mRNA_Ecto-sp13_S_contig7455.18640.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7455.18640.1
Unique NamemRNA_Ecto-sp13_S_contig7455.18640.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7455.18640.1 vs. uniprot
Match: D8LLA9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA9_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.170e-11
Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 2 
Query:  161 NLALFMDIFDKYIKDDGSPSEVNIDSNNKSCVVQRTYMQAFQRLPLDDAACILDGAAKELG 343
            N ALFMDIFDKYIKD GSP E+NI+S  KS +++RT  +AF++L LDDAA  LD AAKE+G
Sbjct:  347 NFALFMDIFDKYIKD-GSPFEINIESKTKSFIMKRTDKEAFKQLRLDDAARGLDAAAKEVG 406
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BLAST of mRNA_Ecto-sp13_S_contig7455.18640.1 vs. uniprot
Match: D7FKP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKP2_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 6.630e-8
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 2 
Query:  518 SGGHAVLVQPARGLGGPDRASKGKVDTLHVERGGVAEPVALLVEAICVVYV 670
            S    V+++   G G   RASKGKVDTLHVERGGV EP ALLVEAICVV V
Sbjct:   32 SSNQLVVLEDPTG-GNIQRASKGKVDTLHVERGGVTEPAALLVEAICVVCV 81
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7455.18640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLA9_ECTSI1.170e-1165.57RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FKP2_ECTSI6.630e-866.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7455contigEcto-sp13_S_contig7455:4943..6812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score68.2
Seed ortholog evalue2.8e-09
Seed eggNOG ortholog2880.D8LLA9
Model size1127
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
Cds size333
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464014.7599263-UTR-Ecto-sp13_S_contig7455:4942..55611681464014.7599263-UTR-Ecto-sp13_S_contig7455:4942..5561Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7455 4943..5561 -
1681464014.8884218-UTR-Ecto-sp13_S_contig7455:6162..62501681464014.8884218-UTR-Ecto-sp13_S_contig7455:6162..6250Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7455 6163..6250 -
1681464014.9583044-UTR-Ecto-sp13_S_contig7455:6725..68121681464014.9583044-UTR-Ecto-sp13_S_contig7455:6725..6812Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7455 6726..6812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464014.773182-CDS-Ecto-sp13_S_contig7455:5561..57711681464014.773182-CDS-Ecto-sp13_S_contig7455:5561..5771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7455 5562..5771 -
1681464014.7842743-CDS-Ecto-sp13_S_contig7455:6039..61621681464014.7842743-CDS-Ecto-sp13_S_contig7455:6039..6162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7455 6040..6162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7455.18640.1prot_Ecto-sp13_S_contig7455.18640.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7455 5562..6162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7455.18640.1

>prot_Ecto-sp13_S_contig7455.18640.1 ID=prot_Ecto-sp13_S_contig7455.18640.1|Name=mRNA_Ecto-sp13_S_contig7455.18640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MDIFDKYIKDDGSPSEVNIDSNNKSCVVQRTYMQAFQRLPLDDAACILDG
AAKELGSAGVLTCLHGEEDEDFAEPRPQSAARAERVGLARKVATAAATIA
AATAAAASTI*
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mRNA from alignment at Ecto-sp13_S_contig7455:4943..6812-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7455.18640.1 ID=mRNA_Ecto-sp13_S_contig7455.18640.1|Name=mRNA_Ecto-sp13_S_contig7455.18640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1870bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7455:4943..6812- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCCTCAAATGAAAGCCTTCTACGCCACAGAGGGGACGGGCTCGGCGCA
CGAGCGGTTCGTGCGGGCTCGTGCACAACTCACGAAGGTGCTCACAAGCG
GTCTCTACGGCAGATTCCAGAAGACTGACCAGTTCAAACATATCGCGAAG
ACTTATTCGATATCAAAGGCGACGGGCGAAGCAAACGCGAAAAGTAGCAA
AGTGTGAATGACAGAGACACTGCTGTAAATGAGAGTACAGCAGGGAGGGG
AAAAAAAAGAGAGCCATTTTTTTTTGCGCAGCACTCATCAAATCATTGGC
GGAAATGTATGTACATGAAAACTCGGCAATGGGCTAGCGATCAACCGTCA
GAGAGCGCGAGGGATGGAGGGAGGAGTGGGAGGAGTTGTTGGTGGTTGTC
ATGCGACAAGCAGAGGAGGGCCGTCTTCGTCAACAATCGGTCGTTTCTCC
GCCACCCCCGTACTTGCGCTTGCTGTGCCAATGCCTCCCCTTCACACATC
CACACATCCACCCACCCTCCATCTCCCGTCCGTTTCGACAACCTTTCGTC
GTGACCATGCAGGCAGTCCTGGTCTTGGAAGCAGCTTGGGCATTCAAAAC
CTCTGTCCGGGCATCGACCGCCACTGAGGACTCTAAACTTAGCGCTTTTC
ATGGACATTTTTGACAAGTACATCAAGGACGACGGGTCTCCCTCTGAGGT
CAACATCGATAGCAACAACAAGTCCTGTGTCGTGCAAAGGACATACATGC
AGGCCTTCCAGCGTCTTCCCCTGGTACGTACCTGGATGCCCTCGGGGGGA
AATCCGCTTGGTGGTCGACCTGCCGCACGCTGAGAGATACCTGTTGAGGA
ACACACCATCGAGCAAAGAGAGCTGCTCGCTCTACCTGTTCGATCATTGA
TTTCCCTGTCATGGTCAAACTACATTTTCTGTTTCTTCGAATGCTGTCAC
TTCACATCGAGATACCGGGCTGCACGGACTAAACCCTCGTCTCCCCCCCC
ACCCGCCGTCGGGCACACTGTGTCTGGATCAACTCTTTCAGGACGATGCA
GCTTGTATCCTGGATGGCGCCGCTAAAGAACTCGGCTCGGCGGGGGTACT
GACATGCCTCCATGGAGAAGAGGACGAGGACTTCGCGGAGCCCCGTCCAC
AATCCGCCGCGAGGGCGGAGCGGGTGGGGTTGGCCCGCAAAGTGGCCACC
GCTGCCGCCACCATCGCCGCCGCTACCGCCGCCGCCGCCTCTACCATTTA
ATGCAAGGTGTCAGGAGGCCACGCCGTCCTCGTCCAACCAGCTCGTGGTC
TTGGAGGACCCGACCGGGCAAGCAAGGGCAAGGTCGACACGCTACACGTC
GAACGGGGCGGTGTAGCTGAACCGGTCGCGCTATTGGTAGAGGCGATTTG
CGTGGTGTATGTTTGTGTATCATACATAGTTCTGTACCGGACTCTGTTCC
TCGATCGCGATTTTTGTCGATTTTGGTGCGTGATGGTGGAAGGCCTGTAT
GGGGTAGTAACTCGGCATGTGTTTGTCCCCGCTTCTATGCATACCACCGG
TAACCCGTCCTATCCCGTTGGGCTCGCGCGCACACGTGCGGGAAGTTGGC
CAAGAAGAGAACATCGAGTAGGATAATGTGTTGGTTTTTCTACTGTCTGT
TGTACAAGTTCCAACGAACGTGCCTGACAAGCCGTTTTCGGGCCGGCGAA
GCATGTGCGAATTTGATTGTCAGTTTTGGCCCCCAATGGAGAAAGGTCGA
ATACCACGATTGGCGAAGGGGAAAGGGATGTTCGCGCACGATGTGCCCCC
AGGAGCTGTAGAGGATTTTTTGTTGTAAGCTTGGCGCATTGGACCCGTCC
ATCTTCATGTACAGTAGAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7455:4943..6812-

>mRNA_Ecto-sp13_S_contig7455.18640.1 ID=mRNA_Ecto-sp13_S_contig7455.18640.1|Name=mRNA_Ecto-sp13_S_contig7455.18640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7455:4943..6812- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACATTTTTGACAAGTACATCAAGGACGACGGGTCTCCCTCTGAGGT
CAACATCGATAGCAACAACAAGTCCTGTGTCGTGCAAAGGACATACATGC
AGGCCTTCCAGCGTCTTCCCCTGGACGATGCAGCTTGTATCCTGGATGGC
GCCGCTAAAGAACTCGGCTCGGCGGGGGTACTGACATGCCTCCATGGAGA
AGAGGACGAGGACTTCGCGGAGCCCCGTCCACAATCCGCCGCGAGGGCGG
AGCGGGTGGGGTTGGCCCGCAAAGTGGCCACCGCTGCCGCCACCATCGCC
GCCGCTACCGCCGCCGCCGCCTCTACCATTTAA
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