mRNA_Ecto-sp13_S_contig74513.18637.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74513.18637.1
Unique NamemRNA_Ecto-sp13_S_contig74513.18637.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig74513.18637.1 vs. uniprot
Match: A0A6H5JHG7_9PHAE (ANAPC8 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHG7_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.780e-22
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 QFFLQHLLVEQHRSKDALAILDDLEPSFPCSSYVLSQTAVAHYHLR 138
            QFFLQHLLVEQHRSKDALAILDDLEPSFPCSSYVLSQTAVAHYHLR
Sbjct:  329 QFFLQHLLVEQHRSKDALAILDDLEPSFPCSSYVLSQTAVAHYHLR 374
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BLAST of mRNA_Ecto-sp13_S_contig74513.18637.1 vs. uniprot
Match: A0A0P1AQJ1_PLAHL (Anaphase-promoting complex n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQJ1_PLAHL)

HSP 1 Score: 48.1 bits (113), Expect = 5.850e-5
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 QFFLQHLLVEQHRSKDALAILDDLEPSFPCSSYVLSQTAVAHYHLR 138
            Q F  H+L++Q ++  A A+L +LE  FP S+Y+LSQ A+A YH+R
Sbjct:  301 QLFQAHVLLDQQQNDAARALLTNLEEQFPKSTYLLSQQALASYHIR 346
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74513.18637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHG7_9PHAE4.780e-22100.00ANAPC8 domain-containing protein n=3 Tax=Ectocarpu... [more]
A0A0P1AQJ1_PLAHL5.850e-547.83Anaphase-promoting complex n=1 Tax=Plasmopara hals... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74513contigEcto-sp13_S_contig74513:92..253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score92.4
Seed ortholog evalue6.8e-17
Seed eggNOG ortholog2880.D7FLS8
Preferred nameAPC8
Model size162
KEGG koko:K03355
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0008150,GO:0031347,GO:0048583,GO:0050789,GO:0065007,GO:0080134
Exons1
EggNOG free text desc.regulation of mitotic metaphase/anaphase transition
EggNOG OGsCOG0013@1,KOG1155@2759
Ec32 ortholog descriptionCdc23
Ec32 orthologEc-00_007980.4
Cds size162
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464014.6171172-CDS-Ecto-sp13_S_contig74513:91..2531681464014.6171172-CDS-Ecto-sp13_S_contig74513:91..253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74513 92..253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74513.18637.1prot_Ecto-sp13_S_contig74513.18637.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74513 92..253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74513.18637.1

>prot_Ecto-sp13_S_contig74513.18637.1 ID=prot_Ecto-sp13_S_contig74513.18637.1|Name=mRNA_Ecto-sp13_S_contig74513.18637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
QFFLQHLLVEQHRSKDALAILDDLEPSFPCSSYVLSQTAVAHYHLRSETN
NEQR
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mRNA from alignment at Ecto-sp13_S_contig74513:92..253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74513.18637.1 ID=mRNA_Ecto-sp13_S_contig74513.18637.1|Name=mRNA_Ecto-sp13_S_contig74513.18637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74513:92..253+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTCTTTCTGCAACACCTTCTGGTTGAGCAGCACCGTTCCAAGGATGC
GCTCGCCATCCTCGACGACTTGGAGCCGTCTTTCCCTTGCAGCTCCTACG
TCCTGTCGCAGACGGCGGTCGCCCACTACCACCTGAGAAGTGAGACGAAC
AACGAGCAACGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74513:92..253+

>mRNA_Ecto-sp13_S_contig74513.18637.1 ID=mRNA_Ecto-sp13_S_contig74513.18637.1|Name=mRNA_Ecto-sp13_S_contig74513.18637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74513:92..253+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTCTTTCTGCAACACCTTCTGGTTGAGCAGCACCGTTCCAAGGATGC
GCTCGCCATCCTCGACGACTTGGAGCCGTCTTTCCCTTGCAGCTCCTACG
TCCTGTCGCAGACGGCGGTCGCCCACTACCACCTGAGAAGTGAGACGAAC
AACGAGCAACGG
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