mRNA_Ecto-sp13_S_contig74546.18639.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74546.18639.1
Unique NamemRNA_Ecto-sp13_S_contig74546.18639.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig74546.18639.1 vs. uniprot
Match: D8LG59_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG59_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.800e-73
Identity = 118/124 (95.16%), Postives = 118/124 (95.16%), Query Frame = 1 
Query:    1 VSEMQRMLEKAGHQCVVMSIDDFYLTGAEQDALAARFPTNPLLQVRGNAGTHDLALALRTIRALTRGDDGTSDGDSRDLRPSLPSSAEDPAAQDCVRVPRYDKSARGGKGDRALEGEWSVVSTP 372
            VSEMQRMLE AGH CVVMSIDDFYLTG EQDALAARFPTNPLLQVRGNAGTHDLALALRTIRALTR DDGTSDGDSRDLRPS PSSAEDPAAQDCVRVPRYDKSARGGKGDRA EGEWSVVSTP
Sbjct:  155 VSEMQRMLENAGHHCVVMSIDDFYLTGTEQDALAARFPTNPLLQVRGNAGTHDLALALRTIRALTRRDDGTSDGDSRDLRPSPPSSAEDPAAQDCVRVPRYDKSARGGKGDRAPEGEWSVVSTP 278
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BLAST of mRNA_Ecto-sp13_S_contig74546.18639.1 vs. uniprot
Match: A0A6H5K1H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H5_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 6.840e-73
Identity = 120/124 (96.77%), Postives = 120/124 (96.77%), Query Frame = 1 
Query:    1 VSEMQRMLEKAGHQCVVMSIDDFYLTGAEQDALAARFPTNPLLQVRGNAGTHDLALALRTIRALTRGDDGTSDGDSRDLRPSLPSSAEDPAAQDCVRVPRYDKSARGGKGDRALEGEWSVVSTP 372
            VSEMQRMLEKAGHQCVVMSIDDFYLTGAEQDALAARFPTNPLLQVRGNAGTHDLALALRTIRALTRGDDGTSD DSRDLRPS PSSAEDPAAQDCVRVPRYDKSARGGKGDRA EGEWSVVS P
Sbjct:  326 VSEMQRMLEKAGHQCVVMSIDDFYLTGAEQDALAARFPTNPLLQVRGNAGTHDLALALRTIRALTRGDDGTSDVDSRDLRPSPPSSAEDPAAQDCVRVPRYDKSARGGKGDRAPEGEWSVVSMP 449
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BLAST of mRNA_Ecto-sp13_S_contig74546.18639.1 vs. uniprot
Match: C1N2V1_MICPC (Glycerate kinase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N2V1_MICPC)

HSP 1 Score: 107 bits (266), Expect = 3.550e-25
Identity = 61/129 (47.29%), Postives = 75/129 (58.14%), Query Frame = 1 
Query:    1 VSEMQRMLEKAGHQCVVMSIDDFYLTGAEQDALAARFPTNPLLQVRGNAGTHDLALALRTIRAL-----TRGDDGTSDGDSRDLRPSLPSSAEDPAAQDCVRVPRYDKSARGGKGDRALEGEWSVVSTP 372
            VS + ++LE+ G +   +SIDD YLTGAEQDALAA  PTN LL+ RGNAG+HD+ L + T+RAL      RGD G + G                     VRVPRYDK+ RGG+GDRA    W  V  P
Sbjct:  126 VSTLVKLLERRGTRAASLSIDDVYLTGAEQDALAAANPTNALLRFRGNAGSHDVGLGVETLRALRDVNGVRGDGGEARG--------------------AVRVPRYDKTMRGGRGDRAPVDAWPEVQAP 234
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BLAST of mRNA_Ecto-sp13_S_contig74546.18639.1 vs. uniprot
Match: A0A835YJH1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.180e-23
Identity = 58/115 (50.43%), Postives = 67/115 (58.26%), Query Frame = 1 
Query:   19 MLEKAGHQCVVMSIDDFYLTGAEQDALAARFPTNPLLQVRGNAGTHDLALALRTIRALTRGDDGTSDGDSRDLRPSLPSSAEDPAAQDCVRVPRYDKSARGGKGDRALEGEWSVV 363
            +L   G + V +S+DDFYL  A+QDALAAR   NPLLQ RGNAGTHD+AL + T+RAL                   P  AE       V VPRYDKSARGG+GDR    EWSV 
Sbjct:   76 LLGARGVRAVALSLDDFYLAAADQDALAARSADNPLLQSRGNAGTHDVALCVDTLRALKAA--------XXXXXXXXPGGAE-------VAVPRYDKSARGGRGDRVPRSEWSVA 175
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BLAST of mRNA_Ecto-sp13_S_contig74546.18639.1 vs. uniprot
Match: A0A0G4FG08_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FG08_VITBC)

HSP 1 Score: 101 bits (251), Expect = 9.250e-23
Identity = 55/124 (44.35%), Postives = 69/124 (55.65%), Query Frame = 1 
Query:    1 VSEMQRMLEKAGHQCVVMSIDDFYLTGAEQDALAARFPTNPLLQVRGNAGTHDLALALRTIRALTRGDDGTSDGDSRDLRPSLPSSAEDPAAQDCVRVPRYDKSARGGKGDRALEGEWSVVSTP 372
            V+ ++ + E+ G  C V+SIDDFYLTG EQ+ LA  +P NPLL+ RGNAG+HDL L   T+  L     GTS                       V VPRYDKS R G+GDRA +G+W  V  P
Sbjct:  185 VTFLKTLFEQEGLTCTVVSIDDFYLTGEEQEQLARAYPDNPLLRYRGNAGSHDLPLGRDTLMRLQSAKKGTS-----------------------VAVPRYDKSLREGRGDRAPQGQWPTVEGP 285
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BLAST of mRNA_Ecto-sp13_S_contig74546.18639.1 vs. uniprot
Match: D8U4S9_VOLCA (PRK domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U4S9_VOLCA)

HSP 1 Score: 99.0 bits (245), Expect = 2.260e-22
Identity = 58/124 (46.77%), Postives = 70/124 (56.45%), Query Frame = 1 
Query:    1 VSEMQRMLEKAGHQCVVMSIDDFYLTGAEQDALAARFPTNPLLQVRGNAGTHDLALALRTIRALTRGDDGTSDGDSRDLRPSLPSSAEDPAAQDCVRVPRYDKSARGGKGDRALEGEWSVVSTP 372
            V ++Q++    GH+   +SIDDFYLT  +Q  LAAR P N LLQ+RGNAGTHDL L   T++ L            R+LR          +A D   VPRYDKSA GG GDRA    W VVS P
Sbjct:   93 VEQLQQLFTWLGHRAASVSIDDFYLTHTDQKDLAARHPGNRLLQLRGNAGTHDLGLGSETLKRL------------RELR----------SAGDTAAVPRYDKSAFGGLGDRADPSTWPVVSGP 194
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BLAST of mRNA_Ecto-sp13_S_contig74546.18639.1 vs. uniprot
Match: A0A8J4EYY6_9CHLO (PRK domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EYY6_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 1.100e-21
Identity = 59/124 (47.58%), Postives = 71/124 (57.26%), Query Frame = 1 
Query:    1 VSEMQRMLEKAGHQCVVMSIDDFYLTGAEQDALAARFPTNPLLQVRGNAGTHDLALALRTIRALTRGDDGTSDGDSRDLRPSLPSSAEDPAAQDCVRVPRYDKSARGGKGDRALEGEWSVVSTP 372
            V +++++    G     +SIDDFYLT A+Q ALAA  P N LLQ+RGNAGTHDLAL   T++ L RG   T+ G S                   V VPRYDKSA GG+GDRA    W VVS P
Sbjct:  146 VEQLEQLFNWLGRPAASVSIDDFYLTNADQTALAAANPDNRLLQLRGNAGTHDLALGTETVKRL-RG--LTTPGQS-------------------VAVPRYDKSAYGGRGDRAAASTWPVVSGP 247
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BLAST of mRNA_Ecto-sp13_S_contig74546.18639.1 vs. uniprot
Match: A0A8J4EXJ3_9CHLO (PRK domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4EXJ3_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 1.600e-21
Identity = 59/124 (47.58%), Postives = 71/124 (57.26%), Query Frame = 1 
Query:    1 VSEMQRMLEKAGHQCVVMSIDDFYLTGAEQDALAARFPTNPLLQVRGNAGTHDLALALRTIRALTRGDDGTSDGDSRDLRPSLPSSAEDPAAQDCVRVPRYDKSARGGKGDRALEGEWSVVSTP 372
            V +++++    G     +SIDDFYLT A+Q ALAA  P N LLQ+RGNAGTHDLAL   T++ L RG   T+ G S                   V VPRYDKSA GG+GDRA    W VVS P
Sbjct:  146 VEQLEQLFNWLGRPAASVSIDDFYLTNADQTALAAANPDNRLLQLRGNAGTHDLALGTETVKRL-RG--LTTPGQS-------------------VAVPRYDKSAYGGRGDRAAASTWPVVSGP 247
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BLAST of mRNA_Ecto-sp13_S_contig74546.18639.1 vs. uniprot
Match: A0A0G4I9K3_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I9K3_9ALVE)

HSP 1 Score: 98.2 bits (243), Expect = 1.700e-21
Identity = 57/124 (45.97%), Postives = 73/124 (58.87%), Query Frame = 1 
Query:    1 VSEMQRMLEKAGHQCVVMSIDDFYLTGAEQDALAARFPTNPLLQVRGNAGTHDLALALRTIRALTRGDDGTSDGDSRDLRPSLPSSAEDPAAQDCVRVPRYDKSARGGKGDRALEGEWSVVSTP 372
            V+ ++ ML  AG +  V+S+DDFYL G+ QD LA +FP+N LL+ RGNAG+HDL L   T+ +L +   G SD        S+P             VP YDKS RGG+GDRA E EW  VS P
Sbjct:  222 VTFLKDMLAAAGKKSAVVSVDDFYLRGSAQDELAEKFPSNGLLRFRGNAGSHDLQLGCETLESLRKA--GPSD--------SIP-------------VPFYDKSLRGGRGDRAPESEWGSVSGP 322
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BLAST of mRNA_Ecto-sp13_S_contig74546.18639.1 vs. uniprot
Match: A0A830HXH9_9CHLO (Uncharacterized protein n=3 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HXH9_9CHLO)

HSP 1 Score: 96.7 bits (239), Expect = 1.850e-21
Identity = 53/124 (42.74%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:    1 VSEMQRMLEKAGHQCVVMSIDDFYLTGAEQDALAARFPTNPLLQVRGNAGTHDLALALRTIRALTRGDDGTSDGDSRDLRPSLPSSAEDPAAQDCVRVPRYDKSARGGKGDRALEGEWSVVSTP 372
            V E+ R+    G  C  +S+DDFYL G +QD LAA+ P N LLQ RGN G+HD  L +RTI AL +   G                       D V++PRYDK+ RGG+GDRA E  W  V+ P
Sbjct:  103 VEELARLFRDDGVNCCNVSLDDFYLRGEQQDELAAKHPENSLLQFRGNFGSHDPDLGIRTIDALRQASKG-----------------------DVVKLPRYDKALRGGRGDRAPESTWPQVTGP 203
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74546.18639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG59_ECTSI1.800e-7395.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1H5_9PHAE6.840e-7396.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
C1N2V1_MICPC3.550e-2547.29Glycerate kinase n=1 Tax=Micromonas pusilla (strai... [more]
A0A835YJH1_9STRA3.180e-2350.43P-loop containing nucleoside triphosphate hydrolas... [more]
A0A0G4FG08_VITBC9.250e-2344.35Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
D8U4S9_VOLCA2.260e-2246.77PRK domain-containing protein n=1 Tax=Volvox carte... [more]
A0A8J4EYY6_9CHLO1.100e-2147.58PRK domain-containing protein n=1 Tax=Volvox afric... [more]
A0A8J4EXJ3_9CHLO1.600e-2147.58PRK domain-containing protein n=3 Tax=Volvox TaxID... [more]
A0A0G4I9K3_9ALVE1.700e-2145.97Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A830HXH9_9CHLO1.850e-2142.74Uncharacterized protein n=3 Tax=Pycnococcus provas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74546contigEcto-sp13_S_contig74546:1..657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score231.1
Seed ortholog evalue2.7e-58
Seed eggNOG ortholog2880.D8LG59
Preferred nameGLYK
Model size372
KEGG rclassRC00002,RC00017,RC00056,RC00069,RC00382,RC00488,RC00710,RC01245,RC02303
KEGG koko:K01533,ko:K01760,ko:K15918
KEGG TC3.A.3.5
KEGG ReactionR00086,R00782,R01286,R01514,R02408,R04941
KEGG Pathwayko00260,ko00270,ko00450,ko00561,ko00630,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map00450,map00561,map00630,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00017,M00532
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004849,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0017076,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034404,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042455,GO:0043094,GO:0043097,GO:0043167,GO:0043168,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Exons2
EggNOG free text desc.uridine kinase activity
EggNOG OGsCOG4240@1,KOG2878@2759
EC2.7.1.31,3.6.3.4,4.4.1.8
Cds size363
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464014.6970475-UTR-Ecto-sp13_S_contig74546:0..91681464014.6970475-UTR-Ecto-sp13_S_contig74546:0..9Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig74546 1..9 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464014.7162304-CDS-Ecto-sp13_S_contig74546:9..901681464014.7162304-CDS-Ecto-sp13_S_contig74546:9..90Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74546 10..90 +
1681464014.727394-CDS-Ecto-sp13_S_contig74546:375..6571681464014.727394-CDS-Ecto-sp13_S_contig74546:375..657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74546 376..657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74546.18639.1prot_Ecto-sp13_S_contig74546.18639.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74546 10..657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74546.18639.1

>prot_Ecto-sp13_S_contig74546.18639.1 ID=prot_Ecto-sp13_S_contig74546.18639.1|Name=mRNA_Ecto-sp13_S_contig74546.18639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
MQRMLEKAGHQCVVMSIDDFYLTGAEQDALAARFPTNPLLQVRGNAGTHD
LALALRTIRALTRGDDGTSDGDSRDLRPSLPSSAEDPAAQDCVRVPRYDK
SARGGKGDRALEGEWSVVSTP
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mRNA from alignment at Ecto-sp13_S_contig74546:1..657+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74546.18639.1 ID=mRNA_Ecto-sp13_S_contig74546.18639.1|Name=mRNA_Ecto-sp13_S_contig74546.18639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74546:1..657+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCCGAGATGCAGCGCATGCTTGAGAAGGCTGGCCACCAGTGCGTCGT
GATGTCGATCGACGACTTCTACCTCACGGGAGCCGAGCAGGTGTACTACT
GCTGCTGCTGCTGCTGCTGCTGCTGCTTCATCACTTTTCTGCACATCAAG
TTCAGTTGTTGCCTACCTTATTATGCATGTGTAGTGCTATCGCAACAACG
AGTCGTGATACCACAACAGACAGCAGTGTGTGTTCGGCTTGAGGACTCGT
CAGAAACAGAGGCTAATACCGAGGCAGGACGCAGAGCGTAACGCGTGCTC
TCCCCTTGCCAGCCCCCCCCCCCCCCCCCCCGACCAAATCTCTTGCTTGC
ACCTGACAACCTTTGGTGAACGCAGGACGCTCTAGCGGCGAGGTTCCCGA
CCAATCCCTTGCTTCAGGTCCGCGGCAACGCGGGAACGCACGACCTGGCC
CTAGCTCTCCGCACGATCCGCGCATTAACAAGGGGGGATGACGGCACAAG
CGACGGTGATAGCAGAGATCTCCGCCCATCGCTCCCCTCCTCAGCCGAAG
ACCCGGCAGCCCAAGACTGCGTTCGTGTTCCCCGATACGACAAGTCAGCG
AGAGGGGGAAAGGGCGATCGCGCGCTCGAGGGGGAGTGGAGCGTGGTTTC
GACGCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74546:1..657+

>mRNA_Ecto-sp13_S_contig74546.18639.1 ID=mRNA_Ecto-sp13_S_contig74546.18639.1|Name=mRNA_Ecto-sp13_S_contig74546.18639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74546:1..657+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCGCATGCTTGAGAAGGCTGGCCACCAGTGCGTCGTGATGTCGAT
CGACGACTTCTACCTCACGGGAGCCGAGCAGGACGCTCTAGCGGCGAGGT
TCCCGACCAATCCCTTGCTTCAGGTCCGCGGCAACGCGGGAACGCACGAC
CTGGCCCTAGCTCTCCGCACGATCCGCGCATTAACAAGGGGGGATGACGG
CACAAGCGACGGTGATAGCAGAGATCTCCGCCCATCGCTCCCCTCCTCAG
CCGAAGACCCGGCAGCCCAAGACTGCGTTCGTGTTCCCCGATACGACAAG
TCAGCGAGAGGGGGAAAGGGCGATCGCGCGCTCGAGGGGGAGTGGAGCGT
GGTTTCGACGCCA
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