEGSSADESGGRRGRREDTESSDDSYS
TGESDTESDDEAFLEKRATVSGVDIKLGNAAAAQPASSFLLGTATATTPG
DGSAVVTTQPPQGAPWPSSNDGRRAAPRRRSMFAPGGNRLVYKRAFSARS
SSDDSTIGGENTANGGAPPPPDAVALDRSFTSTAEEFGSAWDALRTCASF
RQDLRGHKEVEGRCRIGRLPEVETLAAHLRGQGFVVVASGPVADGRTKIY
ACACGIGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVI
GDHQPIA*
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mRNA from alignment at Ecto-sp13_S_contig7456:4666..7446-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7456.18643.1 ID=mRNA_Ecto-sp13_S_contig7456.18643.1|Name=mRNA_Ecto-sp13_S_contig7456.18643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2781bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7456:4666..7446- (Ectocarpus species13 EcNAP12_S_4_19m)
GACACCTACACCCAGATCGCCCGCAGCCTGTCCACGGGACGGCTGCTCGC
TTCCCCTCCCATGAGCTCAGAGGAAGGGTCTTCGGCAGACGAGAGTGGCG
GGAGAAGGGGAAGGAGGGAAGATACCGAGAGCAGCGATGACAGCTACAGC
ACGGGAGAAAGCGACACTGAAAGCGACGACGAGGTGCTGTGTGCCGCGTG
GGGTGATGGGATGGTATAAAGGGAAACCGTATATCTTTCGTGCGTTGACA
AATACCAAGAGCTATGCACGACCACTTTTTTTTTTGTCGTAACCATGAAA
TTTCTTACATTGTTCACGGTTTCGTTTGCACGTGGGCCCACACAAGCTTC
TCGGGGGTATATTCGGAGACTGTATCGCTCGTGCTCTGGTCTCTAGGCTA
TCATTCTTTTAGAAGGCGTGTTGGAAATACCGAGGAAACGTCTGTACGAG
CGGAACGAACGCGTCTCTTCCTTGCTTAGTTTGTAGCCTACCTTCCCACA
GCAGGGAGAGCAATCCCATCACGTGATTAAACTATACTCGCTGAATCTGC
TCGAGATGAAAACACGAACAAGCACCACAAAAGAAGGAGAAAACACAACT
CCTGTATCCCCTTCCTTTATATGAGCTCGGCTAGTGCGTTCAAGCATACC
GAAATGCGTAAAACTGACGCCCTGAGAGTTGAAGGGGGTGAGAACCTGTT
CTTGTCGTTGTTTTTGTAATTATTTTTTATGTGGAAAGTGATGGTGATGG
TGATGCTGCTTAAACTTAGTGGCTTTGACGATGATGGTAGTGGAGATGAT
GATTATATTTCCTCCGACGATACTGAGATAAAAAAAATCGCAATCGTTGG
TATTGCGATGGTCAAGATGAGGAACACAGAGCAGAATTCATTATCATTAT
TGTTGTTTTTAACGTTACGGCTAAGTCCGGGACGCACGACGTCAACTTCA
ATCAGGCGTTCCTCGAAAAACGGGCGACAGTATCAGGCGTCGACATCAAA
CTAGGAAACGCGGCAGCAGCACAACCGGCATCCTCTTTCCTGTTGGGCAC
AGCCACAGCAACAACGCCGGGGGACGGGAGCGCCGTAGTGACGACCCAGC
CTCCACAAGGGGCCCCGTGGCCTTCTTCAAACGATGGCCGTAGAGCAGCG
CCCAGGCGGCGGAGCATGTTCGCGCCGGGGGGCAATCGGCTGGTTTACAA
ACGGGCATTCAGCGCCAGGTGGGTGGGATTTAGGGGTGAGGGCGTTTGAA
CTTTCGCCACCGGTGGACACCAAACAAGTTTCGTTTCCGCCCTGAATCTC
GTATAGCTTCGGCCGATGTCAGCTGATGGTGTACACTGTACCCGCACGTA
TCACAGGGAACCATGCATAGAGCGAATAATAGTGTTTCGTCATTGTCCGG
TAGAGTCGTGCACACAAAATGTGGCAAATCAACCCGTGACTGTTAAGTTT
TCTAACCTCTCCCACGAAACGCTATTACCTTCATGGGCGGGAAAGATCAT
CATCGGACGACAGTACAATCGGCGGGGAGAATACTGCGAATGGCGGCGCC
CCCCCCCCGCCTGACGCGGTCGCTTTGGATAGGTCGTTTACCAGCACGGC
GGAGGAGTTCGGCTCTGCATGGGACGCCCTCCGTACCTGCGCTAGCTTCA
GGCAAGATTTACGGGGGCACAAAGAAGTCGAGGGGAGGTTGGGTAGGATT
AACTGAAGTTGAACGAAGTTGTACTGGACGCGTACGGCCATGACCTCCTC
ACTTGCGTTTATGGTACATGAGTGCCAGATTGAACTTCCTTGGGGGGTGG
AATCTGTTAATACCAATAACATCGACTCACCTTACACTCCGATGGCTGGA
ACTGTAACCACGACAATCTGTCCTTTTAAACGTTTTTGTTGGTTCGAAAG
GTGCCGGATAGGCCGCCTACCGGAGGTGGAAACCCTCGCTGCGCACCTTC
GGGGTCAGGGGTTCGTCGTGGTCGCGTCGGGGCCGGTAGCCGACGGCCGC
ACCAAGATTTACGCGTGCGCCTGCGGGATAGGGGTGGAAGCACTCTTCTT
TGCAGAGCTGGTGCGTTGTTGCTTTCGGCGTGCTTTCGAGCTATGACTTC
CCGCTGCTTTCTCTCTCTTGGCTCTCGCTCTCTGTTCCTTCACTGAGTCT
GCCTTTGCTCCTCTCGCGTGTTCCATCTCTAGTCAATATGCTCGCCCCCC
GCCTACATTTACATTACCTATGTATGTATAGACTGCATGTTTCACGCAAA
CACGCTTCTAGCGTACCCTATTATTTGTTCATGTCCTCAAGCAACAAGAT
GAGAAATGAAGCACGATCGATCGTAGGGTAGTTAGAACCCGCGAGCGGCG
AGGTTGGAGAGATAGAAGGAGGGAGGAGCCAGCGCTAGGAACACGCAAGC
CTCGCGCCTGATTCTCCCTCAAAACTGTCCATTATAAGATTTTTGAAGAA
ACGTACCACGTGAGTTATTTGCACCGACTGTTGACGCGTCTGTGTCGGAA
AGGCTATCGAAAGGGGTGGAGCATGGTCCATGGTCAATTGACGCTTTGAA
CTAAGATCGGCAAGCATACTTAGTACATGACGACACCCCCTACCGGCAAG
GACCTCCCTAACTGCCACGGAACAACAACGAATACATACGGTGCGTGTTG
CTCAGGTGTTCGAGAAGGAGATGCACGAGCTGGCATTCACGTTCAAGTGT
CAGGACGAACGCCTGACGTCGAGGTTCGTGTGCCATATGCACCTGCGTCG
GGTTATCGGCGACCATCAGCCGATCGCATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7456:4666..7446-

>mRNA_Ecto-sp13_S_contig7456.18643.1 ID=mRNA_Ecto-sp13_S_contig7456.18643.1|Name=mRNA_Ecto-sp13_S_contig7456.18643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7456:4666..7446- (Ectocarpus species13 EcNAP12_S_4_19m)
GACACCTACACCCAGATCGCCCGCAGCCTGTCCACGGGACGGCTGCTCGC
TTCCCCTCCCATGAGCTCAGAGGAAGGGTCTTCGGCAGACGAGAGTGGCG
GGAGAAGGGGAAGGAGGGAAGATACCGAGAGCAGCGATGACAGCTACAGC
ACGGGAGAAAGCGACACTGAAAGCGACGACGAGGCGTTCCTCGAAAAACG
GGCGACAGTATCAGGCGTCGACATCAAACTAGGAAACGCGGCAGCAGCAC
AACCGGCATCCTCTTTCCTGTTGGGCACAGCCACAGCAACAACGCCGGGG
GACGGGAGCGCCGTAGTGACGACCCAGCCTCCACAAGGGGCCCCGTGGCC
TTCTTCAAACGATGGCCGTAGAGCAGCGCCCAGGCGGCGGAGCATGTTCG
CGCCGGGGGGCAATCGGCTGGTTTACAAACGGGCATTCAGCGCCAGATCA
TCATCGGACGACAGTACAATCGGCGGGGAGAATACTGCGAATGGCGGCGC
CCCCCCCCCGCCTGACGCGGTCGCTTTGGATAGGTCGTTTACCAGCACGG
CGGAGGAGTTCGGCTCTGCATGGGACGCCCTCCGTACCTGCGCTAGCTTC
AGGCAAGATTTACGGGGGCACAAAGAAGTCGAGGGGAGGTGCCGGATAGG
CCGCCTACCGGAGGTGGAAACCCTCGCTGCGCACCTTCGGGGTCAGGGGT
TCGTCGTGGTCGCGTCGGGGCCGGTAGCCGACGGCCGCACCAAGATTTAC
GCGTGCGCCTGCGGGATAGGGGTGGAAGCACTCTTCTTTGCAGAGCTGGT
GTTCGAGAAGGAGATGCACGAGCTGGCATTCACGTTCAAGTGTCAGGACG
AACGCCTGACGTCGAGGTTCGTGTGCCATATGCACCTGCGTCGGGTTATC
GGCGACCATCAGCCGATCGCATAG
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