mRNA_Ecto-sp13_S_contig74559.18641.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74559.18641.1
Unique NamemRNA_Ecto-sp13_S_contig74559.18641.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74559.18641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74559contigEcto-sp13_S_contig74559:29..380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size354
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464014.987758-UTR-Ecto-sp13_S_contig74559:28..591681464014.987758-UTR-Ecto-sp13_S_contig74559:28..59Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig74559 29..59 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464015.007442-CDS-Ecto-sp13_S_contig74559:59..3801681464015.007442-CDS-Ecto-sp13_S_contig74559:59..380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74559 60..380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74559.18641.1prot_Ecto-sp13_S_contig74559.18641.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74559 60..380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74559.18641.1

>prot_Ecto-sp13_S_contig74559.18641.1 ID=prot_Ecto-sp13_S_contig74559.18641.1|Name=mRNA_Ecto-sp13_S_contig74559.18641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MGSGVDSDSRGGRDVDGCCLRAAERTVWCTAAEVLMEVEVSQAGVRPPRQ
GKQCCSHQTYCPTPLVLPLRGCFRRWCHRGCRFDAVLLRQPKPLLLSFLV
DCWLSLF
back to top

mRNA from alignment at Ecto-sp13_S_contig74559:29..380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74559.18641.1 ID=mRNA_Ecto-sp13_S_contig74559.18641.1|Name=mRNA_Ecto-sp13_S_contig74559.18641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=352bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74559:29..380+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTACGTATCTTCTCGATGCCAAAACGCCGATGGGCAGTGGCGTCGATA
GCGACTCCCGCGGAGGGAGAGATGTGGATGGTTGTTGTTTGCGGGCAGCC
GAGAGGACAGTTTGGTGTACGGCTGCAGAAGTGTTAATGGAGGTGGAGGT
GTCGCAGGCAGGTGTGCGCCCTCCTCGTCAAGGCAAGCAGTGTTGTAGCC
ACCAAACGTACTGTCCCACCCCCCTTGTCCTCCCGTTGCGCGGTTGCTTC
CGTCGCTGGTGCCATCGTGGATGCCGTTTTGATGCTGTGCTGTTGCGTCA
GCCGAAGCCGTTGCTGCTGTCGTTTCTTGTTGATTGCTGGCTGTCTCTGT
TC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74559:29..380+

>mRNA_Ecto-sp13_S_contig74559.18641.1 ID=mRNA_Ecto-sp13_S_contig74559.18641.1|Name=mRNA_Ecto-sp13_S_contig74559.18641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74559:29..380+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCAGTGGCGTCGATAGCGACTCCCGCGGAGGGAGAGATGTGGATGG
TTGTTGTTTGCGGGCAGCCGAGAGGACAGTTTGGTGTACGGCTGCAGAAG
TGTTAATGGAGGTGGAGGTGTCGCAGGCAGGTGTGCGCCCTCCTCGTCAA
GGCAAGCAGTGTTGTAGCCACCAAACGTACTGTCCCACCCCCCTTGTCCT
CCCGTTGCGCGGTTGCTTCCGTCGCTGGTGCCATCGTGGATGCCGTTTTG
ATGCTGTGCTGTTGCGTCAGCCGAAGCCGTTGCTGCTGTCGTTTCTTGTT
GATTGCTGGCTGTCTCTGTTC
back to top