prot_Ecto-sp13_S_contig74513.18637.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig74513.18637.1
Unique Nameprot_Ecto-sp13_S_contig74513.18637.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length54
Homology
BLAST of mRNA_Ecto-sp13_S_contig74513.18637.1 vs. uniprot
Match: A0A6H5JHG7_9PHAE (ANAPC8 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHG7_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.780e-22
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0
Query:    1 QFFLQHLLVEQHRSKDALAILDDLEPSFPCSSYVLSQTAVAHYHLR 46
            QFFLQHLLVEQHRSKDALAILDDLEPSFPCSSYVLSQTAVAHYHLR
Sbjct:  329 QFFLQHLLVEQHRSKDALAILDDLEPSFPCSSYVLSQTAVAHYHLR 374          
BLAST of mRNA_Ecto-sp13_S_contig74513.18637.1 vs. uniprot
Match: A0A0P1AQJ1_PLAHL (Anaphase-promoting complex n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQJ1_PLAHL)

HSP 1 Score: 48.1 bits (113), Expect = 5.850e-5
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 0
Query:    1 QFFLQHLLVEQHRSKDALAILDDLEPSFPCSSYVLSQTAVAHYHLR 46
            Q F  H+L++Q ++  A A+L +LE  FP S+Y+LSQ A+A YH+R
Sbjct:  301 QLFQAHVLLDQQQNDAARALLTNLEEQFPKSTYLLSQQALASYHIR 346          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74513.18637.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHG7_9PHAE4.780e-22100.00ANAPC8 domain-containing protein n=3 Tax=Ectocarpu... [more]
A0A0P1AQJ1_PLAHL5.850e-547.83Anaphase-promoting complex n=1 Tax=Plasmopara hals... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..52
e-value: 1.9E-7
score: 32.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74513contigEcto-sp13_S_contig74513:92..253 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74513.18637.1mRNA_Ecto-sp13_S_contig74513.18637.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig74513 92..253 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig74513.18637.1 ID=prot_Ecto-sp13_S_contig74513.18637.1|Name=mRNA_Ecto-sp13_S_contig74513.18637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
QFFLQHLLVEQHRSKDALAILDDLEPSFPCSSYVLSQTAVAHYHLRSETN
NEQR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf